mRNA_P-canaliculata_contig9806.23903.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9806.23903.1
Unique NamemRNA_P-canaliculata_contig9806.23903.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9806.23903.1 vs. uniprot
Match: D7G778_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G778_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 5.360e-101
Identity = 163/267 (61.05%), Postives = 207/267 (77.53%), Query Frame = 1 
Query:    7 GVYDHPVNEQVTGKASYLFNKDRVIPASMGAATVTDTKFGTLTSTVSVDPQERSASVDATLYTEDYGTFSTSLKAKDKVKDKVDFLGPVRWTSKPLNFPFALKEPTPMVIGIVHDVKTKEGQLNFSAKLSNNFDGKVVLPSTGDPIATVIASHSPDKDSDIRASANVLDLLGSGVGKGSIGVSYRRDLDTVQVSDESLSRYPPSTVRQGSSSRVTLEGKDTGDFAWSLSNTTKRMTLVLSGRGRLRLRGEEEGISSTVALRSSFRVF 807
            G YD  +++ V+GKASY+FNKDRV+PA + A++ TDT +G    TV+VDPQ+++A V+ ++  E+ G FST+LKA +K   +   LGP++WTS P++FPFAL+E TPMVI I HD+ TKEG L+ +AKL++NFDGK++LPS GDP+AT++ SHSPDK SDIRASANVLDL+GSG GKG+IGV+YRRDLD V                 GSSSRVTLEGKDTGDFAWSLSNT+KRMTLVLSGRGR+  RGE  G+ STV+LR SFR+F
Sbjct:   50 GNYDGQLSKGVSGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQDKTAVVEGSIRNEELGMFSTTLKASEK---EGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVA----------------GSSSRVTLEGKDTGDFAWSLSNTSKRMTLVLSGRGRVARRGEGTGVGSTVSLRQSFRMF 297
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9806.23903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G778_ECTSI5.360e-10161.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9806contigP-canaliculata_contig9806:6568..10136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1650
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9806.23903.1prot_P-canaliculata_contig9806.23903.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9806 7408..10046 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.556236-UTR-P-canaliculata_contig9806:6567..74071622817342.556236-UTR-P-canaliculata_contig9806:6567..7407Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9806 6568..7407 -
1693495235.070569-UTR-P-canaliculata_contig9806:6567..74071693495235.070569-UTR-P-canaliculata_contig9806:6567..7407Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9806 6568..7407 -
1622817342.6438878-UTR-P-canaliculata_contig9806:10046..101361622817342.6438878-UTR-P-canaliculata_contig9806:10046..10136Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9806 10047..10136 -
1693495235.1605923-UTR-P-canaliculata_contig9806:10046..101361693495235.1605923-UTR-P-canaliculata_contig9806:10046..10136Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9806 10047..10136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.5687935-CDS-P-canaliculata_contig9806:7407..75871622817342.5687935-CDS-P-canaliculata_contig9806:7407..7587Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 7408..7587 -
1693495235.083269-CDS-P-canaliculata_contig9806:7407..75871693495235.083269-CDS-P-canaliculata_contig9806:7407..7587Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 7408..7587 -
1622817342.5810146-CDS-P-canaliculata_contig9806:7715..77431622817342.5810146-CDS-P-canaliculata_contig9806:7715..7743Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 7716..7743 -
1693495235.094664-CDS-P-canaliculata_contig9806:7715..77431693495235.094664-CDS-P-canaliculata_contig9806:7715..7743Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 7716..7743 -
1622817342.5917075-CDS-P-canaliculata_contig9806:8060..81951622817342.5917075-CDS-P-canaliculata_contig9806:8060..8195Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 8061..8195 -
1693495235.1061735-CDS-P-canaliculata_contig9806:8060..81951693495235.1061735-CDS-P-canaliculata_contig9806:8060..8195Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 8061..8195 -
1622817342.6025875-CDS-P-canaliculata_contig9806:8457..86721622817342.6025875-CDS-P-canaliculata_contig9806:8457..8672Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 8458..8672 -
1693495235.1243503-CDS-P-canaliculata_contig9806:8457..86721693495235.1243503-CDS-P-canaliculata_contig9806:8457..8672Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 8458..8672 -
1622817342.6170435-CDS-P-canaliculata_contig9806:8967..90601622817342.6170435-CDS-P-canaliculata_contig9806:8967..9060Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 8968..9060 -
1693495235.1395836-CDS-P-canaliculata_contig9806:8967..90601693495235.1395836-CDS-P-canaliculata_contig9806:8967..9060Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 8968..9060 -
1622817342.630918-CDS-P-canaliculata_contig9806:9977..100461622817342.630918-CDS-P-canaliculata_contig9806:9977..10046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 9978..10046 -
1693495235.1511006-CDS-P-canaliculata_contig9806:9977..100461693495235.1511006-CDS-P-canaliculata_contig9806:9977..10046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9806 9978..10046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9806.23903.1

>prot_P-canaliculata_contig9806.23903.1 ID=prot_P-canaliculata_contig9806.23903.1|Name=mRNA_P-canaliculata_contig9806.23903.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp
MGAATVTDTKFGTLTSTVSVDPQERSASVDATLYTEDYGTFSTSLKAKDK
VKDKVDFLGPVRWTSKPLNFPFALKEPTPMVIGIVHDVKTKEGQLNFSAK
LSNNFDGKVVLPSTGDPIATVIASHSPDKDSDIRASANVLDLLGSGVGKG
SIGVSYRRDLDTVQVSDESLSRYPPSTVRQGSSSRVTLEGKDTGDFAWSL
SNTTKRMTLVLSGRGRLRLRGEEEGISSTVALRSSFRVF*
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mRNA from alignment at P-canaliculata_contig9806:6568..10136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9806.23903.1 ID=mRNA_P-canaliculata_contig9806.23903.1|Name=mRNA_P-canaliculata_contig9806.23903.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3569bp|location=Sequence derived from alignment at P-canaliculata_contig9806:6568..10136- (Pelvetia canaliculata dioecious)
GTAATAGGAGTCTATGACCACCCGGTCAACGAGCAGGTCACCGGAAAGGC
CTCGTACTTGTTCAACAAGGACCGAGTCATCCCCGCTTCGATGGGTGCGG
CCACCGTCACCGACACCAAGTTCGGAACGCTCACGAGCACGGTTTCCGTT
GACCCACAGGTAAAAACAATGTACGAGAGGGCTCCGCGCGGGCGAGCCGT
TCGCTGCCTTGTAGTGCACAGTATCTGGTACAGCATTCTTGTGCAGTATC
TGTGTCAAATCGCGTGAGTCAGTAGTGCGGAATTCGTGAGGGGCACCAGA
GCAGTTAAACCTCGCACAAGCCAAGCCATTGAACCCATTGGGAGTCCGCA
GGCTAAAATCGGGCTTCGTTTAGGTTCAAGATTAAGAAGCTTAGGGTTAG
GGTTGGGTCGGATCCACAATAGCCGAGAAGGGAAGAAAATAATATCGCAC
ATGTGCCACACGAAAACGTAAATTGGACTCTCTCTCTCTCTCGCTCGAGA
AAAAAGCAAGACTTTCACAATTAATTGCCATCTGACTTCCTTGTGCACAC
CAGGTGTGCGCGTAGGAATCCCCGACGCGGCAAGGAGTTGCAGTCGTGGA
AGCGTTCACCCCACTATTAATAGATGTTGACGATATCGATATTGTAACTC
ACATACATCGTCATGCGTGGCGCGAGCTCTCGAAATTCTGGTCCAGCCCT
TAGATCTGACAAGTGATAAGACGGCCGTGTTGATTGGGGCGTGTGGGTTT
GAAAAGACATGATGCGCCAACCTTAGCTTGCGCCTTTCTGTTTGTTGAGC
TACCAAAGCGTCAAATCGCTGACGTGTATTGTTTGTAACAAGATAGAGTC
ATCTGTATATAGTCTACCGGCGAGAGCTTAAGGGACAGAAAGGGCTATGC
GGCTGCATCCTGAGTTCTTGTAGCCCCTCACTTCGATACCATATTTCCAC
CCCAAACACATTCTGTTCCGTCGCGCGTAACGTCCCCTCCCCTGTTTCGT
ATCCTGGGCTTCGTTTCCCCTTGCACCCTGTATGCATTGCCTGGTATACA
ATAAATCATATTGATATCTATTGCAGGAGAGGAGCGCTAGCGTGGATGCG
ACTCTATACACCGAGGACTACGGGACGTTCTCTACCTCGTTGAAAGCAAA
GGACAAGGTAAAGGACAAGGTGATGGTGATGATTACAGGGATAGAGCTAT
AGTAGAGTGTGGATAATACGTAAAGCCTATATCATACATGAAGAACAAGC
AGTTCGTGATCCTGCGCGACTTTGGACAGCCCCGCCCGCCAAACTTTGAG
CGGTGAGTGGTACATGGAGTCCCATGCAAACCATCCACGTTCTGCGAGAA
GACCCGGGGCTCCGCTCGGTGCCACGGACCTCCCTTTTTGCTGATGCCGG
AGAGGGTAGCGTAACCTTCTTTCATAAATCACTATATGCTCGTGCGTGTT
GCGCGTGCGAACAGGTGGATTTTCTGGGCCCCGTCAGGTGGACGAGCAAG
CCGCTGAACTTCCCGTTCGCCCTGAAGGAGCCCACCCCCATGGTGATTGG
CATCGTGCACGACGTCAAGACGAAAGAGGGCCAGCTGAACTTCTCCGCCA
AGCTCAGCAACAACTTCGACGGGAAGGTCGTCCTCCCTTCGACGGGAGAC
CCGATCGCGACGGTGATCGCGTCGCACAGGTGCGGTCAAGGTCAAGGCCC
CCCTCTGGCCGTTTGGGCTCTCGCTCACCTCCACGTGCGGCCTCGGCGCT
CAAGCTTTGTAACCGTCGACGTCCCCCGGTGACGAGGTTTCGAATCCCCT
CCCTTGCTATTATTCATATTAATATTGAAGTATTATAGTAGCTCTGACAA
ACTCTTTCGCCCAAAATATTAGAGAACGTCCTTGCTTACTGTACCTGCGA
GACCGACTCCTTCGGCGTGTACCGACTTCACTGCCTGTCAGCCCGGACAA
GGACTCGGACATCAGGGCTTCGGCGAACGTGCTGGATCTTCTGGGCTCGG
GTGTTGGCAAGGGATCTATCGGAGTATCTTACAGGCGCGATTTGGACACC
GTGCAGGTGAGCGACGAGTCTCTCTCGTGTAGGGGAGGCATCGATTGGAA
CGACGTTCACACCTCTAGAGCCATGGAGCTACGCCAGTTAACAATTTTGT
GTACAGTACACTAGCTCTCTGATTGATAGCATTGCTTATAGTATGAGCGT
GTTCCGTTCTTTGCACAACCTTTGGAGTTCCAGTTTTATCTGTCGCAGCT
CCTTGCGGGGGGGATCACGCGCAACCCAGCACCAACATCGCCAACCTCTT
GAGCATAATAATATCTTGGGGATTTCGTAGTGATTGGTAGCTGTTGTAGG
CTGATGATGATGCCGCAGACTCCTTGCTGTATCTACTCTACAGTAGGTAT
CCCCCATCTACTGTACGCCAAGTACCCTATAAAAGTACCGGAGAAAACCT
TTCAAAAAGAGAAAAGTACTCCAGCTAAAGTCGACCCCACATAAGATTTC
GTAACGCTCGATACCGCTGGCCGCTCATGGATGTGCGTGTCGTGCTCAGG
GGTCGAGCTCTAGGGTCACCCTTGAGGGCAAGGACACGGGAGACTTCGCT
TGGAGCCTGAGCAATACAACTAAGCGGATGACGCTCGTGCTTTCTGGTAG
GGGTAGGCTGCGTCTGCGAGGCGAGGAGGAAGGGATCTCGAGCACCGTGG
CCCTGAGATCAAGCTTCCGCGTGTTCTAGACTCGGCTTTGCGCAGCCCGA
GCGTGACGGCCGGTCGGTGGCACGTGTGCCGTGCCACCGTGCCCAATAAC
GTCCACTTTTCCCTGTAGAGTATCTTTTGGGCACGGCAATAGCGCCACAG
TCGGCCTACCAATATTTTTGTATTTGCAACTGCTGAAGTGACTTTTCGAT
GTCTGTTTTAGATTATATGCTGTACTGCCTTGACGTTGTTCGTTCTGCTG
AAGGTTTCGAACAGTGGCGAAGGAATGCTGGATACGTCTCAGACTTTGTT
GACTAAATGGGTCTCTTGCGCTGCTGAAAAATGTTTGATGAGTTGAGATC
AAGTCACATTTGCTTCGAGAGGGCGCAAATACTGTACACCAGAAGCGACG
TGCAGTGTGGAAGTATGCCTCTAGAGATGTGCGATGGGAACACTATTTTG
GAACCTGCGCATTTGCCTGAGTATTAAATGCTGTCTTTTTACGATTTACT
CGTTCTTTTTCAGGTTTGATTTCACGCACCTCTGTACGCTTTTTTCCTGA
ACAGTAGGCAGGGAGACCGCCCTGACTTGAGAATTATGATACTCTGATCC
GACGAAACTCGTGAAGATTTTAAACCAGCTAGAGTAATAGCCTTTCGTCA
AATCGTATCAACCCGCGTCAGCGAGCTGAATCAAACCGTACCCTGTCACT
TTAGGGATTCCAAGAAGACTAGGCTTGACTTGAGTGCAATGCAAGGAGGC
ATGCATGACTGCCGTACCCACTTTTGTCTTCTTTTTTTAACAGCCGACGG
TCTGTGAGACCACTTTCGACACTTGATTAAAAAAGAGTTCACTCCGCTCT
ATATTTGCCGGGTAGTTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9806:6568..10136-

>mRNA_P-canaliculata_contig9806.23903.1 ID=mRNA_P-canaliculata_contig9806.23903.1|Name=mRNA_P-canaliculata_contig9806.23903.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig9806:6568..10136- (Pelvetia canaliculata dioecious)
ATGGGTGCGGCCACCGTCACCGACACCAAGTTCGGAACGCTCACGAGCAC
GGTTTCCGTTGACCCACAGATGGGTGCGGCCACCGTCACCGACACCAAGT
TCGGAACGCTCACGAGCACGGTTTCCGTTGACCCACAGGAGAGGAGCGCT
AGCGTGGATGCGACTCTATACACCGAGGACTACGGGACGTTCTCTACCTC
GTTGAAAGCAAAGGACAAGGTAAAGGACAAGGAGAGGAGCGCTAGCGTGG
ATGCGACTCTATACACCGAGGACTACGGGACGTTCTCTACCTCGTTGAAA
GCAAAGGACAAGGTAAAGGACAAGGTGGATTTTCTGGGCCCCGTCAGGTG
GACGAGCAAGCCGCTGAACTTCCCGTTCGCCCTGAAGGAGCCCACCCCCA
TGGTGATTGGCATCGTGCACGACGTCAAGACGAAAGAGGGCCAGCTGAAC
TTCTCCGCCAAGCTCAGCAACAACTTCGACGGGAAGGTCGTCCTCCCTTC
GACGGGAGACCCGATCGCGACGGTGATCGCGTCGCACAGGTGGATTTTCT
GGGCCCCGTCAGGTGGACGAGCAAGCCGCTGAACTTCCCGTTCGCCCTGA
AGGAGCCCACCCCCATGGTGATTGGCATCGTGCACGACGTCAAGACGAAA
GAGGGCCAGCTGAACTTCTCCGCCAAGCTCAGCAACAACTTCGACGGGAA
GGTCGTCCTCCCTTCGACGGGAGACCCGATCGCGACGGTGATCGCGTCGC
ACAGCCCGGACAAGGACTCGGACATCAGGGCTTCGGCGAACGTGCTGGAT
CTTCTGGGCTCGGGTGTTGGCAAGGGATCTATCGGAGTATCTTACAGGCG
CGATTTGGACACCGTGCAGGTGAGCGACGAGTCTCTCTCCCCGGACAAGG
ACTCGGACATCAGGGCTTCGGCGAACGTGCTGGATCTTCTGGGCTCGGGT
GTTGGCAAGGGATCTATCGGAGTATCTTACAGGCGCGATTTGGACACCGT
GCAGGTGAGCGACGAGTCTCTCTCTAGGTATCCCCCATCTACTGTACGCC
AATAGGTATCCCCCATCTACTGTACGCCAAGGGTCGAGCTCTAGGGTCAC
CCTTGAGGGCAAGGACACGGGAGACTTCGCTTGGAGCCTGAGCAATACAA
CTAAGCGGATGACGCTCGTGCTTTCTGGTAGGGGTAGGCTGCGTCTGCGA
GGCGAGGAGGAAGGGATCTCGAGCACCGTGGCCCTGAGATCAAGCTTCCG
CGTGTTCTAGGGGTCGAGCTCTAGGGTCACCCTTGAGGGCAAGGACACGG
GAGACTTCGCTTGGAGCCTGAGCAATACAACTAAGCGGATGACGCTCGTG
CTTTCTGGTAGGGGTAGGCTGCGTCTGCGAGGCGAGGAGGAAGGGATCTC
GAGCACCGTGGCCCTGAGATCAAGCTTCCGCGTGTTCTAG
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