mRNA_P-canaliculata_contig98812.23999.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98812.23999.1
Unique NamemRNA_P-canaliculata_contig98812.23999.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98812.23999.1 vs. uniprot
Match: A0A5C6BX72_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BX72_9BACT)

HSP 1 Score: 186 bits (471), Expect = 3.080e-52
Identity = 106/264 (40.15%), Postives = 153/264 (57.95%), Query Frame = 1 
Query:    1 ALQYVDGWIETAADDPLPFLRKGELLMSAQRLSEAESYLTMSIQMDSNPHEAEKSLALLYEKTGNKIEALKILERETKANPTNVDLQLLMCNVLFGLNRDADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPHDVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQSRPDYLGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGDPGKAADFNKAAESL 792
            AL +V+ WIE A+++P     K ELL +A  +  AE     +I+ D     A   LA L +  G   EA++  + E    P N+ L+LL C+ L  + R  +A   LR+VL    L+F A H+LAS LA+RG+ A+VIE++ PL++ F  D SL+YL+A A  E GDA  +D+ MQ HLD R+ L+ L +  K  + G   +   L IA +Y +YQWD AEP + RAI NSP + DA+  MA F   KGD  +A+ + +AA  +
Sbjct:  197 ALHHVNEWIEAASENPRAIAYKAELLATAGDMDAAEKLFRTAIRQDPALRRARHGLAKLMKYVGKYQEAVEQFDIEIANEPDNITLRLLRCDALLQMQRSDEAIEGLRDVLELDELNFPARHSLASQLAKRGEHAQVIEVLTPLMNRFADDASLNYLLASAYSEQGDAERADQHMQKHLDGRKRLDELAMITKSLSDGEPDQDALLMIARDYMKYQWDVAEPWIVRAIQNSPDTPDAFLVMADFQRKKGDLEQASQYVQAARQV 460
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98812.23999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C6BX72_9BACT3.080e-5240.15Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98812contigP-canaliculata_contig98812:5..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size804
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.8704863-CDS-P-canaliculata_contig98812:4..8081622817349.8704863-CDS-P-canaliculata_contig98812:4..808Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98812 5..808 +
1693495239.724625-CDS-P-canaliculata_contig98812:4..8081693495239.724625-CDS-P-canaliculata_contig98812:4..808Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98812 5..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98812.23999.1prot_P-canaliculata_contig98812.23999.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98812 5..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98812.23999.1

>prot_P-canaliculata_contig98812.23999.1 ID=prot_P-canaliculata_contig98812.23999.1|Name=mRNA_P-canaliculata_contig98812.23999.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=268bp
ALQYVDGWIETAADDPLPFLRKGELLMSAQRLSEAESYLTMSIQMDSNPH
EAEKSLALLYEKTGNKIEALKILERETKANPTNVDLQLLMCNVLFGLNRD
ADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPH
DVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQ
SRPDYLGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGD
PGKAADFNKAAESLRNN*
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mRNA from alignment at P-canaliculata_contig98812:5..808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98812.23999.1 ID=mRNA_P-canaliculata_contig98812.23999.1|Name=mRNA_P-canaliculata_contig98812.23999.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at P-canaliculata_contig98812:5..808+ (Pelvetia canaliculata dioecious)
GCTCTCCAATACGTCGATGGCTGGATCGAAACGGCAGCGGATGACCCACT
GCCGTTTCTAAGGAAGGGGGAATTATTGATGTCAGCTCAGCGGCTAAGCG
AAGCGGAATCATATCTGACGATGTCAATACAAATGGATTCAAATCCGCAC
GAAGCAGAAAAATCTCTGGCGTTGCTGTACGAAAAGACTGGTAACAAAAT
CGAAGCACTGAAAATCCTGGAACGCGAAACCAAGGCGAATCCTACTAACG
TTGATCTGCAGCTGCTGATGTGCAATGTCCTGTTCGGATTGAACCGCGAC
GCTGATGCCGCTGCGGTACTTCGTGAAGTACTTCGCACACACCCGCTTCA
TTTTACGGCGACGCATGCGTTGGCATCTTCGTTGGCAGAGCGAGGGCAGC
CCGCCGAGGTCATCGAGCTTGTTAAGCCGCTGCTGCATGAATTTCCCCAC
GACGTTTCATTAAGCTATCTGATGGCATGGGCAAACTTGGAACTCGGAGA
CGCCACCGAGTCTGACCGTTGGATGCAAATCCATCTCGATGCCCGCAGGG
CGTTGAATCGACTATTCGTGGAGCTAAAGAAGTCCACGACAGGTTCTCAA
AGCCGTCCAGACTATCTAGGAATTGCCAACGAGTACTTTCAGTATCAGTG
GGACAAAGCTGAACCCGCTCTAGCGAGAGCAATTAGTAACAGCCCCCGTT
CCGCAGATGCCTATCGAGCGATGGCGAAATTTTCCGAAATGAAAGGAGAT
CCAGGCAAGGCTGCTGACTTTAACAAAGCCGCCGAAAGCTTGCGAAATAA
CTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98812:5..808+

>mRNA_P-canaliculata_contig98812.23999.1 ID=mRNA_P-canaliculata_contig98812.23999.1|Name=mRNA_P-canaliculata_contig98812.23999.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at P-canaliculata_contig98812:5..808+ (Pelvetia canaliculata dioecious)
GCTCTCCAATACGTCGATGGCTGGATCGAAACGGCAGCGGATGACCCACT
GCCGTTTCTAAGGAAGGGGGAATTATTGATGTCAGCTCAGCGGCTAAGCG
AAGCGGAATCATATCTGACGATGTCAATACAAATGGATTCAAATCCGCAC
GAAGCAGAAAAATCTCTGGCGTTGCTGTACGAAAAGACTGGTAACAAAAT
CGAAGCACTGAAAATCCTGGAACGCGAAACCAAGGCGAATCCTACTAACG
TTGATCTGCAGCTGCTGATGTGCAATGTCCTGTTCGGATTGAACCGCGAC
GCTGATGCCGCTGCGGTACTTCGTGAAGTACTTCGCACACACCCGCTTCA
TTTTACGGCGACGCATGCGTTGGCATCTTCGTTGGCAGAGCGAGGGCAGC
CCGCCGAGGTCATCGAGCTTGTTAAGCCGCTGCTGCATGAATTTCCCCAC
GACGTTTCATTAAGCTATCTGATGGCATGGGCAAACTTGGAACTCGGAGA
CGCCACCGAGTCTGACCGTTGGATGCAAATCCATCTCGATGCCCGCAGGG
CGTTGAATCGACTATTCGTGGAGCTAAAGAAGTCCACGACAGGTTCTCAA
AGCCGTCCAGACTATCTAGGAATTGCCAACGAGTACTTTCAGTATCAGTG
GGACAAAGCTGAACCCGCTCTAGCGAGAGCAATTAGTAACAGCCCCCGTT
CCGCAGATGCCTATCGAGCGATGGCGAAATTTTCCGAAATGAAAGGAGAT
CCAGGCAAGGCTGCTGACTTTAACAAAGCCGCCGAAAGCTTGCGAAATAA
CTGAGCTCTCCAATACGTCGATGGCTGGATCGAAACGGCAGCGGATGACC
CACTGCCGTTTCTAAGGAAGGGGGAATTATTGATGTCAGCTCAGCGGCTA
AGCGAAGCGGAATCATATCTGACGATGTCAATACAAATGGATTCAAATCC
GCACGAAGCAGAAAAATCTCTGGCGTTGCTGTACGAAAAGACTGGTAACA
AAATCGAAGCACTGAAAATCCTGGAACGCGAAACCAAGGCGAATCCTACT
AACGTTGATCTGCAGCTGCTGATGTGCAATGTCCTGTTCGGATTGAACCG
CGACGCTGATGCCGCTGCGGTACTTCGTGAAGTACTTCGCACACACCCGC
TTCATTTTACGGCGACGCATGCGTTGGCATCTTCGTTGGCAGAGCGAGGG
CAGCCCGCCGAGGTCATCGAGCTTGTTAAGCCGCTGCTGCATGAATTTCC
CCACGACGTTTCATTAAGCTATCTGATGGCATGGGCAAACTTGGAACTCG
GAGACGCCACCGAGTCTGACCGTTGGATGCAAATCCATCTCGATGCCCGC
AGGGCGTTGAATCGACTATTCGTGGAGCTAAAGAAGTCCACGACAGGTTC
TCAAAGCCGTCCAGACTATCTAGGAATTGCCAACGAGTACTTTCAGTATC
AGTGGGACAAAGCTGAACCCGCTCTAGCGAGAGCAATTAGTAACAGCCCC
CGTTCCGCAGATGCCTATCGAGCGATGGCGAAATTTTCCGAAATGAAAGG
AGATCCAGGCAAGGCTGCTGACTTTAACAAAGCCGCCGAAAGCTTGCGAA
ATAACTGA
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