mRNA_P-canaliculata_contig981.23908.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig981.23908.1
Unique NamemRNA_P-canaliculata_contig981.23908.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig981.23908.1 vs. uniprot
Match: A0A6H5JWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.030e-10
Identity = 80/301 (26.58%), Postives = 120/301 (39.87%), Query Frame = 3 
Query:  378 QTIVRGALQLLVSDSPPRTLVLHCKAANASTLNPCP--DSWITETGPDGGHLGDPFCGKHLHRRKRAVVVKHFEELQ--------QPSPWKFGGLKDIDGT---------WSKRASQRRAEPSIRS----------------FGGRIALSRGHS*YT*CGRAGMSIYPPGARTLRDPVNHLSAYNASDKWLLGSIVLLFLRPFFANTTTMMSNLIQEKMKQLRERLRIIS*SLRRELLGFLQASSKMTFAIRAHVCDTREAACLTSYAEVLVDRARRVLGRPGVRLVVHTLFHLEQMVSNY 1175
            +  +RG     VSDSP R ++L+CK  N ST  PCP   +   E  P  G LG+       +RR        + ELQ        Q       G+    G          W K          + S                F G    S   S ++   + G ++YPP    L+D   + S+   SDKWLLGSI+LL  R    + T +   +   +++ L++       ++  +L   LQ +S +TFA+R+      E   L  +A   V     +LGR GVR  VH+  H  Q +  +
Sbjct:  250 EIFLRGGPLTWVSDSPQRAILLYCKHPNNSTKLPCPYCKADQEERLPTCGDLGNARYDVEANRRTWGEAQDGWRELQALDLAPNEQTKRSAELGIMAPTGVSGGVLGRPLWDKVFINPARHVPVESLHADALTAGAGVGAGFFSGPPERSWPGSEFSILWQ-GSTLYPPATAPLKDICTNYSSLKGSDKWLLGSILLLVSRCVLHDATALKEYVKPRELQALKDTWGGEQ-AVLAQLRKLLQVASALTFAVRSPSFYKAERKKLMEHARDTVGVYAELLGRGGVRTTVHSALHYVQAIEEH 548
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig981.23908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWQ6_9PHAE1.030e-1026.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig981contigP-canaliculata_contig981:12941..17714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2763
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig981.23908.1prot_P-canaliculata_contig981.23908.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig981 14963..16173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.990432-UTR-P-canaliculata_contig981:12940..136991622817342.990432-UTR-P-canaliculata_contig981:12940..13699Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 12941..13699 +
1693495235.3844223-UTR-P-canaliculata_contig981:12940..136991693495235.3844223-UTR-P-canaliculata_contig981:12940..13699Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 12941..13699 +
1622817343.0027316-UTR-P-canaliculata_contig981:14477..146201622817343.0027316-UTR-P-canaliculata_contig981:14477..14620Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 14478..14620 +
1693495235.3960857-UTR-P-canaliculata_contig981:14477..146201693495235.3960857-UTR-P-canaliculata_contig981:14477..14620Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 14478..14620 +
1622817343.0147278-UTR-P-canaliculata_contig981:14854..149621622817343.0147278-UTR-P-canaliculata_contig981:14854..14962Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 14855..14962 +
1693495235.4050405-UTR-P-canaliculata_contig981:14854..149621693495235.4050405-UTR-P-canaliculata_contig981:14854..14962Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 14855..14962 +
1622817343.0672228-UTR-P-canaliculata_contig981:16173..171171622817343.0672228-UTR-P-canaliculata_contig981:16173..17117Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 16174..17117 +
1693495235.451259-UTR-P-canaliculata_contig981:16173..171171693495235.451259-UTR-P-canaliculata_contig981:16173..17117Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 16174..17117 +
1622817343.0799353-UTR-P-canaliculata_contig981:17337..177141622817343.0799353-UTR-P-canaliculata_contig981:17337..17714Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 17338..17714 +
1693495235.4622173-UTR-P-canaliculata_contig981:17337..177141693495235.4622173-UTR-P-canaliculata_contig981:17337..17714Pelvetia canaliculata dioeciousUTRP-canaliculata_contig981 17338..17714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.0282493-CDS-P-canaliculata_contig981:14962..150371622817343.0282493-CDS-P-canaliculata_contig981:14962..15037Pelvetia canaliculata dioeciousCDSP-canaliculata_contig981 14963..15037 +
1693495235.4166448-CDS-P-canaliculata_contig981:14962..150371693495235.4166448-CDS-P-canaliculata_contig981:14962..15037Pelvetia canaliculata dioeciousCDSP-canaliculata_contig981 14963..15037 +
1622817343.0415874-CDS-P-canaliculata_contig981:15483..155741622817343.0415874-CDS-P-canaliculata_contig981:15483..15574Pelvetia canaliculata dioeciousCDSP-canaliculata_contig981 15484..15574 +
1693495235.4257329-CDS-P-canaliculata_contig981:15483..155741693495235.4257329-CDS-P-canaliculata_contig981:15483..15574Pelvetia canaliculata dioeciousCDSP-canaliculata_contig981 15484..15574 +
1622817343.055003-CDS-P-canaliculata_contig981:15907..161731622817343.055003-CDS-P-canaliculata_contig981:15907..16173Pelvetia canaliculata dioeciousCDSP-canaliculata_contig981 15908..16173 +
1693495235.438868-CDS-P-canaliculata_contig981:15907..161731693495235.438868-CDS-P-canaliculata_contig981:15907..16173Pelvetia canaliculata dioeciousCDSP-canaliculata_contig981 15908..16173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig981.23908.1

>prot_P-canaliculata_contig981.23908.1 ID=prot_P-canaliculata_contig981.23908.1|Name=mRNA_P-canaliculata_contig981.23908.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MTFAIRAHVCDTREAACLTSYAEVLVDRARRVLGRPGVRLVVHTLFHLEQ
MVSNYGVLPNSSIGEAGHQRQKRSNKSRSERFPSEHHMRRTNTFLALEGI
VGGISRPARKWSTKRRMHVWQSVHAGPIALQDSKLRVAHGRVD*
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mRNA from alignment at P-canaliculata_contig981:12941..17714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig981.23908.1 ID=mRNA_P-canaliculata_contig981.23908.1|Name=mRNA_P-canaliculata_contig981.23908.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4774bp|location=Sequence derived from alignment at P-canaliculata_contig981:12941..17714+ (Pelvetia canaliculata dioecious)
AGATGTCTTACTCTGCTGGCGTGGTTGCCGCTTAAGAGAAAAGTTGCTTT
GGGCACGCGCTCTTGCGGTGCGAGGACGGGTCTCTTGCTACTAGGATAGG
GAGGTGTGAAATGTTATTATTCGTTATGGCGTGGTATTGACAGTGAACAA
ATGACGCTTTTTTTCTGATTGCTAGATCGCCACCATTGGGGGGCAGGAAA
CCTATACACAAAACGAGGGCATATCCATATGAAATTAAGACTTCAACGTT
TCAGGCGAGATCGAGATTCTTCTCAATGCGTTAGACCCTTTTATTTTAAG
CTACATTTTTCCCATACGTGTTCCTATGACTTATCGACGGCTTTGCCCTC
GACGCGTCTTTCCTATGCTATGCATTTCAGACCATTGTGAGGGGCGCCCT
GCAACTTTTGGTAAGTGATTCCCCGCCACGGACCCTTGTGCTTCACTGCA
AAGCCGCAAACGCTTCCACGCTGAACCCTTGTCCAGATTCTTGGATAACC
GAGACAGGCCCAGATGGGGGGCACCTTGGTGATCCCTTCTGCGGCAAGCA
CCTCCACCGCCGCAAGCGAGCGGTGGTTGTGAAACACTTCGAAGAACTCC
AGCAGCCTTCCCCCTGGAAGTTCGGTGGCCTCAAGGATATCGACGGAACT
TGGAGTAAACGCGCCTCGCAACGACGCGCCGAGCCCTCTATACGAAGCTT
TGGCGGTCGGATAGCCTTGTCGCGTGGCCACAGCTGATATACTTGATGTG
GACGGGCAGGTGCGCAAGTTGTAGCGACCAGCCTGCGAAAGTGACCCCAT
TGTTTTGCATCAATCTAAGCTATGTGATGAATACATTGGTTGTAACTGTT
GCACGTAGGTGTTGTGTGCATGTTTTGAATCGTAGAAGAGTTTATCCTTG
GAGACGAAGGTACCATTATTACCCTTATTTGCGGAGCCATGTTGTGGAGC
GCTGTAGGTTCGTGGCACGCTACAGCAGGGGAAAAATAGCCTCAATCACA
GGCGCGGCGACGATGTTTGGCGCTTTGGAATGGCGTTGTGAAACATGGTG
TCTCGTGGATACAATTTAACATGATGTATTCTTGTATTGCAACCCCTTTA
CAACGACTCGCGATAGATGAAGACGAGATTCGTAGTCGTCTACGCCGGAC
CCAGGCTGACCCCACGGGCGATCACACAACCTCAGGGTTCTAGTATACAT
TCGAAAGCAGAAATATGTCCCCCCAACCATCGTGAGATCGTGCAATACGC
TCCCTCCTCCTAACAACCTTCACTTACGGCCGCGTGTGCAACTCCTCACC
CAGCGTAGAAGCTGCCAGGGGGGATGCTTCGATTTTTTTAGATGGTCATA
TCCTTAGGGAACCACTATTACTCGCATTATGAACGTAGAGTATCACATGT
AGAGCTCGATCTCTACTGAAGTCCTTATGGGACGGAACTGTCATGCGCCC
AGGGCCAGCAAGGGCTGACACTGGGTTTTTTCTTCGTTGAAATTCTGAAG
TATAATGGACGTGAAAGGGTTGCCTGCGTCATGGCAGGAATGTCGATCTA
CCCACCTGGAGCGCGGACGCTCAGGGATCCAGTGAACCACCTCAGTGCAT
ACAATGCCTCCGACAAGTGGCTTCTCGGGTCCATCGTACTGCTTTTTCTC
CGACCCTTCTTCGCAAACACGACAACCATGGTACGCCTCGACGGATGCGA
GGGAGGCGTCTATTAATCGCGATGTGTAAGATGTCATCCATTACGTTTTC
TACAAACACAATCACGTAGCTACACCCGTCTTCAACATCCTAAAACAAAT
CACGCGACCAAGTCAAAATTGCCCATATCATTATATTTCCCTGAAGCTTT
TTTCGGCTTCTTCTGTAGTTCCATTCTACAATTGGCACACCCTCGCGTGA
TCGACCCCGCGCAGATGAGTAACCTCATTCAAGAAAAAATGAAGCAGTTA
AGGGAGCGGCTTCGGATCATCAGCTAAAGCCTTCGACGAGAGCTTTTAGG
TTTCCTGCAGGCCTCCTCGAAGATGACGTTCGCGATCCGGGCACACGTCT
GTGATACTCGAGAGGCGGCCTGTCTCACCTCTTACGCGGAAGTCCTGGTG
AGGGCTGTTGTTTGATCTATGGCACAATAAATATTTCGTAGTGTGCAGGA
CCATTGTTCCGGATCGGTTGTCGTCCGATTTAGATTTATCTCGAGTTGTT
TACAAGGACGGAGTCGTATCGGTGTGACGAAGTTCTTTTGGTGTGGAGAC
ATTGTCGTATGCTTAGTATACTCGAATATATCAGAGTATAGTGTTTCCGT
ATGTTGTGTTTTGAAGCGTAGTGGATCAGAGTTCAATATAAGTAGAGTTT
CTAAAATCTCGACAGAGTAGTACGGCATACGAAATATTATACTTTATGTG
TACAGTAGCTTGTGGTACACACGTACCCCACAGTAAAGTGCTGCTTCAAC
CCCTCGGCAATAGAGTACAGTACAAGGTTTGGAGACTGCCGTTCACTCTA
GACCTTTTTTAACCTTGAAATTTGCCCCGCGCGGGTAATGCAGGTTGATC
GCGCTCGACGTGTCCTTGGGCGACCAGGTGTAAGGCTGGTGGTACATACG
CTTTTTCACCTGGAGCAGATGGTGAGCAATTATGGTGAGCTGCTAGCCCC
AATCTTCGTCAAGGAGCTTTCCGCGTGGGTCTACGATCGGGAGTGCTGTA
GACCGCTCTGTTACCAAATGTACGTGTTCTGCTTCGGCCACCGTAAAGCC
TGGGGGCACAAACGGATGGCTGCTCTTTCAACTAGGCGATCTTATGGTAC
GACGTCAAATCTTGTGTATGGTCTATGAAGTTCCGCGGACAGATAAATAA
TGGCGACAGTCGTAGATAAAAGAACAATTCGAAAAGCGCGCGGTAAATCG
TGTCCATGGCAACATGGTACCAGAGGTTATAAGCATCATGTACTTTGCCT
GTTGTCGTCCCTTCAAGGTGTTCTCCCAAACTCGAGCATCGGGGAGGCGG
GACATCAACGTCAAAAGCGTTCCAATAAGTCCAGATCAGAACGATTTCCC
TCCGAGCATCACATGCGTAGGACCAACACCTTCCTTGCGCTGGAAGGGAT
CGTGGGTGGGATATCACGGCCCGCCCGGAAATGGTCGACAAAGCGGCGCA
TGCACGTCTGGCAAAGTGTGCACGCTGGACCAATTGCGTTGCAGGACTCA
AAGCTCCGTGTAGCACATGGGCGGGTGGATTAGATGCACACACCGACCCC
TACGAGCAGAAAACAATCGGGGCCAAGTAAAAAGCGAGGAGACAGACGAG
TGGAAACGCAACGTGACAGGCAACCCTGTGAACGGCAGAAGACAAAGCGT
ACCAAGGTGGGGGTCTGGATGCGCGCAAAGAGTGGGCAGACGCTCTTAGA
CGCACGCACATGCGACCCGACAGCTCCCAGATGATTCAAGCAATGTGCTC
GTGGTACGGCTGCCAACCGCAAAGAGGGGTCGAAGACTTGGGCAGTGATT
CGTGGTGCCCTAAATGCTGGTACGGTGGGCGAGACCTCCTTATGCACAAT
GAAATACACTGCTCAAGAATGGCATGGGGAATGTCGGGAATCTCCAGCAG
CGGTCTCGGGCGGCTTCAAGGAGGGAACGCAAGGGCTACTGGAGAGGGTG
GGCCCGCACATGGGTGGCTCTGGGTGAGAGCGCTGGTGAAGACGTCAAGA
TCTTCAAAAACCCACGCGCACTCGAAGATCACGGGCTTCGCCCACGGTGT
ACGGTGGGCTCGCAAATTTTAACCATGGCCAAAATACTGTACTTTTTTGT
GCACGAAGGCAACCCCTCTTCTACCAATCCAAACGGGGAAAATGCCGGAG
ACAAAACGATTTGGGCGGCCTTCTACGAGTACAAGTCGGCTGGAAGGGGG
AAAACAGGTTGCCGGCCGCTACAACGGAACACCCAACGTTCACTCTGAGC
GGGAAGGGGAGGCCTTCTATTTGCCCTGCCGACGCCATCCGGCGACATGT
CCACATGGGGCATGCCTGTCCGGATAGTACTGGAAACTGTACGTGGCAGT
GTGGGCCATACTCCTCTGTGACAGGGGTCCGGGTTTGGAGTCATAAGTAC
AGGAACGCAAGTGGGAATAGACCCGACAGGTTCATCCTCAACGAACGTCA
CCACAGCCTCGCTCTGACTCTTTTTAGGTGGGTGTTGACGGAAAGCGACA
CCTGACACTTATTTCTATACGCGACTGATGCATTGCGAGGGACCGTTCAT
GACAGAATAACCATGTTTAGGAGGAGTTCGTCACGTTGTTGCGCGTCACA
CTAAAAGTCTTTCCATCACCCGCATCCCTCGCGCGATTGCCTACTGCGTA
TCCCCCCGCCTCAACATCCTCCTCATAATCGCCGGATCAACGAGGAGACG
GCGGATGGCGACTATTTTTAAGAAATAAGTGCTGAGCCTCTATGAACATA
CCAGCGGGGGCTAGGCAGGGGGTAGGCAGAGGGGAGACTGTACGAGTTGT
GATTGAAAAACGGTCGGGGGACACTGTTATCGGTGGATACCGCTGTGGTG
AAAAACCTTGAAGCAATCAATGTTCTCGCGTCGTCTACAAGGGCAACGAG
ATAAGCTTGTAGCGAAGCTCGGACGACAGAATGGCGCGCTGCCACCTCCG
TACTGCTCCTGGTTGGGATGAGCAATAGTAGACAATGTATTGAAGGGGAC
CCGGTTAGCAAATTTTAGACGCTTTTAATCCTTACAATATTGGAATATTT
CAGGTGACCAGCGAAATAGCCGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig981:12941..17714+

>mRNA_P-canaliculata_contig981.23908.1 ID=mRNA_P-canaliculata_contig981.23908.1|Name=mRNA_P-canaliculata_contig981.23908.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig981:12941..17714+ (Pelvetia canaliculata dioecious)
ATGACGTTCGCGATCCGGGCACACGTCTGTGATACTCGAGAGGCGGCCTG
TCTCACCTCTTACGCGGAAGTCCTGATGACGTTCGCGATCCGGGCACACG
TCTGTGATACTCGAGAGGCGGCCTGTCTCACCTCTTACGCGGAAGTCCTG
GTTGATCGCGCTCGACGTGTCCTTGGGCGACCAGGTGTAAGGCTGGTGGT
ACATACGCTTTTTCACCTGGAGCAGATGGTGAGCAATTATGGTTGATCGC
GCTCGACGTGTCCTTGGGCGACCAGGTGTAAGGCTGGTGGTACATACGCT
TTTTCACCTGGAGCAGATGGTGAGCAATTATGGTGTTCTCCCAAACTCGA
GCATCGGGGAGGCGGGACATCAACGTCAAAAGCGTTCCAATAAGTCCAGA
TCAGAACGATTTCCCTCCGAGCATCACATGCGTAGGACCAACACCTTCCT
TGCGCTGGAAGGGATCGTGGGTGGGATATCACGGCCCGCCCGGAAATGGT
CGACAAAGCGGCGCATGCACGTCTGGCAAAGTGTGCACGCTGGACCAATT
GCGTTGCAGGACTCAAAGCTCCGTGTAGCACATGGGCGGGTGGATTAGGT
GTTCTCCCAAACTCGAGCATCGGGGAGGCGGGACATCAACGTCAAAAGCG
TTCCAATAAGTCCAGATCAGAACGATTTCCCTCCGAGCATCACATGCGTA
GGACCAACACCTTCCTTGCGCTGGAAGGGATCGTGGGTGGGATATCACGG
CCCGCCCGGAAATGGTCGACAAAGCGGCGCATGCACGTCTGGCAAAGTGT
GCACGCTGGACCAATTGCGTTGCAGGACTCAAAGCTCCGTGTAGCACATG
GGCGGGTGGATTAG
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