mRNA_P-canaliculata_contig9796.23892.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9796.23892.1
Unique NamemRNA_P-canaliculata_contig9796.23892.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.280e-10
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:    1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 354
            MM+ DKL  ++  + D     Q   VI++  L  DF+   R+LE+ P  ++    +  +  ++ R   ++    AL A+RG ++  + +R       +FNGKCF+CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMPG-IDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119
[Close]
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.270e-8
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:    1 MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLEN--NPDDLNRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFNGKCFKCGKKGHRAGDCRS 354
            MM+ DKL  ++  +GD     Q   VI++  L  +F+   R+LEN    D ++  E  R    ++ R   ++     L  +RG ++  + +R       +FNGKCF+CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENITGIDLMSAKETPR---REWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9796.23892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0W6E8_9STRA4.280e-1031.36Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA5.270e-831.67Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9796contigP-canaliculata_contig9796:727..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.7402618-CDS-P-canaliculata_contig9796:726..10801622817341.7402618-CDS-P-canaliculata_contig9796:726..1080Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9796 727..1080 -
1693495234.586709-CDS-P-canaliculata_contig9796:726..10801693495234.586709-CDS-P-canaliculata_contig9796:726..1080Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9796 727..1080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9796.23892.1prot_P-canaliculata_contig9796.23892.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9796 727..1080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9796.23892.1

>prot_P-canaliculata_contig9796.23892.1 ID=prot_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp
MMEIDKLAADLHRLGDKSKTKQRKCVIIVSGLSADFEMECRMLENNPDDL
NRAEIERVVGNQYNRFLRQQQDSKALSASRGTVTANRGKRKDRRPHYKFN
GKCFKCGKKGHRAGDCRS
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mRNA from alignment at P-canaliculata_contig9796:727..1080-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9796.23892.1 ID=mRNA_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at P-canaliculata_contig9796:727..1080- (Pelvetia canaliculata dioecious)
ATGATGGAAATTGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTGACAA
ATCCAAAACCAAACAGAGAAAGTGCGTGATCATTGTGTCTGGTCTGTCCG
CTGATTTTGAAATGGAGTGCCGAATGCTAGAGAATAACCCTGATGATCTT
AATAGGGCCGAGATTGAGCGAGTTGTAGGGAATCAGTACAACAGATTTCT
CAGGCAGCAACAGGACTCGAAGGCATTGTCGGCATCGAGGGGCACCGTCA
CGGCGAATCGCGGGAAGCGGAAGGACAGGAGACCCCACTATAAATTCAAT
GGTAAATGCTTCAAGTGCGGAAAGAAAGGTCACCGCGCTGGAGACTGCAG
GAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9796:727..1080-

>mRNA_P-canaliculata_contig9796.23892.1 ID=mRNA_P-canaliculata_contig9796.23892.1|Name=mRNA_P-canaliculata_contig9796.23892.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at P-canaliculata_contig9796:727..1080- (Pelvetia canaliculata dioecious)
ATGATGGAAATTGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTGACAA
ATCCAAAACCAAACAGAGAAAGTGCGTGATCATTGTGTCTGGTCTGTCCG
CTGATTTTGAAATGGAGTGCCGAATGCTAGAGAATAACCCTGATGATCTT
AATAGGGCCGAGATTGAGCGAGTTGTAGGGAATCAGTACAACAGATTTCT
CAGGCAGCAACAGGACTCGAAGGCATTGTCGGCATCGAGGGGCACCGTCA
CGGCGAATCGCGGGAAGCGGAAGGACAGGAGACCCCACTATAAATTCAAT
GGTAAATGCTTCAAGTGCGGAAAGAAAGGTCACCGCGCTGGAGACTGCAG
GAGCATGATGGAAATTGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTG
ACAAATCCAAAACCAAACAGAGAAAGTGCGTGATCATTGTGTCTGGTCTG
TCCGCTGATTTTGAAATGGAGTGCCGAATGCTAGAGAATAACCCTGATGA
TCTTAATAGGGCCGAGATTGAGCGAGTTGTAGGGAATCAGTACAACAGAT
TTCTCAGGCAGCAACAGGACTCGAAGGCATTGTCGGCATCGAGGGGCACC
GTCACGGCGAATCGCGGGAAGCGGAAGGACAGGAGACCCCACTATAAATT
CAATGGTAAATGCTTCAAGTGCGGAAAGAAAGGTCACCGCGCTGGAGACT
GCAGGAGC
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