mRNA_P-canaliculata_contig9790.23887.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig9790.23887.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI) HSP 1 Score: 380 bits (975), Expect = 5.090e-108 Identity = 207/395 (52.41%), Postives = 276/395 (69.87%), Query Frame = 1 Query: 1 IKAMTLMAREAAKVLPLLGCILFGCALALHVLYGEGSSLLEGTDFVSPLTGGSEYVDGFRTFGASCGTVLGAGLGVIRPPLDEDVPYGEPLYIILYLFGVAVALGMVSILAGVLANSESADPVKMDQEFHLEKARAIVRATETCRKNGLPAPLNIAQWFLSMIVSVVRPARSTSSKRRAAKEACLIQGRLVFWILMGLPSVAAVIALDLVSLGCFWWSSWRRVFEAPQNLPRVSLSLLGTSLWCILGSPLRLLFAWLTAARLVVRGNREGRLSGEAVRRTVLKGRAGGDYDLARLLKRTRWGGGSGRSVSERGCSVADIVAIIDDPLSRGSRFKEALCC-DDDMPSTLGQIKALAKRNQENQGRTVERLKSLEGSLLVALARIESGMERGGRGQQ 1182 +KA++L+AREA+KVLP L C+L G ALALHV+YG+GS LLEGT+ L GGS VDGFRTFG SC TV AG G I+ LDEDVPYGEPLY++LY+F A ALG+VSIL GVL+N + A PV+M++ F L +AR IVRA E R+N LP P N+AQ L+++VS + R S +R+A AC + GR VFW+++G ++A+ + L+L +L CFWW S +R+FE P+ PR+ LL T+L C + +PLRLL W+ A V++G++ G+ + AVR+ VLKGR GGDY L+ LL+RTRWG G G S +G SV DI A +DDPL RG F+ C D+ PST+ Q+KALAKRN EN+ R +RLK LE ++L LAR+++ E + QQ Sbjct: 605 VKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTE----LPGGS--VDGFRTFGVSCRTVARAGFGDIQV-LDEDVPYGEPLYVLLYVFAAAGALGLVSILVGVLSNLKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLLCTTLCCGVCAPLRLLGWWVAAVSCVLKGDKVGQRARTAVRKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIAAAMDDPLQRGGPFRNVSSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQ 992
BLAST of mRNA_P-canaliculata_contig9790.23887.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE) HSP 1 Score: 374 bits (959), Expect = 4.750e-102 Identity = 203/395 (51.39%), Postives = 273/395 (69.11%), Query Frame = 1 Query: 1 IKAMTLMAREAAKVLPLLGCILFGCALALHVLYGEGSSLLEGTDFVSPLTGGSEYVDGFRTFGASCGTVLGAGLGVIRPPLDEDVPYGEPLYIILYLFGVAVALGMVSILAGVLANSESADPVKMDQEFHLEKARAIVRATETCRKNGLPAPLNIAQWFLSMIVSVVRPARSTSSKRRAAKEACLIQGRLVFWILMGLPSVAAVIALDLVSLGCFWWSSWRRVFEAPQNLPRVSLSLLGTSLWCILGSPLRLLFAWLTAARLVVRGNREGRLSGEAVRRTVLKGRAGGDYDLARLLKRTRWGGGSGRSVSERGCSVADIVAIIDDPLSRGSRFKEALCC-DDDMPSTLGQIKALAKRNQENQGRTVERLKSLEGSLLVALARIESGMERGGRGQQ 1182 +KA++L+AREA+KVLP L C+L G ALALHV+YG+GS LLEGT+ L+GG +VDGFRTFG SC TV AG G I+ P DEDVPYGEPLY++LY+F A AL +VSI GVL+N + A PV+M++ F L +AR IVRA E R+N LP P N+AQ L+++VS + R S +R+A AC + GR VFW+++G +VA+ + L+L +L FWW S +R+FE P+ PR+ LL T+L C + +PLRLL W+ A V++G++ G+ + R+ VLKGR GGDY L+ LL+RTRWG G G S +G SV DIVA +DDPL RG F+ C D+ PST+ Q+KALAKRN EN+ R +RLK LE ++L LAR+++ E + QQ Sbjct: 1311 VKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTE----LSGG--FVDGFRTFGVSCRTVARAGFGDIQVP-DEDVPYGEPLYVLLYVFAAAGALALVSIYVGVLSNVKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLAVASAMLLNLAALFYFWWFSVKRLFEDPRRAPRMLYVLLRTTLRCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQ 1698 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9790.23887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9790.23887.1 >prot_P-canaliculata_contig9790.23887.1 ID=prot_P-canaliculata_contig9790.23887.1|Name=mRNA_P-canaliculata_contig9790.23887.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=398bp MTLMAREAAKVLPLLGCILFGCALALHVLYGEGSSLLEGTDFVSPLTGGSback to top mRNA from alignment at P-canaliculata_contig9790:1343..11373- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9790.23887.1 ID=mRNA_P-canaliculata_contig9790.23887.1|Name=mRNA_P-canaliculata_contig9790.23887.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=10031bp|location=Sequence derived from alignment at P-canaliculata_contig9790:1343..11373- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9790:1343..11373- >mRNA_P-canaliculata_contig9790.23887.1 ID=mRNA_P-canaliculata_contig9790.23887.1|Name=mRNA_P-canaliculata_contig9790.23887.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2388bp|location=Sequence derived from alignment at P-canaliculata_contig9790:1343..11373- (Pelvetia canaliculata dioecious)back to top |