mRNA_P-canaliculata_contig9794.23890.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9794.23890.1
Unique NamemRNA_P-canaliculata_contig9794.23890.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9794.23890.1 vs. uniprot
Match: D7FVQ4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.360e-22
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:    1 VSTKFADVTRSNKEGESAFEARLGDMEHQLRQAEKQASDAKTECERVRERAERKLAGKEAELNRLWERLSSKKEKFAAQKVALERESKALNKRLSEARLEEEGMR 315
            VS+ FA+   S KEGE++F+A+LGD+E  L + EKQ   ++ EC R++E A+R++  KEAEL  L ERLS KK+KFAAQK++LE+E K L  +LSE R+ EEG+R
Sbjct:  469 VSSNFAEAANSKKEGETSFDAKLGDLEKHLNKTEKQLLGSQAECVRIKEAAQREVKEKEAELESLRERLSRKKDKFAAQKLSLEQEIKTLTDKLSEGRVVEEGIR 573
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9794.23890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVQ4_ECTSI1.360e-2253.33Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9794contigP-canaliculata_contig9794:10536..11885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue8.4e-19
Seed eggNOG ortholog2880.D7FVQ4
KEGG koko:K10406
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size419
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9794.23890.1prot_P-canaliculata_contig9794.23890.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9794 10635..11885 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.5731082-UTR-P-canaliculata_contig9794:10535..106341622817341.5731082-UTR-P-canaliculata_contig9794:10535..10634Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9794 10536..10634 -
1693495234.4709363-UTR-P-canaliculata_contig9794:10535..106341693495234.4709363-UTR-P-canaliculata_contig9794:10535..10634Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9794 10536..10634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.587117-CDS-P-canaliculata_contig9794:10634..107401622817341.587117-CDS-P-canaliculata_contig9794:10634..10740Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9794 10635..10740 -
1693495234.4858594-CDS-P-canaliculata_contig9794:10634..107401693495234.4858594-CDS-P-canaliculata_contig9794:10634..10740Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9794 10635..10740 -
1622817341.5993488-CDS-P-canaliculata_contig9794:11139..112281622817341.5993488-CDS-P-canaliculata_contig9794:11139..11228Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9794 11140..11228 -
1693495234.496172-CDS-P-canaliculata_contig9794:11139..112281693495234.496172-CDS-P-canaliculata_contig9794:11139..11228Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9794 11140..11228 -
1622817341.6115754-CDS-P-canaliculata_contig9794:11762..118851622817341.6115754-CDS-P-canaliculata_contig9794:11762..11885Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9794 11763..11885 -
1693495234.506925-CDS-P-canaliculata_contig9794:11762..118851693495234.506925-CDS-P-canaliculata_contig9794:11762..11885Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9794 11763..11885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9794.23890.1

>prot_P-canaliculata_contig9794.23890.1 ID=prot_P-canaliculata_contig9794.23890.1|Name=mRNA_P-canaliculata_contig9794.23890.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=106bp
VSTKFADVTRSNKEGESAFEARLGDMEHQLRQAEKQASDAKTECERVRER
AERKLAGKEAELNRLWERLSSKKEKFAAQKVALERESKALNKRLSEARLE
EEGMR*
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mRNA from alignment at P-canaliculata_contig9794:10536..11885-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9794.23890.1 ID=mRNA_P-canaliculata_contig9794.23890.1|Name=mRNA_P-canaliculata_contig9794.23890.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at P-canaliculata_contig9794:10536..11885- (Pelvetia canaliculata dioecious)
GTTTCCACTAAATTCGCTGATGTTACCCGCAGCAACAAGGAAGGCGAGAG
CGCATTTGAAGCCAGGCTTGGCGACATGGAACACCAACTCCGCCAGGCTG
AGAAGCAAGCCTCGGATGCCAAAGTAAGAAATGAACGACATGTAGCTACA
CCGATATCGATGTGTTGCGACCGATAAAAGACCTAAGACTGGCATATCAA
CGGCAGGCGTTCGTTGCGACCGAGAGAATCTCCGTCTCTTTCCCTCACAT
CAGTATACCAGTATCTAAAGATCTACCTTCACGAAAACCTTAGCGAAACA
AATGAGACTTCCAAGTGCGCCCGGTCTGGTCTTGCTCAATGGCATACGAG
GCTCTGCAACTCGAGCAATCACCATTTTAATTATATACTTAAGATGGCCT
TGTGATGGTACCTGGTACAATATTGTTATAACAGTCGTGTAATATTCGCA
TACGTTTGGTATGTTAGTGGTATGATAACAATTTAATAGTGTGCTGGGAG
TTGTCGGGTTGCGCCCCGAGTAGCTCAATCCATACGCACACCACTGTAAC
ATTATTCATGATCATGACGGCATGCAATATACAATTATAGACTATAATAC
TGTAGTATGAAAGTCATCAACATCGATTATCAATATCAATATCTTCATTA
TTTCCAGACGGAGTGCGAACGTGTCAGGGAACGTGCGGAGCGCAAGCTGG
CGGGGAAGGAAGCAGAGCTCAACAGGTTATGGGAACGACTGTCAAGGTAA
ATCACGGTACTATATTAAAGCATTTCACCGCGAGATGTCAATATTTGGTG
CCTTGGAGTGTGGAAATTATCGCGAAAGGAATTTATTTCGCAACCGATAA
CTTGCTGGACCCATCGAGATAAACCTCCACCGAACTTCCAAACAGTGGTG
GTGCATAGTGTGGTGTATACTGTGGTGAAAAGTAATATTATGTCACGTCA
TGTACATTTCGGAGTGCTGCCGCTCACACTTTATATGCCGTATCACAATT
TGCGATTATTTGAGCACGCAGACAGTGCGTATCGCATCATGCTTTGATTT
GACCAAAAAATGCGAAAAAAACGATTGTGCCCGGAACGACAACCTCCAAG
CTATTTTCATGCAATCTTGTTGCAATCTTTATGTGTCCTGGTCAGTAAGA
AAGAAAAGTTCGCTGCTCAGAAAGTGGCGCTGGAGCGAGAGAGTAAGGCG
TTGAACAAAAGGCTCTCGGAGGCTCGACTTGAGGAGGAGGGCATGAGGTG
ATGCCGACAGCGTATTATGTAGCTAGCTCTTCCTGTCTCTAAATGGTACA
CTTCCGTAAATTTTGACATTTCACGTAATAGCCAACACTCGCATTCCCTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9794:10536..11885-

>mRNA_P-canaliculata_contig9794.23890.1 ID=mRNA_P-canaliculata_contig9794.23890.1|Name=mRNA_P-canaliculata_contig9794.23890.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at P-canaliculata_contig9794:10536..11885- (Pelvetia canaliculata dioecious)
GTTTCCACTAAATTCGCTGATGTTACCCGCAGCAACAAGGAAGGCGAGAG
CGCATTTGAAGCCAGGCTTGGCGACATGGAACACCAACTCCGCCAGGCTG
AGAAGCAAGCCTCGGATGCCAAAGTTTCCACTAAATTCGCTGATGTTACC
CGCAGCAACAAGGAAGGCGAGAGCGCATTTGAAGCCAGGCTTGGCGACAT
GGAACACCAACTCCGCCAGGCTGAGAAGCAAGCCTCGGATGCCAAAACGG
AGTGCGAACGTGTCAGGGAACGTGCGGAGCGCAAGCTGGCGGGGAAGGAA
GCAGAGCTCAACAGGTTATGGGAACGACTGTCAAGACGGAGTGCGAACGT
GTCAGGGAACGTGCGGAGCGCAAGCTGGCGGGGAAGGAAGCAGAGCTCAA
CAGGTTATGGGAACGACTGTCAAGTAAGAAAGAAAAGTTCGCTGCTCAGA
AAGTGGCGCTGGAGCGAGAGAGTAAGGCGTTGAACAAAAGGCTCTCGGAG
GCTCGACTTGAGGAGGAGGGCATGAGGTGATAAGAAAGAAAAGTTCGCTG
CTCAGAAAGTGGCGCTGGAGCGAGAGAGTAAGGCGTTGAACAAAAGGCTC
TCGGAGGCTCGACTTGAGGAGGAGGGCATGAGGTGA
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