prot_P-canaliculata_contig9790.23887.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9790.23887.1
Unique Nameprot_P-canaliculata_contig9790.23887.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length398
Homology
BLAST of mRNA_P-canaliculata_contig9790.23887.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 3.570e-118
Identity = 205/391 (52.43%), Postives = 272/391 (69.57%), Query Frame = 0
Query:    2 TLMAREAAKVLPLLGCILFGCALALHVLYGEGSSLLEGTDFVSPLTGGSEYVDGFRTFGASCGTVLGAGLGVIRPPLDEDVPYGEPLYIILYLFGVAVALGMVSILAGVLANSESADPVKMDQEFHLEKARAIVRATETCRKNGLPAPLNIAQWFLSMIVSVVRPARSTSSKRRAAKEACLIQGRLVFWILMGLPSVAAVIALDLVSLGCFWWSSWRRVFEAPQNLPRVSLSLLGTSLWCILGSPLRLLFAWLTAARLVVRGNREGRLSGEAVRRTVLKGRAGGDYDLARLLKRTRWGGGSGRSVSERGCSVADIVAIIDDPLSRGSRFKEALCC-DDDMPSTLGQIKALAKRNQENQGRTVERLKSLEGSLLVALARIESGMERGGRGQQ 391
            +L+AREA+KVLP L C+L G ALALHV+YG+GS LLEGT+    L GGS  VDGFRTFG SC TV  AG G I+  LDEDVPYGEPLY++LY+F  A ALG+VSIL GVL+N + A PV+M++ F L +AR IVRA E  R+N LP P N+AQ  L+++VS  +  R  S +R+A   AC + GR VFW+++G  ++A+ + L+L +L CFWW S +R+FE P+  PR+   LL T+L C + +PLRLL  W+ A   V++G++ G+ +  AVR+ VLKGR GGDY L+ LL+RTRWG G G S   +G SV DI A +DDPL RG  F+    C  D+ PST+ Q+KALAKRN EN+ R  +RLK LE ++L  LAR+++  E   + QQ
Sbjct:  609 SLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTE----LPGGS--VDGFRTFGVSCRTVARAGFGDIQV-LDEDVPYGEPLYVLLYVFAAAGALGLVSILVGVLSNLKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLLCTTLCCGVCAPLRLLGWWVAAVSCVLKGDKVGQRARTAVRKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIAAAMDDPLQRGGPFRNVSSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQ 992          
BLAST of mRNA_P-canaliculata_contig9790.23887.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 370 bits (949), Expect = 3.700e-112
Identity = 201/391 (51.41%), Postives = 269/391 (68.80%), Query Frame = 0
Query:    2 TLMAREAAKVLPLLGCILFGCALALHVLYGEGSSLLEGTDFVSPLTGGSEYVDGFRTFGASCGTVLGAGLGVIRPPLDEDVPYGEPLYIILYLFGVAVALGMVSILAGVLANSESADPVKMDQEFHLEKARAIVRATETCRKNGLPAPLNIAQWFLSMIVSVVRPARSTSSKRRAAKEACLIQGRLVFWILMGLPSVAAVIALDLVSLGCFWWSSWRRVFEAPQNLPRVSLSLLGTSLWCILGSPLRLLFAWLTAARLVVRGNREGRLSGEAVRRTVLKGRAGGDYDLARLLKRTRWGGGSGRSVSERGCSVADIVAIIDDPLSRGSRFKEALCC-DDDMPSTLGQIKALAKRNQENQGRTVERLKSLEGSLLVALARIESGMERGGRGQQ 391
            +L+AREA+KVLP L C+L G ALALHV+YG+GS LLEGT+    L+GG  +VDGFRTFG SC TV  AG G I+ P DEDVPYGEPLY++LY+F  A AL +VSI  GVL+N + A PV+M++ F L +AR IVRA E  R+N LP P N+AQ  L+++VS  +  R  S +R+A   AC + GR VFW+++G  +VA+ + L+L +L  FWW S +R+FE P+  PR+   LL T+L C + +PLRLL  W+ A   V++G++ G+ +    R+ VLKGR GGDY L+ LL+RTRWG G G S   +G SV DIVA +DDPL RG  F+    C  D+ PST+ Q+KALAKRN EN+ R  +RLK LE ++L  LAR+++  E   + QQ
Sbjct: 1315 SLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTE----LSGG--FVDGFRTFGVSCRTVARAGFGDIQVP-DEDVPYGEPLYVLLYVFAAAGALALVSIYVGVLSNVKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLAVASAMLLNLAALFYFWWFSVKRLFEDPRRAPRMLYVLLRTTLRCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQ 1698          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9790.23887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN03_ECTSI3.570e-11852.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4C8_9PHAE3.700e-11251.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..167
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 113..151
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 168..186
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 235..261
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..54
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..76
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..112
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 216..234
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 262..397
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..87
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 187..215
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 5.0
NoneNo IPR availableTMHMMTMhelixcoord: 12..31
NoneNo IPR availableTMHMMTMhelixcoord: 230..252
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 188..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9790contigP-canaliculata_contig9790:5446..11364 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9790.23887.1mRNA_P-canaliculata_contig9790.23887.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9790 1343..11373 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9790.23887.1 ID=prot_P-canaliculata_contig9790.23887.1|Name=mRNA_P-canaliculata_contig9790.23887.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=398bp
MTLMAREAAKVLPLLGCILFGCALALHVLYGEGSSLLEGTDFVSPLTGGS
EYVDGFRTFGASCGTVLGAGLGVIRPPLDEDVPYGEPLYIILYLFGVAVA
LGMVSILAGVLANSESADPVKMDQEFHLEKARAIVRATETCRKNGLPAPL
NIAQWFLSMIVSVVRPARSTSSKRRAAKEACLIQGRLVFWILMGLPSVAA
VIALDLVSLGCFWWSSWRRVFEAPQNLPRVSLSLLGTSLWCILGSPLRLL
FAWLTAARLVVRGNREGRLSGEAVRRTVLKGRAGGDYDLARLLKRTRWGG
GSGRSVSERGCSVADIVAIIDDPLSRGSRFKEALCCDDDMPSTLGQIKAL
AKRNQENQGRTVERLKSLEGSLLVALARIESGMERGGRGQQHRPSDH*
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