mRNA_P-canaliculata_contig98.23894.1 (mRNA) Pelvetia canaliculata dioecious
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Match: D7FJS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS0_ECTSI) HSP 1 Score: 389 bits (999), Expect = 1.350e-106 Identity = 522/1713 (30.47%), Postives = 692/1713 (40.40%), Query Frame = 1
Query: 1 PAGWLSTAISSGKLGVAADDID-DDDGQTGEDGRSLKMVTSSTQDRETEDSTRAPAST------LPPWAARWTPP-SPDPPPEVEEKSTVVSEAKPKPSGLDWIKSEMPYWLKEV----SSR---GGVSMHDTVASARNSDGAVLSGRGGETNVA-PPTVGAAAS----ESGVDCVVDSVVSEKTEARVREGREERYPSAMTAAATS--------GGWLTSGKLGVSIEKDSGDEVGTGGVCDSGYELSTARKGRKPKSDVKTSSSATIPTTTGPGGWLASGTLGVPVDDESERTAQDGDGCMRGSFMMSEETQTEEDIEEVAKKGTGSKLPPWAKPWTPPPEPDVTVDP-------VPPRDKDTKKQDIAVVVTPDWILASLGQGDDNAAAETATSEGLDSEGNGLDWLAKVVDPASSSVQGLPPAAAGSNTSDWLLHTVVDGGGGVGGAKLKKPNQP-----STSVAPDALSWMTKMKRRSSIDLEDPCVEALVVETKTKAEPGGWMQSGALGSPDSIEEEKALEEARAAS----------SHSRGRRESLAGGLPPWAPMQQQKKAPVLVDAAPATSXXXXXXXXXXXXXXAP-------AVATEASSRLRKAGAPSTHKDARQGGCSSEKQQAQQLALPDWLTIAAVSQCPCIFDNRDRLQENRDDCDAVADDREGGLDWLKAAITSDKKVAATPSAIVTVHESVDESRSTQAAMSIAVGDSVHGGGTKNVVRRRS-SLVTTEGWISMN-LGLPV----DDEYALNGKESDVRGTGMVSKTAKKRSPGIAANDDRGLVVQPAGWLSAAISTGKIGVAADDSDDDDGQTGEDGRSLNMVSSSTHWEDGETEDRTRAPAST-----FPPWAERWTPPSPDPP--PEIEEQPTVES-EAKPKPSG--LDWIKNEMSCTPADTSKGASAGDDKVVA---NGCSNTIGESSGLDWLKETNATSAPPTVGATVGGSGI-DRLVDAAASEKTEARVREGREDRNPSAMTAAATSGDWLTSGKLGVSIEKASGDDAGTGGVCDSGHGLSTGRKSKPGVKTSSSAIISTATGPGGWLASGTLGVPVDDESERSAQDGEEGMRGSFMVSEETQTEEDIEEIAKKGTGSKLPPWAKPWTPPSEPDATGDPVPLRDKDNKKQDIAVAVTPDWILASLGQSHDDAPAETATSGGLDSEGKGLDWLAKVLDPGSMLLPTAAGSNTFDWLLQTVVGGGGGAGEAK--------LKKKPNQPSTSVAPNPLSWMTKMKHRSSIDLEDPCTEALVVEAKTKAGRGSWMQSGTLGAPDSIEEEKALEEARAASSYPRPSNKACSSD---ATADRHPSLSDGAPAWTLKQLTETGAGESKEPWRGRRGSLAGGLPPWAPTQQQ-------EKAPVLVDVAPATSXXXXXXXXXXXXXXVPSVATELSSRLNHGGYVSPCVPEPLAGSVGKAGAPSTYYEDTRQGWCSSEKQQAQQLTLPDWLTVAAGGSSTKAEKRFPGIAANDDIEPVAQPAGWLSAAISTGKIGVAADDAAARGSGIDWLVDTAASEKTEARVREGREERNPYAMTAAATG-GWLTSGKLGVSTEKDRGHE----AGTGGVCGSGHELSTGRKPKSGIKMSSSATIPTTTGPGGWLA----SGTLGVPVDDESERSTQDVDGGMRSSFMVSGETQTEEYIEEVAKKGIG----SKLPPWAKPWTPP 4815
P GW+S SG LG A+D D+D GE R + + + + + E T+ A+ LPPWA + PP P+ P+ K+ + P+ G SE+P WL V SSR G + + +A D A G T A T GAAA A G+ +R P A AA GGWL+S KLGVS E+DS + D+G + K +K K + S S + G +++ ETQTE+DIE V ++G KLPPWAKP+ PPP+ DV D +PP ++T TPDWILASLG D + + + G G +WL++ + + P +N DWL P Q +V LSWM ++KR+SS+DL+D VE V + K KA PGGW+Q G LG+PD++ EE LE+ARAAS S S GRR SL+GG PPWAP +++ + D+ T+ XXXXXXXXX AVA EA + +K G+ K+ + S + + DWL AA + ++ + L E RD D A GL WL A S K AA T VD S A +AV S V+R S GW+S LGLP DD+ A GK S G+G V+K RG V ++G G++ R V+ T +D + E TR A PPWA+ + PP P P P+ + T+E E +P SG W+ ++ PAD + G ++ + G G + GL WL E ++ T AT + + D L DA + T+ R A +A G W++SGKLGVS G D G D G +K +P S +S A GP GWL+SG LGVP DES+ D + G M + ETQTEE+IEE K G KLP ++ D TPDWILASLG + A A A G S G DWL + G T GSN DWL Q A AK ++P + +PLSWMT MK RSS+DL D E + +AK K G W+Q G LGAPD++EE ALEEARAASS R S + AT R PSL G P W K T A S RGR QQ E+ D +P XXXXXXXXXXXXX VA G+P++ + + + LPDWLT AAGG S + R G + D + GWL+ + D ++ + L D A +E+T A + + G GWL++ + K R HE A + V S ++ T PGGWLA SG LG DD D + TQT++ + AKK + SK P KP PP
Sbjct: 580 PGGWMS----SGALGAPAEDESGDEDSGGGETDRGVGVTIETQTEEDIEAVTKGGATEKGNAPKLPPWAKPYVPPPKPEVVPDTPPKADSAPQGAPEKQG-----SEIPDWLAAVAGTSSSREDPSGAMIEEAGPTAGQEDSAGGGGLSWLTQAARSSTFGAAAPIDXXXXXXXXXXXXXXXXXXXAAKSTGQTKRKPHATATAAAKAAAVPAAPGGWLSSVKLGVSTEEDSDQD-------DAGKTAGRSTKSKKKKKQARGSVSVASXX------XXXXXXXXXXXPEXXXXXXXXXGGGDSQPVLVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVAPDSTADSTAEIPPEKEETDAS-----ATPDWILASLGDQDADGFSGGVPASG----GGSNNWLSQAAEQEPGAGASDMPNTGDTNAPDWLQQAAAPNAKPKHRQAASMPQQRPGIARKAAVPASPLSWMKQVKRQSSMDLDDQTVETTVAQAKAKAAPGGWLQIGVLGAPDALAEENELEQARAASPLTSTGPESRSRSEGRRPSLSGGPPPWAPAKEEG---AVGDSGSTTTSTHDVXXXXXXXXXXXXXXXXPTAVAAEAETTEQKEGSEEAAKEKGEPATSG-------VRVSDWLAAAATTGTASGEESTNALGEERDQQDGEASGGSDGLSWLTQAADSHKPSAAASGIPSTA--GVDSSEGDAGADWLAVAKSSGQAKRSPAVKRPSVGAAAPGGWMSSGKLGLPAGDGSDDDQA--GKTS---GSGGVAKAKXXXKA-------RGSVSGTXXXXXXXXXXXXXXXXXXXXXXEEGSGGDNDRRGAAVTIETQTDD-DIEAATRGAAERGSTRKLPPWAKPYVPPDPIPEVVPDTAAELTIEKQELEPAGSGGVPSWLAA-VAGAPADEKHSDALGQERALEADEGGVGQASGGNDGLGWLTEA---ASKDTAAATPASTSVPDWLGDATSRGMTKHNKSSTAAKR---ASIKSAAPGGWMSSGKLGVSTGD-DGSDEDQAGKTDRGSAKPRKKKKQP-----SRGSVSAAGGPAGWLSSGALGVPAQDESDEDGGDSDGGR--PLMATTETQTEENIEEATKTANGPKLPXXXXXXXXXXXXXXXXXXXXXXXXXEQEHDTPA--TPDWILASLGPDAEGAAAAPAPGG---SPG---DWLVQENQAGGGPTGTGGGSNGPDWLQQATA-----APTAKPANRSRGAATQRPGGGRKAATQSPLSWMTSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQMGALGAPDAVEEANALEEARAASSLTRTSTNGKGTPGAAATDVRRPSLEQGLPPWAPKLATTALASSSSS--RGRXXXXXXXXXXXXXQHQQGGGSPSAEQLKARADESPXXXXXXXXXXXXXXXXADKKVAAGSDGSSRRRXXXXXXXXXXXXXXAAPGGSPTSRSRGQEEDELPVPESEQATPALPDWLTAAAGGGSAPKDTRGDG-ESTIDTDDDGGGLGWLTQXXXXXTTSKSQDRKGSQEAADTALDDEARTERTAAGSTDAACNDVSSEHSGGGEGLGWLSAAVVRRPQMKSRTHELQPTATSTNVVASKSRAQ--QRXXXXXXXXXXXXXXXXTAPGGWLALSVASGNLGGLSDDGESHLVGDGTNNGGDTGKEDTATQTDDVVIVEAKKSVSEQTTSKNP--TKPKLPP 2201
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Match: A0A6H5KKG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG6_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.870e-44 Identity = 171/486 (35.19%), Postives = 216/486 (44.44%), Query Frame = 1
Query: 70 DDGQTGEDGRSLKMVTSSTQ-DRETEDSTRAPAST-----LPPWAARWTPPSPDPPPEVEEKSTVVSEAKPKPSGLDWIKSEMPYWLKEVSSRGGVSMHDTVASARNSDGAVLSGRGGETNVAPPTVGAAASESGVDCVVDSVVSEKTEARVREGREERYPSAMTAAATSGGWLTSGKLGVSIEKDSGDEVGTGGVCDSGYELSTARKGRKPKSDVKTSSS-ATIPTTTGPGGWLASGTLGVPVDDESERTAQDGDGCMRGSFMMSEETQTEEDIEEVAKKGTGSKLPPWAKPWTPPPEPDVTVDPVPPRDKDTKKQDIAVVVTPDWILASLGQGDDNAAAETATSEGLDSEGNGLDWLAKVVDPASSSVQGLPPAAAGSNTS-DWLLHTVVDGGGGVG----GAKLKKPNQPSTSVAPDALSWMTKMKRRSSIDLEDPCVEALVVETKTKAEPGGWMQSGALGSPDSIEEEKALEEARAASSHSR 1491
++G GE R V TQ D + E +TR A LPPWA + PP DP EV + S + K D + E E GGV + R+ G + T A P AS S D + + T+ R +R A +A GGW++SGKLG++ DS DE G T R KP+ K ++P GP GWL+SG LGVP ES+ D DG M + ETQTE++IE K G KLPPWAKPWTP P TPDWILASL + AAA A G+ DW + + G P G +T DWL G GA ++P + A LSWM+ MKRRSS+DL D VE + + K K PGGW+Q GALG+PD++EE ALEEARAASS +R
Sbjct: 402 EEGSGGEKDRRGAAVNIETQTDNDIEAATRGAAEKGDTRKLPPWAKPYVPP--DPTQEVVPDTAAESTIE-KQKNSDALGQERALEADE----GGVGQ---ASGGRDGLGWLTEAANKNTAAATP-----ASSSAPDWLAGAKSRGTTKHNKRSTAAKR---ASIGSAAPGGWMSSGKLGLATGDDSSDEDQAG---------KTDRGSAKPRMKKKKQQRRGSVPAAGGPAGWLSSGALGVPAQYESDENGGDSDGGR--PLMATTETQTEDNIEAATKTANGPKLPPWAKPWTPXPPXXXXXXXX--XXXXXXXXXXXXPGTPDWILASLDPDTEGAAAAPAPG------GSPGDWHVQ-----ENQAGGGPAGTGGGSTGPDWLQQATAASTGKPANRWRGAATQRPGGGRKAAAQSPLSWMSSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQIGALGAPDAVEEANALEEARAASSLTR 845
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Match: A0A6H5KVL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL2_9PHAE) HSP 1 Score: 154 bits (388), Expect = 6.920e-34 Identity = 119/343 (34.69%), Postives = 161/343 (46.94%), Query Frame = 1
Query: 514 GREERYPSAMTAAATS--------GGWLTSGKLGVSIEKDSGDEVGTGGVCDSGYELSTARKGRKPKSDVKTSSSATIPTTTGPGGWLASGTLGVPVDDESERTAQDGDGCMRGSFMMSEETQTEEDIEEVAKKGTGSKLPPWAKPWTPPPEPDV----TVDPVPPRDKDTKKQDIAVVVTPDWILASLGQGDDNAAAETATSEGLDSEGNGLDWLAKVVDPASSSVQGLPPAAAGSNTSDWLLHTVVDGGGGVGGAKLKKPNQPS-----TSVAPDALSWMTKMKRRSSIDLEDPCVEALVVETKTKAEPGGWMQSGALGSPDSIEEEKALEEARAASSHSR 1491
G+ +R P A AA GGWL+SGKLGVS E+++ + D+G TA + PK K + A +P GDG +++ ETQTE+DIE V ++G KLPPWAKP+ PPP+ DV T D K +K++ PDWILA+LG D + + G G +WL+ + + P +N DWL P Q S +V LSWM ++KRRSS+DL+DP VE V + K KA PGGW+Q GALG+PD++ EE LE+ARAAS +R
Sbjct: 761 GQTKRKPHATATAAAKAAAVPAAPGGWLSSGKLGVSTEEENDQD-------DAGK---TAGRSTTPKKKKKQAIGA-VPVAXXXXXXXXXXXXXXXXXXXXXXXXGGGDGQ---PILVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVVPESTADSX--XXKTPEKEETDASAAPDWILAALGDQDADGFRGGVPASG----GGSKNWLSHAAEQEPGAGASDMPNTGDTNAPDWLQQAAAPSAKPKDRQAASIPQQRSGIARKAAVPASPLSWMKQVKRRSSMDLDDPTVETTVAQAKAKAAPGGWLQIGALGAPDALAEENELEQARAASPRTR 1083 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98.23894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98.23894.1 >prot_P-canaliculata_contig98.23894.1 ID=prot_P-canaliculata_contig98.23894.1|Name=mRNA_P-canaliculata_contig98.23894.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=1605bp PAGWLSTAISSGKLGVAADDIDDDDGQTGEDGRSLKMVTSSTQDRETEDSback to top mRNA from alignment at P-canaliculata_contig98:37335..49566- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98.23894.1 ID=mRNA_P-canaliculata_contig98.23894.1|Name=mRNA_P-canaliculata_contig98.23894.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=12232bp|location=Sequence derived from alignment at P-canaliculata_contig98:37335..49566- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98:37335..49566- >mRNA_P-canaliculata_contig98.23894.1 ID=mRNA_P-canaliculata_contig98.23894.1|Name=mRNA_P-canaliculata_contig98.23894.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=9630bp|location=Sequence derived from alignment at P-canaliculata_contig98:37335..49566- (Pelvetia canaliculata dioecious)back to top |