mRNA_P-canaliculata_contig97915.23888.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97915.23888.1
Unique NamemRNA_P-canaliculata_contig97915.23888.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A518CVV2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CVV2_9BACT)

HSP 1 Score: 193 bits (491), Expect = 4.070e-54
Identity = 141/341 (41.35%), Postives = 181/341 (53.08%), Query Frame = 1 
Query:    1 ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALERRASVLAEMESVARAVLARAAGMTPDDPALE------QPGAELLLHLSEGPLPAEPTGEGEL-RHPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAETRALEIQGRS-GFTAAVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGPEAAR 999
            E  A FDLLG LG+GP+ + +  A A    + A   S  W +   V  ARL   A  AR + +  + ++AS+D  RI IL   G +G APA AA   V ++ER  S +A   +  RA LA AAG+ P+D A E      +P +E  L       P    G+G L  HP L E     ALREA VRS A ++WP +G+GPHL     G  D + +GG+ Q+TLP PSSWRG +   +E R A +E Y D L  L    R A  R  EI  R+ G T  V   +   W +ARA FRVGR+ +  WI AL R+  A T  IDD EALALA + L  A GP   R
Sbjct:  142 ELVATFDLLGLLGIGPARSERERAAAAVVVAAAELESEIWRSWLTVDAARLRFQAAAARERLLAEVLEQASADFDRIVILHERGWIGDAPAAAARAAVGSVERARSSVAADVAARRATLAHAAGVPPEDGAFEALLAPDRPASEPALR------PNAELGDGALFEHPRLRELRTRFALREAEVRSVATSAWPNVGIGPHL-----GYEDDLAIGGVLQLTLPFPSSWRGRLAGAVERRDAVIEAYEDELHLLLVEERSARERRDEIHRRTTGATRLVVEGSTAGWSAARASFRVGRMPVLEWIDALYRRLGATTAEIDDAEALALAQVALAGARGPAGTR 471
[Close]
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A518EUV2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EUV2_9BACT)

HSP 1 Score: 167 bits (422), Expect = 5.640e-44
Identity = 128/345 (37.10%), Postives = 179/345 (51.88%), Query Frame = 1 
Query:    1 ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALERRASVLAEMESVARAVLARAAGMTPD----DPALEQPGAELLLHLSEG----PLPAEPTGEGEL--RHPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAETRALEIQGR----SGFTAAVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGPEA 993
            E+  +FDL+G LGLGPS A +  A A    +      VA+++   V +AR+ + A R R Q +  L + A++DL R+ IL+   R+  A A  A   VA LERR  + A     AR  LAR +G  PD     P ++  G   L  ++ G    P P        L   HP+L +A L  A+REA VR AAA +WPG+G+GPHL     G  +  ++G + + ++P PSSW+G +E+ +E R  A+E + + LV    R  +A+ R   +Q       G T      A   W +AR  FR GR     W QAL   G  +  PIDD+EALALA LD+  A GP A
Sbjct:  137 EAIGVFDLIGLLGLGPSRAERERASAETLLAAGRLEHVAFESWIAVERARIGVVATRLRWQRLAELIETATADLERVRILEENDRLSDADAGLARAEVARLERRQLLAAAALETARMELARLSGSVPDAGHFGPDVQAVGEAGLAEVAYGNVMDPWPPMENAPAFLADHHPALRQARLRFAVREAEVREAAARAWPGVGLGPHL-----GYLNHAQLGMIARFSIPFPSSWKGRLEAAVERRDRALEEFEETLVAFSGRLVEAKARLGSLQAAVDDDHGATRRATDPAIQHWEAARTRFRAGRGSAAGWTQALNHVGETLNWPIDDVEALALARLDVTAATGPGA 476
[Close]
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A2D5XR75_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XR75_9BACT)

HSP 1 Score: 163 bits (412), Expect = 9.920e-43
Identity = 129/335 (38.51%), Postives = 184/335 (54.93%), Query Frame = 1 
Query:    1 ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALE----RRASVLAEMESVARAVLARAAGMTPDDPALEQPGAELLLHLSEGPLPAEPTGEGELR-HPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAETRALEIQGRSGFTA-AVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGP 987
            ES A FDLLG LG+G SAA + +A      +        W AR  V +AR+ LAA+RAR++ + VL  E   D+ R  ILQ   R+      A  G+++A E    ++ S+LA  E+  R  LA AAG+  D PAL++P  + L  L  GP    P+    L  HP L    L+VA  EA++R+ AA++ PGI +GPHLS P  G +    +GG  Q+TLPLPS WRG +E+ L  R A ++   D L+   S AR A+ R  E + R    A AV +AA ++W + R  FRVG+     W++AL+ Q  A+ + ++      +A LD+   AGP
Sbjct:  138 ESVATFDLLGILGVGESAAEQAQADVRVLRARCRLEQELWSARFVVERARVRLAAVRARQELLRVLGTELREDMERFRILQLNRRLS----DAEWGLISAREDLLLQKLSLLASEEAALRHELAVAAGLPIDHPALDRPAIDALTDL--GPTVELPSSARLLETHPRLRYLRLDVAEAEAQLRTIAASAIPGIRMGPHLSWPGSGTQ----LGGALQLTLPLPSQWRGEIEAALIERTARIQQLEDELLSHGSLARTAQLRCEEARVRQEEHAVAVQNAASESWRATRLRFRVGQATSRDWLRALDAQMLAVVLGVNSTATEHIATLDVLELAGP 462
[Close]
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Match: A0A2E6DAK5_9BACT (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2E6DAK5_9BACT)

HSP 1 Score: 106 bits (264), Expect = 5.190e-22
Identity = 99/328 (30.18%), Postives = 157/328 (47.87%), Query Frame = 1 
Query:   34 LGLGPSAAAK-------LEAGAGEAASLASFASVAWDARTQVAKARLALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAALERRASVLAEMESVARAVLARAAGMTPDDPALEQPGAELLLHLSEGPLPAEPTGEGEL--RHPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGGLRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRARDAE-TRALEIQGRSGFTAAVHHAAEDAWISARAGFRVGRVDLNLWIQALERQGNAITMPIDDLEALALAALDLEWAAGP 987
            LGLGP+ A +       L+A +G  A+L       W    +V ++R++LAA RAR  A+  L  +  +D  R+EIL   GR+  A          +L    S L   E+ A A+L+  +G+    P+L  P    +L    G      T  G L  RHP L    + +A+ E ++R  AA +WP + +GPH+SL    + D   +GGL Q+ LP PSSWRG +E+    RA  +E   +A ++  +R   +  + A  +  R   + A+   A   W ++RA    G   ++ W    + + ++  + ID  E   LA +DL+   GP
Sbjct:  117 LGLGPAEAERELARTEVLQATSGLEAAL-------WSTCFKVERSRVSLAAARARYTALEQLQSDLQTDRVRLEILHAHGRLTAAAWEGVEARTHSLAAAVSRLRVQEAKAEALLSGVSGVPMGHPSLAVPVQAQILSADLGT-----TDAGGLLDRHPLLRRERITLAVAEVQLRRVAAKAWPEVRIGPHVSL----ITDAPTLGGLVQLQLPWPSSWRGELEATEARRARQLERIEEAYLEQLARIEQSRASHADALVQRDLHSPAMERGAAAMWGASRARLHEGEEPMSRWFDFFDNRLDSSHLVIDAWEQEQLARIDLQDHLGP 428
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97915.23888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518CVV2_9BACT4.070e-5441.35Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518EUV2_9BACT5.640e-4437.10Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5XR75_9BACT9.920e-4338.51Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E6DAK5_9BACT5.190e-2230.18Uncharacterized protein n=3 Tax=cellular organisms... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97915contigP-canaliculata_contig97915:70..1071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1002
Cds size1002
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.4998693-CDS-P-canaliculata_contig97915:69..10711622817341.4998693-CDS-P-canaliculata_contig97915:69..1071Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97915 70..1071 -
1693495234.4477384-CDS-P-canaliculata_contig97915:69..10711693495234.4477384-CDS-P-canaliculata_contig97915:69..1071Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97915 70..1071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97915.23888.1prot_P-canaliculata_contig97915.23888.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97915 70..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97915.23888.1

>prot_P-canaliculata_contig97915.23888.1 ID=prot_P-canaliculata_contig97915.23888.1|Name=mRNA_P-canaliculata_contig97915.23888.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=334bp
ESAALFDLLGHLGLGPSAAAKLEAGAGEAASLASFASVAWDARTQVAKAR
LALAAIRARRQAVLVLADEASSDLGRIEILQRTGRVGLAPARAAHGMVAA
LERRASVLAEMESVARAVLARAAGMTPDDPALEQPGAELLLHLSEGPLPA
EPTGEGELRHPSLTEAHLEVALREARVRSAAAASWPGIGVGPHLSLPSGG
LRDTIRVGGLFQVTLPLPSSWRGIMESRLELRAAAVEGYVDALVDLRSRA
RDAETRALEIQGRSGFTAAVHHAAEDAWISARAGFRVGRVDLNLWIQALE
RQGNAITMPIDDLEALALAALDLEWAAGPEAAR*
back to top

mRNA from alignment at P-canaliculata_contig97915:70..1071-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97915.23888.1 ID=mRNA_P-canaliculata_contig97915.23888.1|Name=mRNA_P-canaliculata_contig97915.23888.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-canaliculata_contig97915:70..1071- (Pelvetia canaliculata dioecious)
GAGTCGGCGGCACTCTTCGACCTCCTCGGTCACCTTGGCCTCGGTCCCTC
CGCCGCGGCCAAGCTCGAGGCGGGCGCGGGCGAGGCTGCTTCGCTCGCGA
GCTTCGCCAGCGTGGCGTGGGACGCCCGCACCCAGGTGGCCAAGGCGCGG
CTCGCGCTCGCCGCCATTCGGGCTCGCCGCCAAGCCGTTCTGGTCCTCGC
CGACGAGGCATCTTCCGACCTCGGCCGCATCGAGATTCTGCAACGCACCG
GCCGCGTCGGCCTGGCGCCCGCACGCGCCGCCCATGGCATGGTCGCCGCA
CTGGAGAGGCGCGCGTCTGTTCTGGCGGAGATGGAGTCGGTCGCCCGCGC
CGTCCTGGCGCGCGCCGCCGGCATGACCCCAGACGATCCAGCCCTGGAAC
AGCCCGGCGCGGAGCTTCTGCTGCACCTCAGCGAAGGCCCCCTGCCCGCG
GAGCCGACGGGCGAAGGCGAGCTTAGGCACCCAAGCCTGACCGAGGCGCA
CCTCGAGGTGGCGCTGCGCGAAGCGCGCGTTCGAAGCGCCGCCGCGGCTT
CCTGGCCGGGCATCGGCGTCGGACCACACCTCAGCCTGCCATCCGGCGGG
CTCCGCGATACCATCCGAGTCGGCGGCCTCTTCCAAGTGACACTTCCCCT
ACCCTCTAGCTGGCGAGGAATCATGGAGAGCCGCCTCGAGCTGCGCGCCG
CCGCGGTCGAGGGCTACGTCGATGCCCTTGTGGACCTTCGCAGCCGCGCA
CGGGACGCGGAGACCCGGGCCTTGGAGATCCAAGGGCGATCGGGCTTCAC
CGCCGCCGTGCATCATGCGGCGGAGGATGCATGGATCTCGGCCCGCGCGG
GATTCCGCGTGGGACGCGTCGACCTGAACCTTTGGATACAGGCCCTCGAG
CGCCAAGGCAACGCCATCACGATGCCCATCGACGATCTCGAAGCGCTCGC
GCTCGCGGCCCTCGACCTCGAATGGGCCGCTGGACCGGAGGCGGCCCGAT
GA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig97915:70..1071-

>mRNA_P-canaliculata_contig97915.23888.1 ID=mRNA_P-canaliculata_contig97915.23888.1|Name=mRNA_P-canaliculata_contig97915.23888.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2004bp|location=Sequence derived from alignment at P-canaliculata_contig97915:70..1071- (Pelvetia canaliculata dioecious)
GAGTCGGCGGCACTCTTCGACCTCCTCGGTCACCTTGGCCTCGGTCCCTC
CGCCGCGGCCAAGCTCGAGGCGGGCGCGGGCGAGGCTGCTTCGCTCGCGA
GCTTCGCCAGCGTGGCGTGGGACGCCCGCACCCAGGTGGCCAAGGCGCGG
CTCGCGCTCGCCGCCATTCGGGCTCGCCGCCAAGCCGTTCTGGTCCTCGC
CGACGAGGCATCTTCCGACCTCGGCCGCATCGAGATTCTGCAACGCACCG
GCCGCGTCGGCCTGGCGCCCGCACGCGCCGCCCATGGCATGGTCGCCGCA
CTGGAGAGGCGCGCGTCTGTTCTGGCGGAGATGGAGTCGGTCGCCCGCGC
CGTCCTGGCGCGCGCCGCCGGCATGACCCCAGACGATCCAGCCCTGGAAC
AGCCCGGCGCGGAGCTTCTGCTGCACCTCAGCGAAGGCCCCCTGCCCGCG
GAGCCGACGGGCGAAGGCGAGCTTAGGCACCCAAGCCTGACCGAGGCGCA
CCTCGAGGTGGCGCTGCGCGAAGCGCGCGTTCGAAGCGCCGCCGCGGCTT
CCTGGCCGGGCATCGGCGTCGGACCACACCTCAGCCTGCCATCCGGCGGG
CTCCGCGATACCATCCGAGTCGGCGGCCTCTTCCAAGTGACACTTCCCCT
ACCCTCTAGCTGGCGAGGAATCATGGAGAGCCGCCTCGAGCTGCGCGCCG
CCGCGGTCGAGGGCTACGTCGATGCCCTTGTGGACCTTCGCAGCCGCGCA
CGGGACGCGGAGACCCGGGCCTTGGAGATCCAAGGGCGATCGGGCTTCAC
CGCCGCCGTGCATCATGCGGCGGAGGATGCATGGATCTCGGCCCGCGCGG
GATTCCGCGTGGGACGCGTCGACCTGAACCTTTGGATACAGGCCCTCGAG
CGCCAAGGCAACGCCATCACGATGCCCATCGACGATCTCGAAGCGCTCGC
GCTCGCGGCCCTCGACCTCGAATGGGCCGCTGGACCGGAGGCGGCCCGAT
GAGAGTCGGCGGCACTCTTCGACCTCCTCGGTCACCTTGGCCTCGGTCCC
TCCGCCGCGGCCAAGCTCGAGGCGGGCGCGGGCGAGGCTGCTTCGCTCGC
GAGCTTCGCCAGCGTGGCGTGGGACGCCCGCACCCAGGTGGCCAAGGCGC
GGCTCGCGCTCGCCGCCATTCGGGCTCGCCGCCAAGCCGTTCTGGTCCTC
GCCGACGAGGCATCTTCCGACCTCGGCCGCATCGAGATTCTGCAACGCAC
CGGCCGCGTCGGCCTGGCGCCCGCACGCGCCGCCCATGGCATGGTCGCCG
CACTGGAGAGGCGCGCGTCTGTTCTGGCGGAGATGGAGTCGGTCGCCCGC
GCCGTCCTGGCGCGCGCCGCCGGCATGACCCCAGACGATCCAGCCCTGGA
ACAGCCCGGCGCGGAGCTTCTGCTGCACCTCAGCGAAGGCCCCCTGCCCG
CGGAGCCGACGGGCGAAGGCGAGCTTAGGCACCCAAGCCTGACCGAGGCG
CACCTCGAGGTGGCGCTGCGCGAAGCGCGCGTTCGAAGCGCCGCCGCGGC
TTCCTGGCCGGGCATCGGCGTCGGACCACACCTCAGCCTGCCATCCGGCG
GGCTCCGCGATACCATCCGAGTCGGCGGCCTCTTCCAAGTGACACTTCCC
CTACCCTCTAGCTGGCGAGGAATCATGGAGAGCCGCCTCGAGCTGCGCGC
CGCCGCGGTCGAGGGCTACGTCGATGCCCTTGTGGACCTTCGCAGCCGCG
CACGGGACGCGGAGACCCGGGCCTTGGAGATCCAAGGGCGATCGGGCTTC
ACCGCCGCCGTGCATCATGCGGCGGAGGATGCATGGATCTCGGCCCGCGC
GGGATTCCGCGTGGGACGCGTCGACCTGAACCTTTGGATACAGGCCCTCG
AGCGCCAAGGCAACGCCATCACGATGCCCATCGACGATCTCGAAGCGCTC
GCGCTCGCGGCCCTCGACCTCGAATGGGCCGCTGGACCGGAGGCGGCCCG
ATGA
back to top