mRNA_P-canaliculata_contig98025.23900.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98025.23900.1
Unique NamemRNA_P-canaliculata_contig98025.23900.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Match: A0A518EPK8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EPK8_9BACT)

HSP 1 Score: 133 bits (334), Expect = 1.990e-33
Identity = 85/223 (38.12%), Postives = 124/223 (55.61%), Query Frame = 1 
Query:    1 YGDHHVAVVGDEIITRSDVLIHLS--RSKEPTEGYEGLTQMQILEQRYLEALEELIDAKLKTQGGENLGFDPELIERATDSAFDSQIRRWGGEQRAAEALKSMNFTPDRLKAYYRDRMLGQSWEATVTGEGPGPTGRPIQDPYIRPGELKALYRELSNSRRTEDQEKVGKS-QGKVTIQEFLMAV----RSPDAVEESESFVAALRENVTGGILTFDQAVAQY 648
            YG+ HVAVVG+EIITR DV   L   R ++PT     L   +    +   AL +LI+ +LK QGG + G++ ELIE   +  F +++   GG Q AA   +    TP+  K    + ++   WE ++ G+ PG TGR   D YIRPG+  A YRE   +R  +    VGK+ QGKV++Q  ++ V    R P+AV+     +  LRE +  GILTFD+A+  +
Sbjct:   50 YGNFHVAVVGEEIITRIDVFSWLGSPRFEDPTVDQPDLDPAKRQALKISAALTQLIEQRLKIQGGRSQGYEEELIEAERERFFRAKLEELGGAQAAAANFERFGITPNDYKNLLGEGLMANLWENSIKGDLPGATGRIFVDSYIRPGQQWARYREYVEARDEKLNAVVGKTRQGKVSVQRIVLMVTPGGRPPEAVKGE---IETLRERIQDGILTFDEAIRTF 269
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BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Match: A0A521K9X2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K9X2_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 3.280e-9
Identity = 58/215 (26.98%), Postives = 91/215 (42.33%), Query Frame = 1 
Query:   16 VAVVGDEIIT--RSDVLIHLSRSKEPTEGYEGLTQMQILEQRYLEALEELIDAKLKTQGGENLGFDPELIERATDSAFDSQIRRWGGEQRAAEALKSMNFTPDRLKAYYRDRMLGQSWEATVTGEGPGPTGRPIQDPYIRPGELKALYRELSNSRRTEDQEKVGKSQGKVTIQEFLMAVRSPDAVEESESFVAALRENVTGGILTFDQAVAQYAE 654
            + V+ D+ IT  R D  I L   K P    E   ++  L +R       ++D +L+TQ GENLG D + +ER      + Q  +  G    AE L+         +   RDR    SW     GE  G  GR  +D Y+RPGEL   Y++        D         +V +Q   ++      ++ +   +    E+V  G +TFD  V + ++
Sbjct:   42 IQVINDDAITAARLDREIQLLLRKYPVTTQEDHEKLVALARR------RVVDERLQTQAGENLGLDEKEVERRGKLIREKQKEK--GLDLLAEDLQKQGLDAAGAQRSMRDRTYQASWFYPAIGELQGVRGRFWRDTYVRPGELLHAYQQSKADLAEPD---------RVVLQLLDVSAADNGGMDRARKAIDQACEDVAAGRMTFDDCVDEMSQ 239
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BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Match: A0A518BRM6_9BACT (Chaperone SurA n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BRM6_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.570e-6
Identity = 44/154 (28.57%), Postives = 72/154 (46.75%), Query Frame = 1 
Query:    7 DHHVAVVGDEIITRS--DVLIHLSRSKEPTEGYEGLTQMQILEQRYLEALEELIDAKLKTQGGENLGFDPELIERATD--SAFDSQIRRWGGEQRAAEALKSMNFTPDRLKAYYRDRMLGQSWEATVTGEGPGPTGRPIQDPYIRPGELKALYR 456
            D  +AV GD +ITR   D  + +++++ P    E   +++       E +   + A L  Q GE L    E++E         +   R   G +   +AL++    P  ++   RD++    WEA V G+     GRP  D +IRPGEL+ +YR
Sbjct:   35 DGVLAVAGDRVITRQQWDRSVQMAKAQNPVATLEQEQELRF------EVMRSEVMALLTAQAGEELEVPAEMVEAQVRYRREMEEDARGVVGYR---DALEASGIDPLDMERATRDQLYRGQWEAYVVGDENYAGGRPEVDRFIRPGELRTVYR 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98025.23900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A518EPK8_9BACT1.990e-3338.12Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521K9X2_9BACT3.280e-926.98Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BRM6_9BACT2.570e-628.57Chaperone SurA n=1 Tax=Planctomycetes bacterium Pl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98025contigP-canaliculata_contig98025:417..1070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.4060328-CDS-P-canaliculata_contig98025:416..10701622817342.4060328-CDS-P-canaliculata_contig98025:416..1070Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98025 417..1070 +
1693495235.001754-CDS-P-canaliculata_contig98025:416..10701693495235.001754-CDS-P-canaliculata_contig98025:416..1070Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98025 417..1070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98025.23900.1prot_P-canaliculata_contig98025.23900.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98025 417..1070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98025.23900.1

>prot_P-canaliculata_contig98025.23900.1 ID=prot_P-canaliculata_contig98025.23900.1|Name=mRNA_P-canaliculata_contig98025.23900.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=218bp
YGDHHVAVVGDEIITRSDVLIHLSRSKEPTEGYEGLTQMQILEQRYLEAL
EELIDAKLKTQGGENLGFDPELIERATDSAFDSQIRRWGGEQRAAEALKS
MNFTPDRLKAYYRDRMLGQSWEATVTGEGPGPTGRPIQDPYIRPGELKAL
YRELSNSRRTEDQEKVGKSQGKVTIQEFLMAVRSPDAVEESESFVAALRE
NVTGGILTFDQAVAQYAE
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mRNA from alignment at P-canaliculata_contig98025:417..1070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98025.23900.1 ID=mRNA_P-canaliculata_contig98025.23900.1|Name=mRNA_P-canaliculata_contig98025.23900.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig98025:417..1070+ (Pelvetia canaliculata dioecious)
TACGGGGACCACCATGTGGCCGTCGTGGGTGATGAGATCATCACCCGCTC
CGACGTTCTGATCCACCTGTCCCGCTCCAAAGAGCCCACGGAGGGCTACG
AGGGCCTCACCCAAATGCAGATCCTCGAGCAGCGGTACCTCGAGGCCCTT
GAGGAGCTGATCGACGCCAAGCTGAAGACCCAGGGGGGCGAGAACCTTGG
CTTTGACCCCGAACTCATCGAGCGAGCCACCGACTCCGCGTTCGATAGCC
AAATCCGCAGGTGGGGCGGCGAGCAGAGGGCCGCTGAAGCCCTCAAGAGC
ATGAACTTCACGCCGGACCGCCTGAAGGCCTACTACCGCGACCGGATGCT
CGGACAGTCCTGGGAAGCCACCGTGACCGGCGAGGGCCCTGGCCCCACTG
GCCGCCCGATTCAGGACCCCTACATCCGCCCCGGCGAATTGAAGGCCCTC
TACCGGGAGCTCAGCAATTCGCGGCGGACGGAGGACCAAGAGAAAGTCGG
TAAGAGCCAGGGCAAGGTCACCATCCAGGAATTCCTCATGGCCGTCCGAA
GCCCGGACGCGGTGGAGGAATCAGAGAGCTTCGTCGCGGCGCTCCGGGAG
AACGTCACCGGTGGCATCCTGACCTTCGACCAGGCTGTTGCCCAGTATGC
CGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig98025:417..1070+

>mRNA_P-canaliculata_contig98025.23900.1 ID=mRNA_P-canaliculata_contig98025.23900.1|Name=mRNA_P-canaliculata_contig98025.23900.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at P-canaliculata_contig98025:417..1070+ (Pelvetia canaliculata dioecious)
TACGGGGACCACCATGTGGCCGTCGTGGGTGATGAGATCATCACCCGCTC
CGACGTTCTGATCCACCTGTCCCGCTCCAAAGAGCCCACGGAGGGCTACG
AGGGCCTCACCCAAATGCAGATCCTCGAGCAGCGGTACCTCGAGGCCCTT
GAGGAGCTGATCGACGCCAAGCTGAAGACCCAGGGGGGCGAGAACCTTGG
CTTTGACCCCGAACTCATCGAGCGAGCCACCGACTCCGCGTTCGATAGCC
AAATCCGCAGGTGGGGCGGCGAGCAGAGGGCCGCTGAAGCCCTCAAGAGC
ATGAACTTCACGCCGGACCGCCTGAAGGCCTACTACCGCGACCGGATGCT
CGGACAGTCCTGGGAAGCCACCGTGACCGGCGAGGGCCCTGGCCCCACTG
GCCGCCCGATTCAGGACCCCTACATCCGCCCCGGCGAATTGAAGGCCCTC
TACCGGGAGCTCAGCAATTCGCGGCGGACGGAGGACCAAGAGAAAGTCGG
TAAGAGCCAGGGCAAGGTCACCATCCAGGAATTCCTCATGGCCGTCCGAA
GCCCGGACGCGGTGGAGGAATCAGAGAGCTTCGTCGCGGCGCTCCGGGAG
AACGTCACCGGTGGCATCCTGACCTTCGACCAGGCTGTTGCCCAGTATGC
CGAGTACGGGGACCACCATGTGGCCGTCGTGGGTGATGAGATCATCACCC
GCTCCGACGTTCTGATCCACCTGTCCCGCTCCAAAGAGCCCACGGAGGGC
TACGAGGGCCTCACCCAAATGCAGATCCTCGAGCAGCGGTACCTCGAGGC
CCTTGAGGAGCTGATCGACGCCAAGCTGAAGACCCAGGGGGGCGAGAACC
TTGGCTTTGACCCCGAACTCATCGAGCGAGCCACCGACTCCGCGTTCGAT
AGCCAAATCCGCAGGTGGGGCGGCGAGCAGAGGGCCGCTGAAGCCCTCAA
GAGCATGAACTTCACGCCGGACCGCCTGAAGGCCTACTACCGCGACCGGA
TGCTCGGACAGTCCTGGGAAGCCACCGTGACCGGCGAGGGCCCTGGCCCC
ACTGGCCGCCCGATTCAGGACCCCTACATCCGCCCCGGCGAATTGAAGGC
CCTCTACCGGGAGCTCAGCAATTCGCGGCGGACGGAGGACCAAGAGAAAG
TCGGTAAGAGCCAGGGCAAGGTCACCATCCAGGAATTCCTCATGGCCGTC
CGAAGCCCGGACGCGGTGGAGGAATCAGAGAGCTTCGTCGCGGCGCTCCG
GGAGAACGTCACCGGTGGCATCCTGACCTTCGACCAGGCTGTTGCCCAGT
ATGCCGAG
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