mRNA_P-canaliculata_contig98446.23949.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Match: A0A4Q6B794_9PROT (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6B794_9PROT) HSP 1 Score: 61.6 bits (148), Expect = 4.840e-8 Identity = 46/198 (23.23%), Postives = 94/198 (47.47%), Query Frame = 1 Query: 7 SLIVLLGAVGCI-PVGEPPINQEVVAMRNKVVSLESNLNNKTNQ-------QLAVTDARTQQIELDLNQIKGRLDTLEVAMRTGSMPGMVE-----DEFAQATSLPARVKELEA----IVSSLQGGEKAGRGFNSRTSTSQPLQQQTTSKKLRLSDLRQAFIKGKYSFIADNADLVAKGLTSKADQTELTYLQARSYH 549
SL++ L GCI P E + ++ +++ ++V++E + N++ + Q A R +I +++ +IKG +D+L V + TG +PG E T + AR+ +E I++++ + + S ++++ +K D++ AF Y IAD+ + + K + E T++ A SY+
Sbjct: 11 SLLLSLSLTGCITPAEERQLKDDIFSLQTRLVAMEGQVGNQSKEITTQASRQEASVSTRLDKISIEIQRIKGDIDSLRVGVVTGQLPGGAEGTQETSASKSMTDIVARIDAIEENQNRIIAAIDKAIETKKPEKKSESAESKERKESEAKLKTFKDMKTAFDNKNYKLIADHGEKLVGTFKQKKTKQEATFMLAESYY 208 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98446.23949.1 >prot_P-canaliculata_contig98446.23949.1 ID=prot_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=187bp MSSLIVLLGAVGCIPVGEPPINQEVVAMRNKVVSLESNLNNKTNQQLAVTback to top mRNA from alignment at P-canaliculata_contig98446:6..566- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98446.23949.1 ID=mRNA_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at P-canaliculata_contig98446:6..566- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98446:6..566- >mRNA_P-canaliculata_contig98446.23949.1 ID=mRNA_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at P-canaliculata_contig98446:6..566- (Pelvetia canaliculata dioecious)back to top |