mRNA_P-canaliculata_contig98010.23898.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98010.23898.1
Unique NamemRNA_P-canaliculata_contig98010.23898.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98010.23898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98010contigP-canaliculata_contig98010:678..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.3247142-CDS-P-canaliculata_contig98010:677..9981622817342.3247142-CDS-P-canaliculata_contig98010:677..998Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98010 678..998 +
1693495234.976975-CDS-P-canaliculata_contig98010:677..9981693495234.976975-CDS-P-canaliculata_contig98010:677..998Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98010 678..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98010.23898.1prot_P-canaliculata_contig98010.23898.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98010 678..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98010.23898.1

>prot_P-canaliculata_contig98010.23898.1 ID=prot_P-canaliculata_contig98010.23898.1|Name=mRNA_P-canaliculata_contig98010.23898.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=107bp
LLPRYHEKQLLYMRSNRRLASSEPHPTAVHTKYSNRAVLQYIQYRQYTRV
DTYFNNLRGATGSEGRRARSTAVYTIHDELVPFSIFTENNCSFSRSRSTH
ARQVKI*
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mRNA from alignment at P-canaliculata_contig98010:678..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98010.23898.1 ID=mRNA_P-canaliculata_contig98010.23898.1|Name=mRNA_P-canaliculata_contig98010.23898.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at P-canaliculata_contig98010:678..998+ (Pelvetia canaliculata dioecious)
TTGCTGCCTCGATACCATGAAAAACAACTCCTGTATATGAGGAGCAACAG
ACGACTCGCGTCCTCCGAACCTCATCCTACTGCTGTACACACTAAGTACA
GCAACCGTGCCGTCCTACAGTACATACAGTATCGTCAATACACGCGAGTA
GATACATACTTTAACAATTTACGGGGTGCCACCGGAAGCGAGGGGCGCAG
AGCTCGCTCTACGGCAGTCTACACGATACATGATGAGCTGGTGCCCTTTT
CTATTTTCACAGAGAACAACTGTAGCTTCTCGCGTTCACGTAGCACGCAT
GCAAGACAAGTAAAAATATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98010:678..998+

>mRNA_P-canaliculata_contig98010.23898.1 ID=mRNA_P-canaliculata_contig98010.23898.1|Name=mRNA_P-canaliculata_contig98010.23898.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at P-canaliculata_contig98010:678..998+ (Pelvetia canaliculata dioecious)
TTGCTGCCTCGATACCATGAAAAACAACTCCTGTATATGAGGAGCAACAG
ACGACTCGCGTCCTCCGAACCTCATCCTACTGCTGTACACACTAAGTACA
GCAACCGTGCCGTCCTACAGTACATACAGTATCGTCAATACACGCGAGTA
GATACATACTTTAACAATTTACGGGGTGCCACCGGAAGCGAGGGGCGCAG
AGCTCGCTCTACGGCAGTCTACACGATACATGATGAGCTGGTGCCCTTTT
CTATTTTCACAGAGAACAACTGTAGCTTCTCGCGTTCACGTAGCACGCAT
GCAAGACAAGTAAAAATATAATTGCTGCCTCGATACCATGAAAAACAACT
CCTGTATATGAGGAGCAACAGACGACTCGCGTCCTCCGAACCTCATCCTA
CTGCTGTACACACTAAGTACAGCAACCGTGCCGTCCTACAGTACATACAG
TATCGTCAATACACGCGAGTAGATACATACTTTAACAATTTACGGGGTGC
CACCGGAAGCGAGGGGCGCAGAGCTCGCTCTACGGCAGTCTACACGATAC
ATGATGAGCTGGTGCCCTTTTCTATTTTCACAGAGAACAACTGTAGCTTC
TCGCGTTCACGTAGCACGCATGCAAGACAAGTAAAAATATAA
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