mRNA_P-canaliculata_contig98619.23969.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI00167247B0 (shikimate kinase n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167247B0) HSP 1 Score: 175 bits (443), Expect = 6.260e-54 Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 Query: 1 MPLHIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
MPL I+KPIALVGLMGVGKTTVGRRLAKRL+R F+DSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLL PPLILATGGGAFIHP TREL
Sbjct: 1 MPLQIEKPIALVGLMGVGKTTVGRRLAKRLSREFDDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLEVQPPLILATGGGAFIHPPTREL 96
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI000412AF15 (shikimate kinase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000412AF15) HSP 1 Score: 131 bits (329), Expect = 8.590e-37 Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 1 Query: 19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
+PIALVGLMGVGKTTVGRRLAK+L R F DSDD IE ASGRTVAGYFRDHGEA+FR GE RVI+RLL + P+ILATGGGAFI TR++
Sbjct: 8 RPIALVGLMGVGKTTVGRRLAKKLGRDFYDSDDEIELASGRTVAGYFRDHGEAEFRKGERRVIERLL-DGTPIILATGGGAFIPNETRKI 96
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A8J3CRK1_9PROT (Shikimate kinase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CRK1_9PROT) HSP 1 Score: 131 bits (330), Expect = 1.120e-36 Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1 Query: 19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
+PIALVGLMGVGKTTVGRRLAK L+R F DSD+ IE+ASGRTVAGYFRDHGEA FR+GE RV++RL+ P ++LATGGGAFIHP T +
Sbjct: 24 RPIALVGLMGVGKTTVGRRLAKALDRDFYDSDEEIERASGRTVAGYFRDHGEAAFRNGERRVVERLIAL-PDIVLATGGGAFIHPTTHAI 112
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A848V1Y5_9PROT (Shikimate kinase n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V1Y5_9PROT) HSP 1 Score: 126 bits (317), Expect = 8.580e-35 Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 1 Query: 19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
+PIALVGLMGVGKTTVGRRL++RL F DSD+ IEQASGRTVAGYFRDHGE DFR GE RVI+R+L + PL+LATGGGAFI TR +
Sbjct: 11 RPIALVGLMGVGKTTVGRRLSRRLGMPFYDSDEEIEQASGRTVAGYFRDHGEEDFRAGERRVIERIL-DGRPLVLATGGGAFIPDETRAI 99
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A520XMF7_9ACTN (Shikimate kinase n=2 Tax=Bacteria TaxID=2 RepID=A0A520XMF7_9ACTN) HSP 1 Score: 124 bits (310), Expect = 6.140e-34 Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 1 Query: 19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
+ IALVGLMGVGKTT+GRRLAKRL+ F DSDD IEQASGRTV GYF+D+GE FRDGE RVI+RLL + P L+L+TGGGAFI ATR++
Sbjct: 7 RSIALVGLMGVGKTTIGRRLAKRLDLPFYDSDDEIEQASGRTVKGYFKDYGEEAFRDGERRVIERLLGDGP-LVLSTGGGAFIPEATRKI 95
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A420WF20_9PROT (Shikimate kinase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WF20_9PROT) HSP 1 Score: 123 bits (308), Expect = 1.770e-33 Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1 Query: 16 DKP-IALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLT---EHPPLILATGGGAFIHPATREL 288
D P IAL+G+MGVGKTT+GRRLA+RL+R F DSD IE+ASGRTVAGYFRDHGEA FR+GE RVI RL+ + +ILATGGGAF H TRE+
Sbjct: 10 DAPNIALIGMMGVGKTTIGRRLARRLSREFFDSDHEIEKASGRTVAGYFRDHGEAQFREGEKRVINRLVDPDIKKASIILATGGGAFTHEETREI 104
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: UPI00035C4E49 (shikimate kinase n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00035C4E49) HSP 1 Score: 119 bits (299), Expect = 3.440e-32 Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 1 Query: 10 HIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
+ + IALVG+MGVGKTT+GRRLAKRLN F DSD IE+ASGRT+ GYFRDHG+ FR+GE +VI RL+ E P+ILATGGGAFI TR +
Sbjct: 8 QLAQSIALVGMMGVGKTTIGRRLAKRLNMPFYDSDSEIERASGRTIKGYFRDHGQDAFREGERKVISRLI-EGTPIILATGGGAFIPELTRNI 99
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A2G2J3K2_9PROT (Shikimate kinase n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J3K2_9PROT) HSP 1 Score: 119 bits (298), Expect = 4.610e-32 Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1 Query: 19 KPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
+ I++VGLMGVGKTT+GRRLAKRL F DSDD IE+ASGRT+ GYF+D+GEA FR GE RVI+RLL + PLIL+TGGGAFI TRE+
Sbjct: 10 RSISIVGLMGVGKTTIGRRLAKRLELPFFDSDDEIEKASGRTIKGYFKDYGEAAFRSGEQRVIERLL-DGSPLILSTGGGAFIPEETREI 98
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A2U2BS13_9PROT (Shikimate kinase n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BS13_9PROT) HSP 1 Score: 117 bits (292), Expect = 4.040e-31 Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1 Query: 13 IDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
+++ I LVGLMG GKTTVGRRLA+RL R F+D+D IE+A+GR+V F D GE+ FRDGE +VI RLL E PP++LA GGGAF+ P TR L
Sbjct: 10 LERTIVLVGLMGAGKTTVGRRLARRLGRPFKDADAEIERAAGRSVPDIFADFGESAFRDGERKVIARLLEEEPPMVLAVGGGAFVDPDTRRL 101
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Match: A0A7C5R853_9PROT (Shikimate kinase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5R853_9PROT) HSP 1 Score: 116 bits (291), Expect = 4.870e-31 Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 1 Query: 10 HI-DKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAGYFRDHGEADFRDGEFRVIKRLLTEHPPLILATGGGAFIHPATREL 288
HI + IALVGLMGVGKTT+GRRLAKRL F D+DD IE+ASGRTV GYF+D+GE FR GE+RVI RLL P++LATGGGAFI TR L
Sbjct: 7 HIRTQTIALVGLMGVGKTTIGRRLAKRLEMPFYDTDDEIEKASGRTVKGYFKDYGEEAFRAGEYRVIDRLLGG-APMVLATGGGAFIPENTRAL 99 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98619.23969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98619.23969.1 >prot_P-canaliculata_contig98619.23969.1 ID=prot_P-canaliculata_contig98619.23969.1|Name=mRNA_P-canaliculata_contig98619.23969.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp MPLHIDKPIALVGLMGVGKTTVGRRLAKRLNRGFEDSDDAIEQASGRTVAback to top mRNA from alignment at P-canaliculata_contig98619:2..289- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98619.23969.1 ID=mRNA_P-canaliculata_contig98619.23969.1|Name=mRNA_P-canaliculata_contig98619.23969.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at P-canaliculata_contig98619:2..289- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98619:2..289- >mRNA_P-canaliculata_contig98619.23969.1 ID=mRNA_P-canaliculata_contig98619.23969.1|Name=mRNA_P-canaliculata_contig98619.23969.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig98619:2..289- (Pelvetia canaliculata dioecious)back to top |