mRNA_P-canaliculata_contig98469.23951.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98469.23951.1
Unique NamemRNA_P-canaliculata_contig98469.23951.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 6.620e-25
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPS 186
            +V+RTAQYGCNCRG GGNGGCGEFDI++AVIG  ++DM+FT VYDFKG G PG  ++F RPS
Sbjct:  598 KVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDHADMMFTTVYDFKGTGAPGHGKYFNRPS 659
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.190e-16
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 VLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFT 123
            +LRTAQYGCNCRG GGNGGCGEFDI++ ++GN YSDMLFT
Sbjct:  489 ILRTAQYGCNCRGAGGNGGCGEFDIIEGIVGNKYSDMLFT 528
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A1X6MZQ9_9APHY (Uncharacterized protein n=2 Tax=Postia placenta TaxID=104341 RepID=A0A1X6MZQ9_9APHY)

HSP 1 Score: 79.7 bits (195), Expect = 6.780e-16
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPSVSDI 198
            QV+R AQYGCNCRG GGNGGCGE DIL+ + G+   D   + +Y FKGA G G S F  RP+  D+
Sbjct:  228 QVVRAAQYGCNCRGEGGNGGCGELDILEVIAGSDI-DNAISEIYSFKGATGSGASAF-PRPTGDDV 291
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A165D0F9_9APHY (Uncharacterized protein n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165D0F9_9APHY)

HSP 1 Score: 79.3 bits (194), Expect = 8.120e-16
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPSVS 192
            QV+R AQYGCNCRG GG+GGCGE D+L+ V+ N  +    + +Y FKGA G G + +F RP+ S
Sbjct:  204 QVVRAAQYGCNCRGEGGDGGCGELDVLE-VLANSDTTQAISEIYSFKGATGTGSAEYFARPTSS 266
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A2R6NVP8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NVP8_9APHY)

HSP 1 Score: 79.3 bits (194), Expect = 9.370e-16
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPS--------VSDIHTRMLLVV 222
            QV+R AQYGCNCRGMGG+GGCGE DI + ++ N  S    + +Y FKGA G G   +F RP         + DI T  + +V
Sbjct:  232 QVVRAAQYGCNCRGMGGDGGCGEIDIAETLVAN--SPQAISELYSFKGATGTGDGNYFPRPDNGRDTLAVIFDIKTDAISIV 311
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A371D7V1_9APHY (Uncharacterized protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A371D7V1_9APHY)

HSP 1 Score: 78.2 bits (191), Expect = 2.460e-15
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPSVSDIHTRMLL 216
            QV+RTA+YGCNCRG+G  GGCGE DIL+ +IG   ++ + + +Y FKGA G G + FF RP+   +   ++L
Sbjct:  230 QVVRTAEYGCNCRGIGSPGGCGELDILETLIGADPNNGI-SEIYSFKGATGSGNNNFFARPTGDKVTYAVVL 300
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A0C3NUK6_PHLGI (Uncharacterized protein n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3NUK6_PHLGI)

HSP 1 Score: 77.8 bits (190), Expect = 3.400e-15
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPSVSDIHT 204
            QV+R AQYGCNCRG+GG+GGCGE DI + ++ N  S    + +Y FKGA G G   +F RP+     T
Sbjct:  232 QVVRAAQYGCNCRGVGGDGGCGEIDIAETLVAN--SVQAVSEIYSFKGATGSGDGNYFARPAAGAAAT 297
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A5C2S7Z1_9APHY (Uncharacterized protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2S7Z1_9APHY)

HSP 1 Score: 77.4 bits (189), Expect = 4.670e-15
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPS 186
            Q++R+AQYGCNCRG+G  GGCGE DIL+ ++G   ++ + + +Y FKGA G G S FF RP+
Sbjct:  230 QIVRSAQYGCNCRGVGSPGGCGELDILETLVGADPNNGV-SEIYSFKGATGSGNSNFFARPT 290
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A401GFD8_9APHY (Cell wall protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GFD8_9APHY)

HSP 1 Score: 76.6 bits (187), Expect = 9.090e-15
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPSVSDIHT 204
            QV+R AQYGCNCRGMGGNGGCGE DIL+ + G+  +  + + +Y F GA G G    F RPS +  +T
Sbjct:  232 QVVRAAQYGCNCRGMGGNGGCGELDILEVLSGSSPNQAI-SELYSFMGATGSG-GESFARPSSASTYT 297
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BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Match: A0A165PHX7_9AGAM (Uncharacterized protein n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165PHX7_9AGAM)

HSP 1 Score: 76.6 bits (187), Expect = 9.180e-15
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAGGPGLSRFFERPS 186
            Q++R+AQYGCNCRG+G +GGCGE D+++ + G   +  + + VY FKGA G G S +F RP+
Sbjct:  231 QIVRSAQYGCNCRGVGADGGCGELDVVEVISGQDQNQGI-SEVYSFKGATGTGSSAYFTRPT 291
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98469.23951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU0_ECTSI6.620e-2570.97Putative serine rich protein n=2 Tax=Ectocarpus Ta... [more]
D8LG92_ECTSI1.190e-1680.00F5/8 type C domain protein n=1 Tax=Ectocarpus sili... [more]
A0A1X6MZQ9_9APHY6.780e-1656.06Uncharacterized protein n=2 Tax=Postia placenta Ta... [more]
A0A165D0F9_9APHY8.120e-1653.13Uncharacterized protein n=1 Tax=Laetiporus sulphur... [more]
A0A2R6NVP8_9APHY9.370e-1646.34Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A371D7V1_9APHY2.460e-1548.61Uncharacterized protein n=2 Tax=Polyporus TaxID=56... [more]
A0A0C3NUK6_PHLGI3.400e-1550.00Uncharacterized protein n=1 Tax=Phlebiopsis gigant... [more]
A0A5C2S7Z1_9APHY4.670e-1553.23Uncharacterized protein n=2 Tax=Lentinus tigrinus ... [more]
A0A401GFD8_9APHY9.090e-1552.94Cell wall protein n=1 Tax=Sparassis crispa TaxID=1... [more]
A0A165PHX7_9AGAM9.180e-1550.00Uncharacterized protein n=1 Tax=Neolentinus lepide... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98469contigP-canaliculata_contig98469:719..943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.793427-CDS-P-canaliculata_contig98469:718..9431622817345.793427-CDS-P-canaliculata_contig98469:718..943Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98469 719..943 -
1693495237.0566938-CDS-P-canaliculata_contig98469:718..9431693495237.0566938-CDS-P-canaliculata_contig98469:718..943Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98469 719..943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98469.23951.1prot_P-canaliculata_contig98469.23951.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98469 719..943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98469.23951.1

>prot_P-canaliculata_contig98469.23951.1 ID=prot_P-canaliculata_contig98469.23951.1|Name=mRNA_P-canaliculata_contig98469.23951.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=75bp
QVLRTAQYGCNCRGMGGNGGCGEFDILKAVIGNPYSDMLFTHVYDFKGAG
GPGLSRFFERPSVSDIHTRMLLVV*
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mRNA from alignment at P-canaliculata_contig98469:719..943-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98469.23951.1 ID=mRNA_P-canaliculata_contig98469.23951.1|Name=mRNA_P-canaliculata_contig98469.23951.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at P-canaliculata_contig98469:719..943- (Pelvetia canaliculata dioecious)
CAGGTGTTGAGAACAGCTCAATACGGTTGCAACTGCCGCGGCATGGGGGG
CAACGGAGGATGTGGCGAGTTCGATATACTAAAAGCTGTTATTGGCAACC
CTTACAGCGACATGCTGTTTACGCATGTGTATGACTTCAAGGGGGCAGGT
GGTCCCGGTTTATCGAGGTTCTTCGAGCGACCTTCGGTAAGCGATATTCA
CACGCGTATGCTACTTGTCGTATGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98469:719..943-

>mRNA_P-canaliculata_contig98469.23951.1 ID=mRNA_P-canaliculata_contig98469.23951.1|Name=mRNA_P-canaliculata_contig98469.23951.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at P-canaliculata_contig98469:719..943- (Pelvetia canaliculata dioecious)
CAGGTGTTGAGAACAGCTCAATACGGTTGCAACTGCCGCGGCATGGGGGG
CAACGGAGGATGTGGCGAGTTCGATATACTAAAAGCTGTTATTGGCAACC
CTTACAGCGACATGCTGTTTACGCATGTGTATGACTTCAAGGGGGCAGGT
GGTCCCGGTTTATCGAGGTTCTTCGAGCGACCTTCGGTAAGCGATATTCA
CACGCGTATGCTACTTGTCGTATGACAGGTGTTGAGAACAGCTCAATACG
GTTGCAACTGCCGCGGCATGGGGGGCAACGGAGGATGTGGCGAGTTCGAT
ATACTAAAAGCTGTTATTGGCAACCCTTACAGCGACATGCTGTTTACGCA
TGTGTATGACTTCAAGGGGGCAGGTGGTCCCGGTTTATCGAGGTTCTTCG
AGCGACCTTCGGTAAGCGATATTCACACGCGTATGCTACTTGTCGTATGA
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