prot_P-canaliculata_contig98446.23949.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig98446.23949.1
Unique Name	prot_P-canaliculata_contig98446.23949.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	187

Homology

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BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Match: A0A4Q6B794_9PROT (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6B794_9PROT)

HSP 1 Score: 61.6 bits (148), Expect = 4.840e-8
Identity = 46/198 (23.23%), Postives = 94/198 (47.47%), Query Frame = 0

Query:    3 SLIVLLGAVGCI-PVGEPPINQEVVAMRNKVVSLESNLNNKTNQ-------QLAVTDARTQQIELDLNQIKGRLDTLEVAMRTGSMPGMVE-----DEFAQATSLPARVKELEA----IVSSLQGGEKAGRGFNSRTSTSQPLQQQTTSKKLRLSDLRQAFIKGKYSFIADNADLVAKGLTSKADQTELTYLQARSYH 183
            SL++ L   GCI P  E  +  ++ +++ ++V++E  + N++ +       Q A    R  +I +++ +IKG +D+L V + TG +PG  E           T + AR+  +E     I++++    +  +      S     ++++ +K     D++ AF    Y  IAD+ + +      K  + E T++ A SY+
Sbjct:   11 SLLLSLSLTGCITPAEERQLKDDIFSLQTRLVAMEGQVGNQSKEITTQASRQEASVSTRLDKISIEIQRIKGDIDSLRVGVVTGQLPGGAEGTQETSASKSMTDIVARIDAIEENQNRIIAAIDKAIETKKPEKKSESAESKERKESEAKLKTFKDMKTAFDNKNYKLIADHGEKLVGTFKQKKTKQEATFMLAESYY 208

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig98446.23949.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A4Q6B794_9PROT	4.840e-8	23.23	Tetratricopeptide repeat protein n=1 Tax=Proteobac...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..45
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..187
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..13 score: 0.539

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig98446	contig	P-canaliculata_contig98446:6..566 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig98446.23949.1	mRNA_P-canaliculata_contig98446.23949.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig98446 6..566 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig98446.23949.1 ID=prot_P-canaliculata_contig98446.23949.1|Name=mRNA_P-canaliculata_contig98446.23949.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=187bp
MSSLIVLLGAVGCIPVGEPPINQEVVAMRNKVVSLESNLNNKTNQQLAVT
DARTQQIELDLNQIKGRLDTLEVAMRTGSMPGMVEDEFAQATSLPARVKE
LEAIVSSLQGGEKAGRGFNSRTSTSQPLQQQTTSKKLRLSDLRQAFIKGK
YSFIADNADLVAKGLTSKADQTELTYLQARSYHFMNR