prot_P-canaliculata_contig98446.23949.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98446.23949.1
Unique Nameprot_P-canaliculata_contig98446.23949.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length187
Homology
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BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Match: A0A4Q6B794_9PROT (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6B794_9PROT)

HSP 1 Score: 61.6 bits (148), Expect = 4.840e-8
Identity = 46/198 (23.23%), Postives = 94/198 (47.47%), Query Frame = 0 
Query:    3 SLIVLLGAVGCI-PVGEPPINQEVVAMRNKVVSLESNLNNKTNQ-------QLAVTDARTQQIELDLNQIKGRLDTLEVAMRTGSMPGMVE-----DEFAQATSLPARVKELEA----IVSSLQGGEKAGRGFNSRTSTSQPLQQQTTSKKLRLSDLRQAFIKGKYSFIADNADLVAKGLTSKADQTELTYLQARSYH 183
            SL++ L   GCI P  E  +  ++ +++ ++V++E  + N++ +       Q A    R  +I +++ +IKG +D+L V + TG +PG  E           T + AR+  +E     I++++    +  +      S     ++++ +K     D++ AF    Y  IAD+ + +      K  + E T++ A SY+
Sbjct:   11 SLLLSLSLTGCITPAEERQLKDDIFSLQTRLVAMEGQVGNQSKEITTQASRQEASVSTRLDKISIEIQRIKGDIDSLRVGVVTGQLPGGAEGTQETSASKSMTDIVARIDAIEENQNRIIAAIDKAIETKKPEKKSESAESKERKESEAKLKTFKDMKTAFDNKNYKLIADHGEKLVGTFKQKKTKQEATFMLAESYY 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4Q6B794_9PROT4.840e-823.23Tetratricopeptide repeat protein n=1 Tax=Proteobac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 25..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..187
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..13
score: 0.539

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98446contigP-canaliculata_contig98446:6..566 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98446.23949.1mRNA_P-canaliculata_contig98446.23949.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98446 6..566 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98446.23949.1 ID=prot_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=187bp
MSSLIVLLGAVGCIPVGEPPINQEVVAMRNKVVSLESNLNNKTNQQLAVT
DARTQQIELDLNQIKGRLDTLEVAMRTGSMPGMVEDEFAQATSLPARVKE
LEAIVSSLQGGEKAGRGFNSRTSTSQPLQQQTTSKKLRLSDLRQAFIKGK
YSFIADNADLVAKGLTSKADQTELTYLQARSYHFMNR
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