prot_P-canaliculata_contig98762.23985.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig98762.23985.1
Unique Name	prot_P-canaliculata_contig98762.23985.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	192

Homology

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A7Y9U7S9_9BURK (Two-component system response regulator BaeR n=1 Tax=Sphaerotilus montanus TaxID=522889 RepID=A0A7Y9U7S9_9BURK)

HSP 1 Score: 249 bits (636), Expect = 5.010e-81
Identity = 125/194 (64.43%), Postives = 154/194 (79.38%), Query Frame = 0

Query:    1 MKSSRKILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQL--KTSLWKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            M S R++LVVEDD +IA +LLDYLR EGF+A +++DG  A+  V   PP ++ILDLNLPGLDG+ +C+AVR+FSD+PILM+TARIDE DRLLGL+SGADDYVCKPFSP EVMARV+A +RR +G++    SLW +DDA   I W+ Q L LT +EFRML  LL QPGRVFSR+QLL+  H D R VSDRAID+H
Sbjct:    1 MTSERRVLVVEDDPRIALLLLDYLRSEGFDARTLADGHLALAEVRHAPPSLLILDLNLPGLDGVSLCRAVRQFSDVPILMVTARIDELDRLLGLNSGADDYVCKPFSPREVMARVQALLRRAEGRVTRSASLWTLDDAGLRIAWRGQWLSLTPLEFRMLRQLLSQPGRVFSRSQLLESAHGDLRDVSDRAIDTH 194

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: UPI001917AC3F (response regulator n=1 Tax=Rubrivivax sp. A210 TaxID=2772301 RepID=UPI001917AC3F)

HSP 1 Score: 238 bits (606), Expect = 1.440e-76
Identity = 119/194 (61.34%), Postives = 151/194 (77.84%), Query Frame = 0

Query:    1 MKSSRKILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQLKTSL--WKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            M ++R+ILVVEDD +I+Q+LLDYLR +G +A +++DG  A+  +   PP ++ILDL LPGLDG+ +C+AVR+FS +PILMLTAR+DE DRLLGL+SGADDYVCKPFSP EVMARV+A +RR +G++  +   W IDDA   + W+ Q L LT +EFRML  LL QPGRVFSR QLLD  H D R VSDRAID+H
Sbjct:    1 MNAARRILVVEDDTRISQLLLDYLRNDGHQAQALADGELALSEIRHAPPDLLILDLMLPGLDGVSLCRAVRQFSAVPILMLTARVDELDRLLGLNSGADDYVCKPFSPREVMARVQALLRRAEGRVAAAPRPWTIDDAGLRMAWRGQWLQLTPLEFRMLRQLLSQPGRVFSRAQLLDSAHGDLRDVSDRAIDTH 194

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A523QB79_9BURK (Two-component system response regulator BaeR n=2 Tax=cellular organisms TaxID=131567 RepID=A0A523QB79_9BURK)

HSP 1 Score: 230 bits (586), Expect = 1.670e-73
Identity = 114/189 (60.32%), Postives = 147/189 (77.78%), Query Frame = 0

Query:    6 KILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQL--KTSLWKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            ++LVVEDD +IA +L+DYLR EG +A S++DG+ A++ +    P ++ILDL LPGLDG+ +C+ VR+FSD+PILMLTAR+DE DRLLGL+SGADDYVCKPFSP EVMARV+A +RR  G+L  +   W++D+A   I W+ Q L LT +EFRML  +L  PGRV+SR QLLD  H DQR VSDRAID+H
Sbjct:    8 RVLVVEDDPRIAMLLVDYLRHEGLQAHSLADGQLALNEIRHAVPDLLILDLGLPGLDGVSLCREVRQFSDVPILMLTARVDELDRLLGLNSGADDYVCKPFSPREVMARVQALLRRAQGRLAARPLPWEVDEAGLRIAWRGQWLALTPLEFRMLRQMLNHPGRVYSRQQLLDSAHPDQREVSDRAIDTH 196

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A257EAJ2_9BURK (Two-component system response regulator BaeR n=1 Tax=Comamonadaceae bacterium PBBC1 TaxID=2015580 RepID=A0A257EAJ2_9BURK)

HSP 1 Score: 228 bits (582), Expect = 5.940e-73
Identity = 114/189 (60.32%), Postives = 148/189 (78.31%), Query Frame = 0

Query:    6 KILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQLKT--SLWKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            ++LVVEDD++IAQ+L+DYL  EG +A +++DG  A+  + ++ P ++ILD+ LPGLDG+G+C+AVR+FSD+PILM+TAR+DE DRLLGL +GADDYVCKPFSP EVMARV+A +RR  G+L T  + W ID+ A  I W+ Q L LT +EFRML  LL +PGRVFSR QLLD  H D R VSDR ID+H
Sbjct:    5 RVLVVEDDLRIAQLLVDYLHNEGHQARALADGALALQDIRQSRPDLLILDVMLPGLDGVGLCRAVRQFSDVPILMVTARVDEIDRLLGLQTGADDYVCKPFSPREVMARVQALLRRSQGRLLTQQAAWHIDEEALRIAWRGQSLTLTPLEFRMLRLLLSRPGRVFSREQLLDAAHADLREVSDRTIDTH 193

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A2M6VPW4_9BURK (Two-component system response regulator BaeR n=2 Tax=unclassified Limnohabitans TaxID=2626134 RepID=A0A2M6VPW4_9BURK)

HSP 1 Score: 227 bits (579), Expect = 1.870e-72
Identity = 112/194 (57.73%), Postives = 147/194 (75.77%), Query Frame = 0

Query:    1 MKSSRKILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQLKTSL--WKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            M   R ILVVEDD +IAQ+LLDYL  EG+ A S SDG QA+H V+R  P +++LD+ LPG+DG+ +C+A+R+FSD+PI+M+TAR+DE DRLLGL++GADDYVCKPFSP EVMARV A +RR     K  +  W+I D A  I W+ Q L+LT +E+R+L   + QPGRVFSR QLL+ +H + R +SDRAID+H
Sbjct:    1 MSQPRHILVVEDDARIAQLLLDYLAHEGWRASSESDGNQALHAVQRQMPDLVLLDVMLPGMDGVSLCRAIRQFSDVPIMMITARVDEVDRLLGLNTGADDYVCKPFSPREVMARVHALLRRSQSHGKAHIKPWEIQDEAMRIAWRGQSLNLTPLEYRLLRLFISQPGRVFSRAQLLEALHLELRDISDRAIDTH 194

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A4V1CIE7_9BURK (Response regulator n=2 Tax=Hydrogenophaga sp. PAMC20947 TaxID=2565558 RepID=A0A4V1CIE7_9BURK)

HSP 1 Score: 223 bits (569), Expect = 8.210e-71
Identity = 111/188 (59.04%), Postives = 145/188 (77.13%), Query Frame = 0

Query:    7 ILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQL--KTSLWKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            +LVVEDD KIA++L DYL+ EG E+L ++DG  A+  V    P +++LD+ LPGLDG+ VC+++R FSD+PI+MLTARIDE DRLLGL++GADDYVCKPFSP EVMARV+A +RR  G+L  + +LW +DD    + W+   L LT +EFRM   LL +PGRVFSR+QLLD +H D+R VSDRA+DSH
Sbjct:    9 VLVVEDDPKIARLLQDYLKREGLESLVLADGAAALQQVTACRPSLVVLDVMLPGLDGVEVCRSIRTFSDVPIIMLTARIDELDRLLGLETGADDYVCKPFSPREVMARVQALLRRSQGRLNRQPALWVVDDEKLRVDWRGHTLGLTLLEFRMFRLLLGRPGRVFSRSQLLDTLHADERDVSDRAVDSH 196

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A2T7UCH6_9BURK (DNA-binding response regulator n=1 Tax=Limnohabitans planktonicus II-D5 TaxID=1293045 RepID=A0A2T7UCH6_9BURK)

HSP 1 Score: 221 bits (564), Expect = 3.770e-70
Identity = 113/188 (60.11%), Postives = 140/188 (74.47%), Query Frame = 0

Query:    7 ILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQ--LKTSLWKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            +LVVEDD KIAQV+LDYL  EG  A +  DG  A+  +    P ++ILD+ LPG+DG+ +CQ VR  S++PI+MLTAR+DE DRLLGLDSGADDYV KPFSP E+MARVR  +RR  GQ  L  SLW++D+A   + W+   LDLT VEFR+ S LL QPGRVFSR+QL+D +H DQR +SDR IDSH
Sbjct:   10 VLVVEDDPKIAQVVLDYLCSEGHSAQASHDGLAAMALIRERMPDLLILDVMLPGMDGLAICQEVRRLSEVPIIMLTARVDEVDRLLGLDSGADDYVTKPFSPRELMARVRNLLRRYKGQWELSQSLWQVDEAGLRVAWRRTWLDLTPVEFRIFSRLLAQPGRVFSRSQLIDGMHADQRDISDRTIDSH 197

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A3N5ESD8_9BURK (Response regulator n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3N5ESD8_9BURK)

HSP 1 Score: 221 bits (564), Expect = 3.890e-70
Identity = 112/193 (58.03%), Postives = 144/193 (74.61%), Query Frame = 0

Query:    2 KSSRKILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQL--KTSLWKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            K+   ++VVEDD KIA++L+DYL  EG  A +I DG QA+   E  PP  M+LDL LPGLDG+ +C+AVR  SD+PI+MLTAR+DE DRL+GL+ GADDYVCKPFSP EV+ARV+A +RR +G+L  +   W+ID+ A  I W+   L LT +EFRM   +L++PGRVF+R  LLD VH+D R VSDRAIDSH
Sbjct:    5 KTRSAVMVVEDDPKIARLLVDYLLNEGLAATAIGDGLQALRAFEADPPSAMVLDLMLPGLDGLALCRAVRATSDVPIVMLTARVDEIDRLIGLEVGADDYVCKPFSPREVVARVKAQLRRAEGRLVRQRPAWEIDEDALRIAWRGHGLPLTPLEFRMFRLMLERPGRVFARATLLDAVHDDLRDVSDRAIDSH 197

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BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A0N1KWI7_9PROT (Transcriptional regulator n=1 Tax=beta proteobacterium AAP65 TaxID=1523424 RepID=A0A0N1KWI7_9PROT)

HSP 1 Score: 220 bits (560), Expect = 1.380e-69
Identity = 112/189 (59.26%), Postives = 141/189 (74.60%), Query Frame = 0

Query:    6 KILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQLKT--SLWKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            ++ VVEDD KIA +L+DYLR  GF A SI+DG  A+  +    P ++ILDL LPGLDG+ +C+A+R F  +P++MLTAR+DE DRLLGLD+GADDYVCKPFSP EV+ARVRA +RR   Q+    + W+I+D    I W  QPL LT +EFR+L +LL QPGRVFSR QLLD +H D R VSDRA+DSH
Sbjct:    7 EVWVVEDDAKIAALLVDYLRHAGFVADSIADGALALERLRARQPSLLILDLMLPGLDGLALCRALRRFCAVPVIMLTARVDEVDRLLGLDTGADDYVCKPFSPPEVIARVRAQLRRARAQVVQGDAAWRINDETLCIAWGTQPLPLTPLEFRLLRTLLLQPGRVFSRQQLLDALHADLRDVSDRAVDSH 195

[Close]

BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Match: A0A4P5U691_9BURK (DNA-binding response regulator n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4P5U691_9BURK)

HSP 1 Score: 218 bits (555), Expect = 1.160e-68
Identity = 110/192 (57.29%), Postives = 141/192 (73.44%), Query Frame = 0

Query:    5 RKILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPLMMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADDYVCKPFSPLEVMARVRAAVRRVDGQLKTSL----WKIDDAAQIIRWQDQPLDLTTVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH 192
            R IL+VEDD+KIA +L +YL + GF      +G  AV  V    P +++LDL LPGLDGI VC AVR FS +PI+MLTAR+DE DRLLGLD+GADDYVCKPFSP EV+AR++A +RR +G+L T L    + +D+  Q I W+  PL LT +EFR++  L+ +PG+VF+R +LLD VHED R VSDRAIDSH
Sbjct:   17 RTILIVEDDLKIADMLANYLHMHGFATAQCGNGLDAVTSVREQAPALILLDLMLPGLDGISVCSAVRAFSAVPIIMLTARVDEIDRLLGLDTGADDYVCKPFSPREVVARIKALLRRSEGRLATGLAPAAFALDEGRQQILWRGLPLPLTPLEFRLMRLLMSRPGQVFARARLLDTVHEDLRDVSDRAIDSH 208

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig98762.23985.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7Y9U7S9_9BURK	5.010e-81	64.43	Two-component system response regulator BaeR n=1 T...	[more]
UPI001917AC3F	1.440e-76	61.34	response regulator n=1 Tax=Rubrivivax sp. A210 Tax...	[more]
A0A523QB79_9BURK	1.670e-73	60.32	Two-component system response regulator BaeR n=2 T...	[more]
A0A257EAJ2_9BURK	5.940e-73	60.32	Two-component system response regulator BaeR n=1 T...	[more]
A0A2M6VPW4_9BURK	1.870e-72	57.73	Two-component system response regulator BaeR n=2 T...	[more]
A0A4V1CIE7_9BURK	8.210e-71	59.04	Response regulator n=2 Tax=Hydrogenophaga sp. PAMC...	[more]
A0A2T7UCH6_9BURK	3.770e-70	60.11	DNA-binding response regulator n=1 Tax=Limnohabita...	[more]
A0A3N5ESD8_9BURK	3.890e-70	58.03	Response regulator n=1 Tax=Burkholderiales bacteri...	[more]
A0A0N1KWI7_9PROT	1.380e-69	59.26	Transcriptional regulator n=1 Tax=beta proteobacte...	[more]
A0A4P5U691_9BURK	1.160e-68	57.29	DNA-binding response regulator n=1 Tax=Comamonadac...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 5..115 e-value: 1.9E-35 score: 133.8
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 7..115 e-value: 3.0E-23 score: 82.1
IPR001789	Signal transduction response regulator, receiver domain	PROSITE	PS50110	RESPONSE_REGULATORY	coord: 6..119 score: 40.502
None	No IPR available	GENE3D	3.40.50.2300		coord: 1..123 e-value: 9.0E-32 score: 111.6
None	No IPR available	PANTHER	PTHR26402:SF731	TRANSCRIPTIONAL REGULATORY PROTEIN BAER	coord: 4..192
IPR001867	OmpR/PhoB-type DNA-binding domain	PFAM	PF00486	Trans_reg_C	coord: 144..192 e-value: 1.3E-10 score: 41.2
IPR001867	OmpR/PhoB-type DNA-binding domain	PROSITE	PS51755	OMPR_PHOB	coord: 123..192 score: 22.035
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 124..192 e-value: 1.3E-15 score: 59.0
IPR039420	Transcriptional regulatory protein WalR-like	PANTHER	PTHR26402	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	coord: 4..192
IPR011006	CheY-like superfamily	SUPERFAMILY	52172	CheY-like	coord: 3..127
IPR016032	Signal transduction response regulator, C-terminal effector	SUPERFAMILY	46894	C-terminal effector domain of the bipartite response regulators	coord: 126..192

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig98762	contig	P-canaliculata_contig98762:2..577 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig98762.23985.1	mRNA_P-canaliculata_contig98762.23985.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig98762 2..577 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig98762.23985.1 ID=prot_P-canaliculata_contig98762.23985.1|Name=mRNA_P-canaliculata_contig98762.23985.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=192bp
MKSSRKILVVEDDVKIAQVLLDYLRVEGFEALSISDGRQAVHYVERTPPL
MMILDLNLPGLDGIGVCQAVREFSDLPILMLTARIDENDRLLGLDSGADD
YVCKPFSPLEVMARVRAAVRRVDGQLKTSLWKIDDAAQIIRWQDQPLDLT
TVEFRMLSSLLQQPGRVFSRTQLLDKVHEDQRSVSDRAIDSH

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001789	Sig_transdc_resp-reg_receiver
IPR001867	OmpR/PhoB-type_DNA-bd
IPR036388	WH-like_DNA-bd_sf
IPR039420	WalR-like
IPR011006	CheY-like_superfamily
IPR016032	Sig_transdc_resp-reg_C-effctor