prot_P-canaliculata_contig98619.23969.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig98619.23969.1
Unique Name	prot_P-canaliculata_contig98619.23969.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	96

Homology

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI00167247B0 (shikimate kinase n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167247B0)

HSP 1 Score: 175 bits (443), Expect = 6.260e-54
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0

Query:    1 MPLHIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            MPL I+KPIALVGLMGVGKTTVGRRLAKRL+R F+DSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLL   PPLILATGGGAFIHP TREL
Sbjct:    1 MPLQIEKPIALVGLMGVGKTTVGRRLAKRLSREFDDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLEVQPPLILATGGGAFIHPPTREL 96

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI000412AF15 (shikimate kinase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000412AF15)

HSP 1 Score: 131 bits (329), Expect = 8.590e-37
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 0

Query:    7 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            +PIALVGLMGVGKTTVGRRLAK+L R F DSDD IE ASGRTVAGYFRDHGEA+FR GE RVI+RLL +  P+ILATGGGAFI   TR++
Sbjct:    8 RPIALVGLMGVGKTTVGRRLAKKLGRDFYDSDDEIELASGRTVAGYFRDHGEAEFRKGERRVIERLL-DGTPIILATGGGAFIPNETRKI 96

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A8J3CRK1_9PROT (Shikimate kinase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CRK1_9PROT)

HSP 1 Score: 131 bits (330), Expect = 1.120e-36
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 0

Query:    7 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            +PIALVGLMGVGKTTVGRRLAK L+R F DSD+ IE+ASGRTVAGYFRDHGEA FR+GE RV++RL+   P ++LATGGGAFIHP T  +
Sbjct:   24 RPIALVGLMGVGKTTVGRRLAKALDRDFYDSDEEIERASGRTVAGYFRDHGEAAFRNGERRVVERLIAL-PDIVLATGGGAFIHPTTHAI 112

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A848V1Y5_9PROT (Shikimate kinase n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V1Y5_9PROT)

HSP 1 Score: 126 bits (317), Expect = 8.580e-35
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 0

Query:    7 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            +PIALVGLMGVGKTTVGRRL++RL   F DSD+ IEQASGRTVAGYFRDHGE DFR GE RVI+R+L +  PL+LATGGGAFI   TR +
Sbjct:   11 RPIALVGLMGVGKTTVGRRLSRRLGMPFYDSDEEIEQASGRTVAGYFRDHGEEDFRAGERRVIERIL-DGRPLVLATGGGAFIPDETRAI 99

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A520XMF7_9ACTN (Shikimate kinase n=2 Tax=Bacteria TaxID=2 RepID=A0A520XMF7_9ACTN)

HSP 1 Score: 124 bits (310), Expect = 6.140e-34
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 0

Query:    7 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            + IALVGLMGVGKTT+GRRLAKRL+  F DSDD IEQASGRTV GYF+D+GE  FRDGE RVI+RLL + P L+L+TGGGAFI  ATR++
Sbjct:    7 RSIALVGLMGVGKTTIGRRLAKRLDLPFYDSDDEIEQASGRTVKGYFKDYGEEAFRDGERRVIERLLGDGP-LVLSTGGGAFIPEATRKI 95

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A420WF20_9PROT (Shikimate kinase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WF20_9PROT)

HSP 1 Score: 123 bits (308), Expect = 1.770e-33
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 0

Query:    6 DKP-IALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLT---EHPPLILATGGGAFIHPATREL 96
            D P IAL+G+MGVGKTT+GRRLA+RL+R F DSD  IE+ASGRTVAGYFRDHGEA FR+GE RVI RL+    +   +ILATGGGAF H  TRE+
Sbjct:   10 DAPNIALIGMMGVGKTTIGRRLARRLSREFFDSDHEIEKASGRTVAGYFRDHGEAQFREGEKRVINRLVDPDIKKASIILATGGGAFTHEETREI 104

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI00035C4E49 (shikimate kinase n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00035C4E49)

HSP 1 Score: 119 bits (299), Expect = 3.440e-32
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 0

Query:    4 HIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
             + + IALVG+MGVGKTT+GRRLAKRLN  F DSD  IE+ASGRT+ GYFRDHG+  FR+GE +VI RL+ E  P+ILATGGGAFI   TR +
Sbjct:    8 QLAQSIALVGMMGVGKTTIGRRLAKRLNMPFYDSDSEIERASGRTIKGYFRDHGQDAFREGERKVISRLI-EGTPIILATGGGAFIPELTRNI 99

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A2G2J3K2_9PROT (Shikimate kinase n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J3K2_9PROT)

HSP 1 Score: 119 bits (298), Expect = 4.610e-32
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 0

Query:    7 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            + I++VGLMGVGKTT+GRRLAKRL   F DSDD IE+ASGRT+ GYF+D+GEA FR GE RVI+RLL +  PLIL+TGGGAFI   TRE+
Sbjct:   10 RSISIVGLMGVGKTTIGRRLAKRLELPFFDSDDEIEKASGRTIKGYFKDYGEAAFRSGEQRVIERLL-DGSPLILSTGGGAFIPEETREI 98

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A2U2BS13_9PROT (Shikimate kinase n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BS13_9PROT)

HSP 1 Score: 117 bits (292), Expect = 4.040e-31
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 0

Query:    5 IDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            +++ I LVGLMG GKTTVGRRLA+RL R F+D+D  IE+A+GR+V   F D GE+ FRDGE +VI RLL E PP++LA GGGAF+ P TR L
Sbjct:   10 LERTIVLVGLMGAGKTTVGRRLARRLGRPFKDADAEIERAAGRSVPDIFADFGESAFRDGERKVIARLLEEEPPMVLAVGGGAFVDPDTRRL 101

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BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A7C5R853_9PROT (Shikimate kinase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5R853_9PROT)

HSP 1 Score: 116 bits (291), Expect = 4.870e-31
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 0

Query:    4 HI-DKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 96
            HI  + IALVGLMGVGKTT+GRRLAKRL   F D+DD IE+ASGRTV GYF+D+GE  FR GE+RVI RLL    P++LATGGGAFI   TR L
Sbjct:    7 HIRTQTIALVGLMGVGKTTIGRRLAKRLEMPFYDTDDEIEKASGRTVKGYFKDYGEEAFRAGEYRVIDRLLGG-APMVLATGGGAFIPENTRAL 99

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI00167247B0	6.260e-54	90.63	shikimate kinase n=1 Tax=Litorimonas cladophorae T...	[more]
UPI000412AF15	8.590e-37	76.67	shikimate kinase n=1 Tax=Hellea balneolensis TaxID...	[more]
A0A8J3CRK1_9PROT	1.120e-36	73.33	Shikimate kinase n=1 Tax=Algimonas arctica TaxID=1...	[more]
A0A848V1Y5_9PROT	8.580e-35	73.33	Shikimate kinase n=1 Tax=Hellea sp. TaxID=2715692 ...	[more]
A0A520XMF7_9ACTN	6.140e-34	72.22	Shikimate kinase n=2 Tax=Bacteria TaxID=2 RepID=A0...	[more]
A0A420WF20_9PROT	1.770e-33	68.42	Shikimate kinase n=1 Tax=Litorimonas taeanensis Ta...	[more]
UPI00035C4E49	3.440e-32	65.59	shikimate kinase n=1 Tax=Robiginitomaculum antarct...	[more]
A0A2G2J3K2_9PROT	4.610e-32	68.89	Shikimate kinase n=1 Tax=Robiginitomaculum sp. Tax...	[more]
A0A2U2BS13_9PROT	4.040e-31	61.96	Shikimate kinase n=1 Tax=Marinicauda salina TaxID=...	[more]
A0A7C5R853_9PROT	4.870e-31	68.09	Shikimate kinase n=1 Tax=Hellea balneolensis TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01100	SHIKIMTKNASE	coord: 9..24 score: 56.73 coord: 80..89 score: 48.46 coord: 33..46 score: 39.01 coord: 61..69 score: 46.15
None	No IPR available	GENE3D	3.40.50.300		coord: 2..96 e-value: 1.6E-31 score: 111.8
None	No IPR available	PANTHER	PTHR21087	SHIKIMATE KINASE	coord: 7..95
None	No IPR available	PANTHER	PTHR21087:SF16	SHIKIMATE KINASE 1, CHLOROPLASTIC	coord: 7..95
IPR031322	Shikimate kinase/gluconokinase	PFAM	PF01202	SKI	coord: 15..96 e-value: 5.7E-27 score: 94.8
IPR023000	Shikimate kinase, conserved site	PROSITE	PS01128	SHIKIMATE_KINASE	coord: 62..88
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 7..87

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig98619	contig	P-canaliculata_contig98619:2..289 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig98619.23969.1	mRNA_P-canaliculata_contig98619.23969.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig98619 2..289 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig98619.23969.1 ID=prot_P-canaliculata_contig98619.23969.1|Name=mRNA_P-canaliculata_contig98619.23969.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp
MPLHIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVA
GYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR031322	Shikimate/glucono_kinase
IPR023000	Shikimate_kinase_CS
IPR027417	P-loop_NTPase