mRNA_P-canaliculata_contig98446.23949.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98446.23949.1
Unique NamemRNA_P-canaliculata_contig98446.23949.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Match: A0A4Q6B794_9PROT (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6B794_9PROT)

HSP 1 Score: 61.6 bits (148), Expect = 4.840e-8
Identity = 46/198 (23.23%), Postives = 94/198 (47.47%), Query Frame = 1 
Query:    7 SLIVLLGAVGCI-PVGEPPINQEVVAMRNKVVSLESNLNNKTNQ-------QLAVTDARTQQIELDLNQIKGRLDTLEVAMRTGSMPGMVE-----DEFAQATSLPARVKELEA----IVSSLQGGEKAGRGFNSRTSTSQPLQQQTTSKKLRLSDLRQAFIKGKYSFIADNADLVAKGLTSKADQTELTYLQARSYH 549
            SL++ L   GCI P  E  +  ++ +++ ++V++E  + N++ +       Q A    R  +I +++ +IKG +D+L V + TG +PG  E           T + AR+  +E     I++++    +  +      S     ++++ +K     D++ AF    Y  IAD+ + +      K  + E T++ A SY+
Sbjct:   11 SLLLSLSLTGCITPAEERQLKDDIFSLQTRLVAMEGQVGNQSKEITTQASRQEASVSTRLDKISIEIQRIKGDIDSLRVGVVTGQLPGGAEGTQETSASKSMTDIVARIDAIEENQNRIIAAIDKAIETKKPEKKSESAESKERKESEAKLKTFKDMKTAFDNKNYKLIADHGEKLVGTFKQKKTKQEATFMLAESYY 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4Q6B794_9PROT4.840e-823.23Tetratricopeptide repeat protein n=1 Tax=Proteobac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98446contigP-canaliculata_contig98446:6..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size561
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.7117908-CDS-P-canaliculata_contig98446:5..5661622817345.7117908-CDS-P-canaliculata_contig98446:5..566Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98446 6..566 -
1693495237.0280194-CDS-P-canaliculata_contig98446:5..5661693495237.0280194-CDS-P-canaliculata_contig98446:5..566Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98446 6..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98446.23949.1prot_P-canaliculata_contig98446.23949.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98446 6..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98446.23949.1

>prot_P-canaliculata_contig98446.23949.1 ID=prot_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=187bp
MSSLIVLLGAVGCIPVGEPPINQEVVAMRNKVVSLESNLNNKTNQQLAVT
DARTQQIELDLNQIKGRLDTLEVAMRTGSMPGMVEDEFAQATSLPARVKE
LEAIVSSLQGGEKAGRGFNSRTSTSQPLQQQTTSKKLRLSDLRQAFIKGK
YSFIADNADLVAKGLTSKADQTELTYLQARSYHFMNR
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mRNA from alignment at P-canaliculata_contig98446:6..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98446.23949.1 ID=mRNA_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at P-canaliculata_contig98446:6..566- (Pelvetia canaliculata dioecious)
ATGAGTAGCTTGATCGTGTTGCTCGGTGCCGTGGGGTGTATTCCCGTTGG
CGAGCCACCTATCAACCAAGAAGTCGTTGCAATGAGAAACAAGGTCGTTT
CATTAGAAAGCAACCTCAATAATAAGACCAATCAGCAGCTAGCCGTAACG
GATGCAAGAACTCAGCAGATTGAGCTAGATCTAAACCAGATTAAGGGTCG
TTTGGACACTTTAGAGGTGGCCATGAGGACGGGTTCTATGCCTGGAATGG
TTGAGGATGAATTTGCTCAGGCCACGAGTCTACCGGCGAGGGTTAAAGAG
CTAGAGGCTATTGTAAGCTCTCTTCAAGGTGGTGAGAAGGCCGGGCGAGG
TTTCAATAGCCGAACATCCACCAGTCAACCTCTACAGCAACAGACGACGA
GTAAAAAGCTAAGGCTGAGCGATTTGAGGCAAGCGTTTATTAAAGGCAAG
TACTCCTTTATTGCGGACAATGCAGACTTAGTAGCAAAGGGTCTGACCTC
CAAGGCTGATCAGACTGAACTTACTTACTTACAAGCTCGCAGTTATCACT
TTATGAATAGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig98446:6..566-

>mRNA_P-canaliculata_contig98446.23949.1 ID=mRNA_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at P-canaliculata_contig98446:6..566- (Pelvetia canaliculata dioecious)
ATGAGTAGCTTGATCGTGTTGCTCGGTGCCGTGGGGTGTATTCCCGTTGG
CGAGCCACCTATCAACCAAGAAGTCGTTGCAATGAGAAACAAGGTCGTTT
CATTAGAAAGCAACCTCAATAATAAGACCAATCAGCAGCTAGCCGTAACG
GATGCAAGAACTCAGCAGATTGAGCTAGATCTAAACCAGATTAAGGGTCG
TTTGGACACTTTAGAGGTGGCCATGAGGACGGGTTCTATGCCTGGAATGG
TTGAGGATGAATTTGCTCAGGCCACGAGTCTACCGGCGAGGGTTAAAGAG
CTAGAGGCTATTGTAAGCTCTCTTCAAGGTGGTGAGAAGGCCGGGCGAGG
TTTCAATAGCCGAACATCCACCAGTCAACCTCTACAGCAACAGACGACGA
GTAAAAAGCTAAGGCTGAGCGATTTGAGGCAAGCGTTTATTAAAGGCAAG
TACTCCTTTATTGCGGACAATGCAGACTTAGTAGCAAAGGGTCTGACCTC
CAAGGCTGATCAGACTGAACTTACTTACTTACAAGCTCGCAGTTATCACT
TTATGAATAGGATGAGTAGCTTGATCGTGTTGCTCGGTGCCGTGGGGTGT
ATTCCCGTTGGCGAGCCACCTATCAACCAAGAAGTCGTTGCAATGAGAAA
CAAGGTCGTTTCATTAGAAAGCAACCTCAATAATAAGACCAATCAGCAGC
TAGCCGTAACGGATGCAAGAACTCAGCAGATTGAGCTAGATCTAAACCAG
ATTAAGGGTCGTTTGGACACTTTAGAGGTGGCCATGAGGACGGGTTCTAT
GCCTGGAATGGTTGAGGATGAATTTGCTCAGGCCACGAGTCTACCGGCGA
GGGTTAAAGAGCTAGAGGCTATTGTAAGCTCTCTTCAAGGTGGTGAGAAG
GCCGGGCGAGGTTTCAATAGCCGAACATCCACCAGTCAACCTCTACAGCA
ACAGACGACGAGTAAAAAGCTAAGGCTGAGCGATTTGAGGCAAGCGTTTA
TTAAAGGCAAGTACTCCTTTATTGCGGACAATGCAGACTTAGTAGCAAAG
GGTCTGACCTCCAAGGCTGATCAGACTGAACTTACTTACTTACAAGCTCG
CAGTTATCACTTTATGAATAGG
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