mRNA_P-canaliculata_contig98818.24000.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98818.24000.1
Unique NamemRNA_P-canaliculata_contig98818.24000.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A518ESV6_9BACT (Polysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ESV6_9BACT)

HSP 1 Score: 296 bits (759), Expect = 1.210e-94
Identity = 157/296 (53.04%), Postives = 208/296 (70.27%), Query Frame = 1 
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
            PL + PR    +ALQ ERRM+AL+RV++GQEL RL  V+ GAL   NA+GP +G+LA +  G+  A+D + RER+   S LP +  A+R++ V A  A++EG+K+GLVRN++SLG+  +P+L+LG  G+  WV YLR A R+  M R+ M GINRTALP  SQLA VKD+  LRR YW+ S +SG   TLGL V LPLLP+VI  L+  ++ +PV+ L LIL+PG+A+ SFSVANDVFYLVT QMR A+ IS+ GL V T V  +  H  P VG A+GL+  CL+SLVH+ YA  W
Sbjct:  140 PLLDVPRIAACSALQAERRMLALARVDIGQELCRLVLVLAGALAFGNAMGPVVGMLAASAAGSAIALDTFRRERKEPSSSLPRMGTAIRARSVPARLALREGIKVGLVRNIDSLGMTILPTLILGGVGDQKWVTYLRIAQRMITMARLFMQGINRTALPALSQLAGVKDLVGLRRLYWRASFYSGGAVTLGLLVFLPLLPYVIG-LFEESYAEPVWLLSLILAPGLAIVSFSVANDVFYLVTGQMRVAIVISMVGLFVNTTVITVLAHQFPRVGVAMGLTFTCLFSLVHVGYAWLW 434
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BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A800N2Y8_9BACT (Lipopolysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800N2Y8_9BACT)

HSP 1 Score: 247 bits (630), Expect = 1.620e-75
Identity = 136/297 (45.79%), Postives = 193/297 (64.98%), Query Frame = 1 
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSK-GVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
            PL E PR + +A L+G RRM+A++RVE  QE+ R+  VV+GAL+T +A+GP +G ++ +  G+L A+  + RER      LP + E LR+   V     ++ G+K+G+VRN+++L ++ +P+L+LG F +  WVA+LR A R+  + R+ M GI+RTALPV S LA+V+D  ALRR YW+ +  SG +   GL ++  +LP+ IR   P  F  PV+   LIL PG AV  FSVAND FYLVT Q+R A+ +SL GL V T+V  +     P+ GAAVGLS   LWSL H+ YA  W
Sbjct:  140 PLLELPRVVALAGLEGARRMLAVTRVENAQEVLRVVLVVIGALLTGSAVGPAIGTVSASALGSLVALRVFKRERLVHAPDLPGMGEVLRAAVRVPWTMGLRLGIKMGIVRNIDALAVQVLPALILGHFSSPQWVAFLRIAQRLVDVSRMFMKGISRTALPVLSGLANVRDRAALRRVYWRATLGSGLLIASGLGISTLVLPWAIRAFLPYAFHHPVWISFLILLPGTAVVGFSVANDTFYLVTGQLRVAILLSLVGLAVNTSVLVLACMRWPDYGAAVGLSFTFLWSLTHVGYAAFW 436
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BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A2E6D5A8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6D5A8_9BACT)

HSP 1 Score: 243 bits (621), Expect = 4.810e-74
Identity = 130/297 (43.77%), Postives = 195/297 (65.66%), Query Frame = 1 
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEAL-RSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
            PL E PR+ C AA QG RRMVAL++VE GQE  R+  VV GA+IT +A+GP +G+L  +  G++ AVD Y RE RS ++ LP +   L R K       ++ G+++G+ +N+++LG+  +P+++LG  GN  WVAY+R A RI   +R LM GINRTALP FS+L  +KD++ LRR YW+ +  SGA+ + G+ +   L+P ++   +P+++ DPV+T+ LIL+PG+ V SFSVAND FYLVT  ++ A+        V   + A+  HF P+VG ++ L++    S++H AYA  W
Sbjct:  140 PLLELPRSACCAAFQGTRRMVALAKVENGQECVRVFLVVAGAVITRDAVGPAVGMLLASCVGSVLAVDAYVRETRSGEAPLPSVRMVLGRFKEAPLFYGLRLGLRLGVTQNMHALGVNILPTMVLGFVGNTRWVAYMRLAQRIVDAVRTLMQGINRTALPYFSELVGLKDLRGLRRAYWRATLGSGALVSTGVVLIGFLVPSLVEA-FPSDYRDPVWTVFLILAPGVMVVSFSVANDTFYLVTDNLKVAIVFGAVQFAVHLTLLALLGHFYPKVGPSIALTVFFFSSVIHPAYAYFW 435
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BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Match: A0A800G0X3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G0X3_9BACT)

HSP 1 Score: 235 bits (599), Expect = 1.080e-70
Identity = 123/297 (41.41%), Postives = 190/297 (63.97%), Query Frame = 1 
Query:    1 PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALGPTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEAL-RSKGVGAMSAVKEGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLMFGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLPFVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVFISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRW 888
            PL E PR+ C AA QG RRMVAL++VE G E  R+  VV GA++T +A+GP +G+L  +  G++ AVD Y RE R+ +  LP +   L R K       ++ G+++G+ +N+++LG+  +P+++LGV G+  WVAY+R A RI   +R LM GINRTALP FS+L  ++D+  LRR YW+ +  SGA+ + G+     L+P +++  +P+++ DPV+T+ LIL+PG+ V SFSVAND FYLVT  ++TA+        V   +  +  +  P VG ++ L++    S++H  YA  W
Sbjct:  148 PLIELPRSACCAAFQGTRRMVALAKVENGHECVRVFLVVAGAVVTQDAVGPAVGMLVASCVGSIIAVDAYVRETRTGEKPLPKVRTVLGRFKEAPLFFGLRLGIRLGVTQNMHALGVNILPTMVLGVVGDTRWVAYMRLAQRIVDAIRTLMQGINRTALPYFSELVGLRDLSGLRRAYWRATLGSGALVSTGVVALGFLVPSIVQA-FPSDYRDPVWTVFLILAPGVMVVSFSVANDTFYLVTDNLKTAILFGAMQFAVHLTLLMLFGYLWPTVGPSIALTVFFFSSVIHPTYAYFW 443
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98818.24000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518ESV6_9BACT1.210e-9453.04Polysaccharide biosynthesis protein n=1 Tax=Planct... [more]
A0A800N2Y8_9BACT1.620e-7545.79Lipopolysaccharide biosynthesis protein n=1 Tax=Pl... [more]
A0A2E6D5A8_9BACT4.810e-7443.77Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A800G0X3_9BACT1.080e-7041.41Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98818contigP-canaliculata_contig98818:138..1055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size918
Cds size918
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.9028502-CDS-P-canaliculata_contig98818:137..10551622817349.9028502-CDS-P-canaliculata_contig98818:137..1055Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98818 138..1055 -
1693495239.7389936-CDS-P-canaliculata_contig98818:137..10551693495239.7389936-CDS-P-canaliculata_contig98818:137..1055Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98818 138..1055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98818.24000.1prot_P-canaliculata_contig98818.24000.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98818 138..1055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98818.24000.1

>prot_P-canaliculata_contig98818.24000.1 ID=prot_P-canaliculata_contig98818.24000.1|Name=mRNA_P-canaliculata_contig98818.24000.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=306bp
PLFEAPRNICIAALQGERRMVALSRVELGQELARLGFVVMGALITDNALG
PTLGLLAGTLCGALFAVDGYSRERRSEDSILPPLIEALRSKGVGAMSAVK
EGVKIGLVRNVNSLGIETIPSLLLGVFGNFDWVAYLRNALRISGMLRVLM
FGINRTALPVFSQLAHVKDVQALRRTYWKVSAFSGAVTTLGLAVALPLLP
FVIRVLYPANFWDPVYTLVLILSPGIAVASFSVANDVFYLVTQQMRTAVF
ISLGGLVVTTAVCAICVHFMPEVGAAVGLSIACLWSLVHMAYAGRWLSHH
GSPTR*
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mRNA from alignment at P-canaliculata_contig98818:138..1055-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98818.24000.1 ID=mRNA_P-canaliculata_contig98818.24000.1|Name=mRNA_P-canaliculata_contig98818.24000.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=918bp|location=Sequence derived from alignment at P-canaliculata_contig98818:138..1055- (Pelvetia canaliculata dioecious)
CCCCTGTTCGAGGCCCCGCGGAATATTTGTATCGCCGCACTACAAGGCGA
GCGCCGCATGGTCGCGCTCTCGCGGGTGGAGCTGGGTCAGGAGCTAGCTC
GCCTCGGCTTTGTGGTGATGGGGGCGCTCATCACAGACAACGCCCTCGGG
CCCACCCTAGGCCTGCTCGCCGGGACACTCTGCGGCGCACTGTTCGCGGT
GGACGGCTACTCCCGCGAGCGTCGCTCCGAGGACTCGATCCTCCCGCCGC
TGATCGAGGCCCTGCGCTCGAAGGGGGTCGGCGCGATGAGCGCCGTCAAG
GAGGGCGTCAAGATTGGGCTTGTGCGAAACGTCAACTCCCTTGGCATCGA
GACGATTCCCTCGCTTCTTCTAGGCGTGTTCGGCAACTTTGACTGGGTAG
CGTACCTGCGCAATGCCCTGCGCATCAGTGGCATGCTGCGCGTCCTGATG
TTTGGCATCAACCGCACTGCACTGCCGGTCTTTTCGCAACTCGCACACGT
CAAGGACGTTCAGGCCCTGCGGCGAACCTATTGGAAGGTCAGCGCCTTCT
CCGGGGCGGTCACGACCCTCGGGCTCGCCGTGGCGCTCCCGCTGCTGCCC
TTCGTGATCCGGGTCCTCTACCCAGCGAACTTCTGGGACCCCGTGTACAC
CCTTGTGCTGATCCTGAGCCCGGGTATTGCCGTGGCGTCCTTCTCCGTCG
CTAACGATGTCTTCTACCTCGTCACTCAGCAGATGCGCACGGCGGTGTTC
ATCTCCCTCGGGGGCCTGGTCGTGACCACGGCGGTCTGTGCGATCTGCGT
GCACTTCATGCCTGAGGTGGGGGCGGCGGTCGGCCTGAGCATCGCCTGTC
TTTGGAGCCTAGTGCACATGGCCTACGCCGGGCGCTGGCTCAGCCATCAC
GGCTCCCCGACCCGCTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig98818:138..1055-

>mRNA_P-canaliculata_contig98818.24000.1 ID=mRNA_P-canaliculata_contig98818.24000.1|Name=mRNA_P-canaliculata_contig98818.24000.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at P-canaliculata_contig98818:138..1055- (Pelvetia canaliculata dioecious)
CCCCTGTTCGAGGCCCCGCGGAATATTTGTATCGCCGCACTACAAGGCGA
GCGCCGCATGGTCGCGCTCTCGCGGGTGGAGCTGGGTCAGGAGCTAGCTC
GCCTCGGCTTTGTGGTGATGGGGGCGCTCATCACAGACAACGCCCTCGGG
CCCACCCTAGGCCTGCTCGCCGGGACACTCTGCGGCGCACTGTTCGCGGT
GGACGGCTACTCCCGCGAGCGTCGCTCCGAGGACTCGATCCTCCCGCCGC
TGATCGAGGCCCTGCGCTCGAAGGGGGTCGGCGCGATGAGCGCCGTCAAG
GAGGGCGTCAAGATTGGGCTTGTGCGAAACGTCAACTCCCTTGGCATCGA
GACGATTCCCTCGCTTCTTCTAGGCGTGTTCGGCAACTTTGACTGGGTAG
CGTACCTGCGCAATGCCCTGCGCATCAGTGGCATGCTGCGCGTCCTGATG
TTTGGCATCAACCGCACTGCACTGCCGGTCTTTTCGCAACTCGCACACGT
CAAGGACGTTCAGGCCCTGCGGCGAACCTATTGGAAGGTCAGCGCCTTCT
CCGGGGCGGTCACGACCCTCGGGCTCGCCGTGGCGCTCCCGCTGCTGCCC
TTCGTGATCCGGGTCCTCTACCCAGCGAACTTCTGGGACCCCGTGTACAC
CCTTGTGCTGATCCTGAGCCCGGGTATTGCCGTGGCGTCCTTCTCCGTCG
CTAACGATGTCTTCTACCTCGTCACTCAGCAGATGCGCACGGCGGTGTTC
ATCTCCCTCGGGGGCCTGGTCGTGACCACGGCGGTCTGTGCGATCTGCGT
GCACTTCATGCCTGAGGTGGGGGCGGCGGTCGGCCTGAGCATCGCCTGTC
TTTGGAGCCTAGTGCACATGGCCTACGCCGGGCGCTGGCTCAGCCATCAC
GGCTCCCCGACCCGCTAGCCCCTGTTCGAGGCCCCGCGGAATATTTGTAT
CGCCGCACTACAAGGCGAGCGCCGCATGGTCGCGCTCTCGCGGGTGGAGC
TGGGTCAGGAGCTAGCTCGCCTCGGCTTTGTGGTGATGGGGGCGCTCATC
ACAGACAACGCCCTCGGGCCCACCCTAGGCCTGCTCGCCGGGACACTCTG
CGGCGCACTGTTCGCGGTGGACGGCTACTCCCGCGAGCGTCGCTCCGAGG
ACTCGATCCTCCCGCCGCTGATCGAGGCCCTGCGCTCGAAGGGGGTCGGC
GCGATGAGCGCCGTCAAGGAGGGCGTCAAGATTGGGCTTGTGCGAAACGT
CAACTCCCTTGGCATCGAGACGATTCCCTCGCTTCTTCTAGGCGTGTTCG
GCAACTTTGACTGGGTAGCGTACCTGCGCAATGCCCTGCGCATCAGTGGC
ATGCTGCGCGTCCTGATGTTTGGCATCAACCGCACTGCACTGCCGGTCTT
TTCGCAACTCGCACACGTCAAGGACGTTCAGGCCCTGCGGCGAACCTATT
GGAAGGTCAGCGCCTTCTCCGGGGCGGTCACGACCCTCGGGCTCGCCGTG
GCGCTCCCGCTGCTGCCCTTCGTGATCCGGGTCCTCTACCCAGCGAACTT
CTGGGACCCCGTGTACACCCTTGTGCTGATCCTGAGCCCGGGTATTGCCG
TGGCGTCCTTCTCCGTCGCTAACGATGTCTTCTACCTCGTCACTCAGCAG
ATGCGCACGGCGGTGTTCATCTCCCTCGGGGGCCTGGTCGTGACCACGGC
GGTCTGTGCGATCTGCGTGCACTTCATGCCTGAGGTGGGGGCGGCGGTCG
GCCTGAGCATCGCCTGTCTTTGGAGCCTAGTGCACATGGCCTACGCCGGG
CGCTGGCTCAGCCATCACGGCTCCCCGACCCGCTAG
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