mRNA_P-canaliculata_contig98128.23912.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98128.23912.1
Unique NamemRNA_P-canaliculata_contig98128.23912.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Match: UPI0007EC79E1 (hypothetical protein n=2 Tax=Tenacibaculum ovolyticum TaxID=104270 RepID=UPI0007EC79E1)

HSP 1 Score: 58.2 bits (139), Expect = 9.170e-7
Identity = 51/173 (29.48%), Postives = 81/173 (46.82%), Query Frame = 1 
Query:   40 WHYSDFLVEKYKSPVHELVKEEKER--RRYKVDNKGSILFVKGVKK---DYDILINDKGKEFKVYDLNVLENIINKDFLIKYYIDSETKDIGSEKIKIQYFELFKLSFQER---KKLYEFIAESVSVEISFSNWDVNKTFISTTHQDNQDNSISYLKRIYKIKNLNHHVHSHP 534
            WH +    E YKSPV    K+EK +  R+Y+++  G I   +G  K   DYDIL+N KG+E ++YD N+L  +             +TK + S K+      + K+S + +    K++ F  ++ S E  F     NK  + T   D  +NS    +       +   +HSHP
Sbjct:  132 WHITSIEEEGYKSPVQAAEKKEKNKNLRKYQINQTGHITLCEGKIKNVGDYDILMNLKGEEIRIYDTNILPQL------------EKTKIVESYKVS-----MVKVSVKSKYDLAKVFLFSVDNSSPEWRFIRTTKNKYILGTHFSD--ENSPGNSELGITSSKIFSDIHSHP 285
[Close]
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Match: UPI00095098F8 (hypothetical protein n=1 Tax=Cellulophaga lytica TaxID=979 RepID=UPI00095098F8)

HSP 1 Score: 55.5 bits (132), Expect = 8.170e-6
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    4 QRINKTALNVYRWHYSDFLVEKYKSPVHELVKEEKERRRYK----VDNKGSILFVKGVKKDYDILINDKGKEFKVYDLNVLENIINK 252
            QRINK  LNV+RWHYSD+ +E+Y+SPV+ +V+E KE+   K      N+G  +   G    Y  L+        + D ++L++ I K
Sbjct:  135 QRINKKVLNVFRWHYSDYDLEEYQSPVNTVVEETKEKLHLKDGFYFSNQGEFIGRMGNNHKYSNLVFVFSDNLTISDKSLLKSEIKK 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98128.23912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0007EC79E19.170e-729.48hypothetical protein n=2 Tax=Tenacibaculum ovolyti... [more]
UPI00095098F88.170e-637.93hypothetical protein n=1 Tax=Cellulophaga lytica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98128contigP-canaliculata_contig98128:16..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.2521915-CDS-P-canaliculata_contig98128:15..5521622817343.2521915-CDS-P-canaliculata_contig98128:15..552Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98128 16..552 +
1693495235.5849116-CDS-P-canaliculata_contig98128:15..5521693495235.5849116-CDS-P-canaliculata_contig98128:15..552Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98128 16..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98128.23912.1prot_P-canaliculata_contig98128.23912.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98128 16..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98128.23912.1

>prot_P-canaliculata_contig98128.23912.1 ID=prot_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp
FQRINKTALNVYRWHYSDFLVEKYKSPVHELVKEEKERRRYKVDNKGSIL
FVKGVKKDYDILINDKGKEFKVYDLNVLENIINKDFLIKYYIDSETKDIG
SEKIKIQYFELFKLSFQERKKLYEFIAESVSVEISFSNWDVNKTFISTTH
QDNQDNSISYLKRIYKIKNLNHHVHSHPK
back to top

mRNA from alignment at P-canaliculata_contig98128:16..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98128.23912.1 ID=mRNA_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at P-canaliculata_contig98128:16..552+ (Pelvetia canaliculata dioecious)
TTTCAACGCATTAACAAAACCGCTTTAAATGTTTATAGATGGCATTATTC
AGATTTTCTTGTTGAAAAATATAAATCACCTGTGCATGAATTGGTAAAGG
AAGAGAAAGAAAGGAGACGTTATAAAGTTGACAACAAAGGCTCTATTTTA
TTTGTTAAAGGAGTAAAAAAAGATTACGATATTCTTATTAATGATAAAGG
AAAAGAATTTAAAGTTTACGATTTAAATGTTCTTGAAAATATAATAAATA
AAGATTTTTTAATTAAATATTATATTGATTCTGAAACTAAAGATATTGGT
TCTGAGAAAATTAAAATTCAATACTTTGAACTTTTTAAACTTTCATTTCA
AGAAAGGAAGAAACTTTATGAATTTATTGCGGAAAGTGTGTCCGTTGAAA
TTTCATTTTCCAATTGGGATGTAAATAAAACATTTATCAGCACAACACAT
CAAGATAATCAAGACAATAGCATTAGTTATTTAAAACGTATTTATAAAAT
TAAAAATTTAAATCACCATGTACATTCACATCCTAAA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig98128:16..552+

>mRNA_P-canaliculata_contig98128.23912.1 ID=mRNA_P-canaliculata_contig98128.23912.1|Name=mRNA_P-canaliculata_contig98128.23912.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at P-canaliculata_contig98128:16..552+ (Pelvetia canaliculata dioecious)
TTTCAACGCATTAACAAAACCGCTTTAAATGTTTATAGATGGCATTATTC
AGATTTTCTTGTTGAAAAATATAAATCACCTGTGCATGAATTGGTAAAGG
AAGAGAAAGAAAGGAGACGTTATAAAGTTGACAACAAAGGCTCTATTTTA
TTTGTTAAAGGAGTAAAAAAAGATTACGATATTCTTATTAATGATAAAGG
AAAAGAATTTAAAGTTTACGATTTAAATGTTCTTGAAAATATAATAAATA
AAGATTTTTTAATTAAATATTATATTGATTCTGAAACTAAAGATATTGGT
TCTGAGAAAATTAAAATTCAATACTTTGAACTTTTTAAACTTTCATTTCA
AGAAAGGAAGAAACTTTATGAATTTATTGCGGAAAGTGTGTCCGTTGAAA
TTTCATTTTCCAATTGGGATGTAAATAAAACATTTATCAGCACAACACAT
CAAGATAATCAAGACAATAGCATTAGTTATTTAAAACGTATTTATAAAAT
TAAAAATTTAAATCACCATGTACATTCACATCCTAAATTTCAACGCATTA
ACAAAACCGCTTTAAATGTTTATAGATGGCATTATTCAGATTTTCTTGTT
GAAAAATATAAATCACCTGTGCATGAATTGGTAAAGGAAGAGAAAGAAAG
GAGACGTTATAAAGTTGACAACAAAGGCTCTATTTTATTTGTTAAAGGAG
TAAAAAAAGATTACGATATTCTTATTAATGATAAAGGAAAAGAATTTAAA
GTTTACGATTTAAATGTTCTTGAAAATATAATAAATAAAGATTTTTTAAT
TAAATATTATATTGATTCTGAAACTAAAGATATTGGTTCTGAGAAAATTA
AAATTCAATACTTTGAACTTTTTAAACTTTCATTTCAAGAAAGGAAGAAA
CTTTATGAATTTATTGCGGAAAGTGTGTCCGTTGAAATTTCATTTTCCAA
TTGGGATGTAAATAAAACATTTATCAGCACAACACATCAAGATAATCAAG
ACAATAGCATTAGTTATTTAAAACGTATTTATAAAATTAAAAATTTAAAT
CACCATGTACATTCACATCCTAAA
back to top