mRNA_P-canaliculata_contig9873.23981.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9873.23981.1
Unique NamemRNA_P-canaliculata_contig9873.23981.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 4.330e-100
Identity = 196/406 (48.28%), Postives = 243/406 (59.85%), Query Frame = 1
Query:   40 LAGCGDSSFCQLPCECPCYSWRRGVTDGNEGPCAPVQQGDT----LMISGVSCGTSVAVALVCPPGTGRGRASV--------FEWGTCMYGERLSSAAKTGAEKPGTKPSDHQIGLLPSLRHPVEIYPLPLLQLRLRS-------IACGAHFAVAAVETGGCIAWGGGRE-LRALGRGGCDSCSSSTCMSTGKPSMT-LSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHG--SCTPMMVQFPTVASNN------IAANRENSSEA-----SDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            L G GDSSFCQ+PC  P  SW R   D N     P +  D       IS ++CG +  +A V         +++         EWGT +YGERLS+  +T   + G + +         L HP ++  L  L L LRS       IACGAHF VA++E GGCI+WGGGRE  RALGRG C +C    C +   P+   LS P     DWV +PLG GG +V  LAAGDDH +AV  DG+AWAWGRGDCGQLG G+    +    G  +C PM VQ P+ AS        +A+    ++ A     S +  +  L    ACGRDHSA++T DGR+WTFGSGL+GQLG GTVGE +  P+VVDAL GVGTMR DGSFTG+ +VACGAWHTAA+STTGD+YTWGWARFG
Sbjct:    8 LVGVGDSSFCQIPC--PWASWSRQTADANSKS-HPSRNEDVRRVQTKISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLST--ETSVPQQGDERNHASF-----LNHPAQV-ALSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAATGVKSGHGVHGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFG 400          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 1.690e-95
Identity = 200/427 (46.84%), Postives = 240/427 (56.21%), Query Frame = 1
Query:   40 LAGCGDSSFCQLPCECPCYSWRRGVTDGNEGPCAPVQQGDTLM-----ISGVSCGTSVAVALV-------------------CPPGTGRGRASVFEWGTCMYGERLSSAAKTGAEKPGTKPSDHQIGLLPSLRHPVEIYPLPLLQLRLRS-------IACGAHFAVAAVETGGCIAWGGGRE-LRALGRGGCDSCSSSTCMSTGKPSMT-LSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGS-CTPMMVQFPTVASNN------IAANRENSSEA--------------SDNATNP-VLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            L G GDSSFCQ+PC  P  SW R   D  +G        D +      IS ++CG +  +A V                    PP      A + EWGT +YGERLS+  +T   + G + +         L HP  +     L L LRS       IACGAHF VA++E GGCI+WGGGRE  RALGRG C +C    C     P+   LS P   + DWV +PLG GG +V  LAAGDDH +AV  DG AWAWGRGDCGQLG G+  G      GS C PM VQ P+ AS        +A+    ++ A               D    P  L    ACGRDHSA++T DGR+WTFGSGL+GQLG GTVGE +  P+VVDAL GVGTMR DGSFTG+ +VACGAWHTAA+STTGD+YTWGWARFG
Sbjct:    8 LVGVGDSSFCQIPC--PWASWSRQTAD-EKGKSHGSSSNDDVCRVQTKISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPP------AYLLEWGTGLYGERLST--ETSVPQQGDERNQESF-----LNHPAPV-AFSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CHDGSTPAARPLSYPSSSNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGSPDGVDYDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFG 415          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: D0N7V0_PHYIT (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N7V0_PHYIT)

HSP 1 Score: 108 bits (271), Expect = 4.630e-24
Identity = 80/250 (32.00%), Postives = 117/250 (46.80%), Query Frame = 1
Query:  406 RLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            R +++ACG++ A+   ++G  +AWG                +SS  ++     M  +P  ++    V         E+V +AAG  H++AV + G  WAWG    GQLG G  +          TP +V  P                        V A+ +A G  HSAV+   G ++TFG GLY QLG  T  +   +P +VDAL+G+ +         I  VACG WHTAA++ +GDLYTWGW + G
Sbjct:   40 RCKAVACGSNHALVLTDSGRVVAWGW---------------NSSGQVAAASKEMVQTPTIVEFPKAV---------EIVAVAAGGMHSLAVDSCGRVWAWGCNTYGQLGIGCEMDKLH------TPSLVALPA----------------------DVHAQRIAAGWAHSAVILTSGEIFTFGWGLYNQLGHSTT-QSELQPVIVDALQGLDS--------NIVQVACGNWHTAALTESGDLYTWGWGKDG 228          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: W4GLY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.230e-23
Identity = 83/252 (32.94%), Postives = 116/252 (46.03%), Query Frame = 1
Query:  403 LRLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAV-CADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            L +RSIACG    +    TG C+ WG      A                  KP +  SP                 + V  +AAG+ H++A+  A G  ++WG    GQ    ++  + A+  G   P                                +R +A G  HSAV++ DG L+TFG GLY QLG GT     + P+ V +LEGVG ++ +  FTG++ VACGAWHTAA++TTGD+YTWGW + G
Sbjct:   66 LSVRSIACGGSHVLLCTTTGECLWWGDQFNTNAT---------------QPKPVVFPSP----------------DVFVTQVAAGEAHSLALDAATGRVFSWGSNAFGQC---SVTKDEAIVTGVPVPQ-------------------------------SRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTT-NNVFTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHG 250          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.660e-23
Identity = 83/252 (32.94%), Postives = 116/252 (46.03%), Query Frame = 1
Query:  403 LRLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAV-CADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            L +RSIACG    +    TG C+ WG      A                  KP +  SP                 + V  +AAG+ H++A+  A G  ++WG    GQ    ++  + A+  G   P                                +R +A G  HSAV++ DG L+TFG GLY QLG GT     + P+ V +LEGVG ++ +  FTG++ VACGAWHTAA++TTGD+YTWGW + G
Sbjct:   66 LSVRSIACGGSHVLLCTTTGECLWWGDQFNTNAT---------------QPKPVVFPSP----------------DVFVTQVAAGEAHSLALDAATGRVFSWGSNAFGQC---SVTKDEAIVTGVPVPQ-------------------------------SRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTT-NNVFTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHG 250          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: G4YY59_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY59_PHYSP)

HSP 1 Score: 105 bits (261), Expect = 3.850e-22
Identity = 76/250 (30.40%), Postives = 114/250 (45.60%), Query Frame = 1
Query:  406 RLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            R  ++ACG++  +A  ++G  +AWG     +A    G D     T +    P                       +++V +AAG  H++A+ + G  WAWG  + GQLG  + +     QH   +P  V                           +  R +A G  HSA+++  G ++TFG GLY QLG G+  +   +P VVDAL+GV +            VACG WHTAA++ +GDLYTWGW + G
Sbjct:   79 RCSAVACGSNHVLALTDSGRVVAWGWNASAQAAVSAGEDVVRVPTVVEFPTP-----------------------VQIVQVAAGGMHSLALDSSGGVWAWGCNEFGQLGINSEV---ETQH---SPRRVALSA----------------------EIRVRDIAAGWAHSALVSTSGEVFTFGWGLYNQLGHGST-QNEVEPVVVDALQGVDSEAVQ--------VACGNWHTAALTASGDLYTWGWGKDG 268          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A329S126_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S126_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.090e-22
Identity = 83/250 (33.20%), Postives = 123/250 (49.20%), Query Frame = 1
Query:  406 RLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQ-PLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQ-HGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWAR 1149
            R +++ACG++  +A  ++G  +AWG      + G+    +     C+ T                 VV+ P+ A  L++V +AAG  H++AV + G  WAWG    GQLG    IG+   Q H   TP +V  P                        V  + +A G  HSA+++  G ++TFG GLY QLG G+  ++  +P VVDAL G+ +         I  VACG WHTAA++ +GDLYTWGW +
Sbjct:   77 RCKAVACGSNHVLALTDSGRIVAWG----WNSSGQVAAAAVEKVVCVPT-----------------VVEFPIEA--LQIVEVAAGGMHSLAVESSGRVWAWGCNVYGQLG----IGSETEQLH---TPRLVALPA----------------------DVRVQHIAAGWAHSALISMSGEVFTFGWGLYNQLGHGSTQDKL-QPVVVDALRGLDS--------DIVQVACGNWHTAALTASGDLYTWGWGK 265          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A0W8CI08_PHYNI (E3 ubiquitin-protein ligase HERC4 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CI08_PHYNI)

HSP 1 Score: 105 bits (262), Expect = 8.640e-22
Identity = 89/301 (29.57%), Postives = 131/301 (43.52%), Query Frame = 1
Query:  247 VFEWGTCMYGERLSSAAKTGAEKPGTKPSDHQIGLLPSLRHPVEIYPLPLLQLRLRSIACGAHFAVAAVETGGCIAWGGGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWAR 1149
            V  WG   YGER               P +H+         PV++     +  R +++ CG++  +A  ++   IAWG  R                     G+         ++   +V  P+    +E+V +AAG  H++AV + G  WAWG    GQLG    +     QH   TPM+V  P                        V  + VA G  HSA+++  G ++TFG GLY QLG G+  +   +P +VDAL G+ +         I  VACG WHTAA++ +GDLYTWGW +
Sbjct:   47 VVGWGKAFYGER---------------PDEHK-------NVPVKLN----VPERCKTVGCGSNHVLALTDSSRVIAWGWNRS--------------------GQVGAAAIEDVVRVPTFVKFPIE--DVEIVEVAAGGMHSLAVDSRGRVWAWGCNTYGQLGIDFEVKQ---QH---TPMLVALPA----------------------DVRVQHVAAGWAHSALISTSGEVFTFGWGLYNQLGHGST-QNEHEPVLVDALRGLDS--------DIVQVACGNWHTAALTASGDLYTWGWGK 262          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A0P1AA17_PLAHL (FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA17_PLAHL)

HSP 1 Score: 104 bits (259), Expect = 1.990e-21
Identity = 66/173 (38.15%), Postives = 92/173 (53.18%), Query Frame = 1
Query:  637 VVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            +V +AAG  H++A+ +DG  WAWG    GQLG G        +    TP +V+ P        AN              V A+S+A G  H+A+++  G ++TFG GLY QLG G+      +P  V+AL G+ +         I+ VACG WHTAA++ +GDLYTWGW R G
Sbjct:  110 IVEVAAGGMHSLALDSDGRVWAWGCNAYGQLGIGVR------EKQLTTPALVEMP--------AN--------------VQAQSIAAGWAHNAIISTSGEVFTFGWGLYNQLGHGST-HNELQPLAVEALRGLDS--------DIAQVACGTWHTAALTASGDLYTWGWKRDG 245          
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Match: A0A225UDK4_9STRA (Regulator of chromosome condensation (RCC1) (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UDK4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.870e-21
Identity = 65/175 (37.14%), Postives = 93/175 (53.14%), Query Frame = 1
Query:  631 LEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCTPMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSVACGAWHTAAVSTTGDLYTWGWARFG 1155
            + +V +AAG  H++AV + G  WAWG    GQLG G+ +    + H   TP +V  P+                       V A+ VA G  HSA+++  G + +FG GLY QLG G+  +   +P +VDAL+G+ +         I  VACG WHTAA++ +GDLYTWGW + G
Sbjct:   32 VRIVEVAAGGMHSLAVDSCGRMWAWGCNTFGQLGVGSDV---PMLH---TPTLVVLPS----------------------DVRAQHVAAGFAHSAMISTKGEMLSFGWGLYNQLGHGST-QNEHQPIIVDALQGLDS--------DIVQVACGNWHTAALTQSGDLYTWGWGKDG 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9873.23981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN13_ECTSI4.330e-10048.28Regulator of chromosome condensation-like protein ... [more]
A0A6H5KPF1_9PHAE1.690e-9546.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0N7V0_PHYIT4.630e-2432.00Regulator of chromosome condensation (RCC1)-like p... [more]
W4GLY5_9STRA1.230e-2332.94Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GMU7_9STRA3.660e-2332.94Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
G4YY59_PHYSP3.850e-2230.40Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A329S126_9STRA6.090e-2233.20Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8CI08_PHYNI8.640e-2229.57E3 ubiquitin-protein ligase HERC4 n=7 Tax=Phytopht... [more]
A0A0P1AA17_PLAHL1.990e-2138.15FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxI... [more]
A0A225UDK4_9STRA3.870e-2137.14Regulator of chromosome condensation (RCC1) (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9873contigP-canaliculata_contig9873:618..2085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.6
Seed ortholog evalue1.3e-85
Seed eggNOG ortholog2880.D8LN13
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1158
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9873.23981.1prot_P-canaliculata_contig9873.23981.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9873 618..2055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.643471-CDS-P-canaliculata_contig9873:617..8061622817348.643471-CDS-P-canaliculata_contig9873:617..806Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 618..806 -
1693495238.9699132-CDS-P-canaliculata_contig9873:617..8061693495238.9699132-CDS-P-canaliculata_contig9873:617..806Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 618..806 -
1622817348.6605544-CDS-P-canaliculata_contig9873:1116..20551622817348.6605544-CDS-P-canaliculata_contig9873:1116..2055Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 1117..2055 -
1693495238.9830577-CDS-P-canaliculata_contig9873:1116..20551693495238.9830577-CDS-P-canaliculata_contig9873:1116..2055Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9873 1117..2055 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.6798775-UTR-P-canaliculata_contig9873:2055..20851622817348.6798775-UTR-P-canaliculata_contig9873:2055..2085Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 2056..2085 -
1693495238.9984448-UTR-P-canaliculata_contig9873:2055..20851693495238.9984448-UTR-P-canaliculata_contig9873:2055..2085Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9873 2056..2085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9873.23981.1

>prot_P-canaliculata_contig9873.23981.1 ID=prot_P-canaliculata_contig9873.23981.1|Name=mRNA_P-canaliculata_contig9873.23981.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=376bp
MARLAGCGDSSFCQLPCECPCYSWRRGVTDGNEGPCAPVQQGDTLMISGV
SCGTSVAVALVCPPGTGRGRASVFEWGTCMYGERLSSAAKTGAEKPGTKP
SDHQIGLLPSLRHPVEIYPLPLLQLRLRSIACGAHFAVAAVETGGCIAWG
GGRELRALGRGGCDSCSSSTCMSTGKPSMTLSPPELKDADWVVQPLGAGG
LEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTLIGNSALQHGSCT
PMMVQFPTVASNNIAANRENSSEASDNATNPVLARSVACGRDHSAVLTKD
GRLWTFGSGLYGQLGQGTVGERAWKPSVVDALEGVGTMRADGSFTGISSV
ACGAWHTAAVSTTGDLYTWGWARFG*
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mRNA from alignment at P-canaliculata_contig9873:618..2085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9873.23981.1 ID=mRNA_P-canaliculata_contig9873.23981.1|Name=mRNA_P-canaliculata_contig9873.23981.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1468bp|location=Sequence derived from alignment at P-canaliculata_contig9873:618..2085- (Pelvetia canaliculata dioecious)
CAATTAGCGAAGGGTGTAAGTGTACACTCGATGGCTCGACTCGCAGGGTG CGGAGACTCAAGTTTCTGTCAGCTCCCATGCGAATGCCCATGTTATTCGT GGCGTCGTGGGGTCACCGACGGAAACGAGGGACCCTGCGCCCCCGTACAA CAAGGCGATACCCTGATGATATCGGGGGTATCATGCGGAACCTCTGTCGC CGTAGCACTTGTGTGTCCTCCCGGCACCGGTCGAGGGAGGGCCAGTGTGT TCGAATGGGGAACATGCATGTACGGAGAAAGACTATCGTCGGCAGCGAAA ACGGGAGCCGAGAAGCCGGGGACGAAGCCGAGTGACCATCAAATCGGACT GCTCCCATCACTTCGACATCCAGTGGAGATATACCCTCTGCCACTTCTCC AGCTGCGGCTGCGATCTATCGCTTGCGGGGCACATTTCGCCGTCGCAGCC GTGGAGACCGGAGGCTGTATCGCGTGGGGTGGAGGACGAGAGCTGAGGGC TTTAGGTCGTGGTGGCTGTGACAGCTGCAGCTCCTCGACATGTATGAGCA CTGGTAAACCTTCGATGACCCTATCCCCTCCCGAGTTAAAAGATGCGGAC TGGGTCGTCCAACCCTTGGGTGCAGGAGGGCTCGAGGTGGTCTGCTTGGC GGCGGGGGACGATCACGCCGTCGCAGTCTGCGCGGATGGGAATGCTTGGG CATGGGGCCGCGGGGATTGCGGTCAACTCGGCTGCGGCACCCTCATAGGG AACAGTGCTCTTCAGCACGGCAGCTGCACCCCCATGATGGTGCAGTTCCC TACTGTTGCTTCTAATAATATAGCTGCCAATCGTGAAAATAGCAGCGAGG CCAGCGATAACGCGACAAACCCGGTATTGGCCCGTTCGGTCGCGTGCGGG CGTGATCACAGCGCGGTGCTAACGAAAGATGGCCGATTATGGACGTTTGG AAGCGGACTTTATGGGCAGGTGTGATCTACCGAAGGAATGGATGAACTTT ATGTCCATCAGACCGGTGTCCCGACAGCAGTTTCGAGGGACTTTCGGCGC CTGTCCGCACGGTCGACGAGAGAAACACAGTAATGCTTCTCCTTTTTCCA CCTCGGTGAAAGCCTTTGCGCGGGCTGCTTGAGTCAACGATAATTTCCTA AAAATTGACGCCGTTTGCCACATTGACCAACAACCTTGAGTATTGACACT CGTCGCGCGGAGTAACAGGAACTACTTACCTGGTACAAAGGGAGTGTTTG CCCCTGCTGCCCTCGTTCGAATGAACCAGCTCGGCCAGGGCACCGTCGGC GAGAGAGCGTGGAAGCCGAGCGTCGTCGATGCCTTGGAAGGCGTCGGCAC GATGAGAGCGGACGGATCGTTCACAGGAATTTCTTCGGTGGCGTGTGGGG CGTGGCACACTGCGGCAGTCTCTACCACCGGAGATTTGTACACCTGGGGA TGGGCCCGCTTTGGGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9873:618..2085-

>mRNA_P-canaliculata_contig9873.23981.1 ID=mRNA_P-canaliculata_contig9873.23981.1|Name=mRNA_P-canaliculata_contig9873.23981.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at P-canaliculata_contig9873:618..2085- (Pelvetia canaliculata dioecious)
ATGGCTCGACTCGCAGGGTGCGGAGACTCAAGTTTCTGTCAGCTCCCATG
CGAATGCCCATGTTATTCGTGGCGTCGTGGGGTCACCGACGGAAACGAGG
GACCCTGCGCCCCCGTACAACAAGGCGATACCCTGATGATATCGGGGGTA
TCATGCGGAACCTCTGTCGCCGTAGCACTTGTGTGTCCTCCCGGCACCGG
TCGAGGGAGGGCCAGTGTGTTCGAATGGGGAACATGCATGTACGGAGAAA
GACTATCGTCGGCAGCGAAAACGGGAGCCGAGAAGCCGGGGACGAAGCCG
AGTGACCATCAAATCGGACTGCTCCCATCACTTCGACATCCAGTGGAGAT
ATACCCTCTGCCACTTCTCCAGCTGCGGCTGCGATCTATCGCTTGCGGGG
CACATTTCGCCGTCGCAGCCGTGGAGACCGGAGGCTGTATCGCGTGGGGT
GGAGGACGAGAGCTGAGGGCTTTAGGTCGTGGTGGCTGTGACAGCTGCAG
CTCCTCGACATGTATGAGCACTGGTAAACCTTCGATGACCCTATCCCCTC
CCGAGTTAAAAGATGCGGACTGGGTCGTCCAACCCTTGGGTGCAGGAGGG
CTCGAGGTGGTCTGCTTGGCGGCGGGGGACGATCACGCCGTCGCAGTCTG
CGCGGATGGGAATGCTTGGGCATGGGGCCGCGGGGATTGCGGTCAACTCG
GCTGCGGCACCCTCATAGGGAACAGTGCTCTTCAGCACGGCAGCTGCACC
CCCATGATGGTGCAGTTCCCTACTGTTGCTTCTAATAATATAGCTGCCAA
TCGTGAAAATAGCAGCGAGGCCAGCGATAACGCGACAAACCCGGTATTGG
CCCGTTCGGTCGCGTGCGGGCGTGATCACAGCGCGGTGCTAACGAAAGAT
GGCCGATTATGGACGTTTGGAAGCGGACTTTATGGGCAGATGGCTCGACT
CGCAGGGTGCGGAGACTCAAGTTTCTGTCAGCTCCCATGCGAATGCCCAT
GTTATTCGTGGCGTCGTGGGGTCACCGACGGAAACGAGGGACCCTGCGCC
CCCGTACAACAAGGCGATACCCTGATGATATCGGGGGTATCATGCGGAAC
CTCTGTCGCCGTAGCACTTGTGTGTCCTCCCGGCACCGGTCGAGGGAGGG
CCAGTGTGTTCGAATGGGGAACATGCATGTACGGAGAAAGACTATCGTCG
GCAGCGAAAACGGGAGCCGAGAAGCCGGGGACGAAGCCGAGTGACCATCA
AATCGGACTGCTCCCATCACTTCGACATCCAGTGGAGATATACCCTCTGC
CACTTCTCCAGCTGCGGCTGCGATCTATCGCTTGCGGGGCACATTTCGCC
GTCGCAGCCGTGGAGACCGGAGGCTGTATCGCGTGGGGTGGAGGACGAGA
GCTGAGGGCTTTAGGTCGTGGTGGCTGTGACAGCTGCAGCTCCTCGACAT
GTATGAGCACTGGTAAACCTTCGATGACCCTATCCCCTCCCGAGTTAAAA
GATGCGGACTGGGTCGTCCAACCCTTGGGTGCAGGAGGGCTCGAGGTGGT
CTGCTTGGCGGCGGGGGACGATCACGCCGTCGCAGTCTGCGCGGATGGGA
ATGCTTGGGCATGGGGCCGCGGGGATTGCGGTCAACTCGGCTGCGGCACC
CTCATAGGGAACAGTGCTCTTCAGCACGGCAGCTGCACCCCCATGATGGT
GCAGTTCCCTACTGTTGCTTCTAATAATATAGCTGCCAATCGTGAAAATA
GCAGCGAGGCCAGCGATAACGCGACAAACCCGGTATTGGCCCGTTCGGTC
GCGTGCGGGCGTGATCACAGCGCGGTGCTAACGAAAGATGGCCGATTATG
GACGTTTGGAAGCGGACTTTATGGGCAGCTCGGCCAGGGCACCGTCGGCG
AGAGAGCGTGGAAGCCGAGCGTCGTCGATGCCTTGGAAGGCGTCGGCACG
ATGAGAGCGGACGGATCGTTCACAGGAATTTCTTCGGTGGCGTGTGGGGC
GTGGCACACTGCGGCAGTCTCTACCACCGGAGATTTGTACACCTGGGGAT
GGGCCCGCTTTGGGTGACTCGGCCAGGGCACCGTCGGCGAGAGAGCGTGG
AAGCCGAGCGTCGTCGATGCCTTGGAAGGCGTCGGCACGATGAGAGCGGA
CGGATCGTTCACAGGAATTTCTTCGGTGGCGTGTGGGGCGTGGCACACTG
CGGCAGTCTCTACCACCGGAGATTTGTACACCTGGGGATGGGCCCGCTTT
GGGTGA
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