mRNA_P-canaliculata_contig97728.23873.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97728.23873.1
Unique NamemRNA_P-canaliculata_contig97728.23873.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97728.23873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97728contigP-canaliculata_contig97728:61..396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.2063715-CDS-P-canaliculata_contig97728:60..3961622817340.2063715-CDS-P-canaliculata_contig97728:60..396Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97728 61..396 -
1693495233.6155145-CDS-P-canaliculata_contig97728:60..3961693495233.6155145-CDS-P-canaliculata_contig97728:60..396Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97728 61..396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97728.23873.1prot_P-canaliculata_contig97728.23873.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97728 61..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97728.23873.1

>prot_P-canaliculata_contig97728.23873.1 ID=prot_P-canaliculata_contig97728.23873.1|Name=mRNA_P-canaliculata_contig97728.23873.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=112bp
LQAAAPTVLKAPPPLPAHPTDGQPGAGVPGRFAGARSRWAGMNGALSTID
HGKLRHLISVAGNRFPVIRSEEIEIPGYEGQPVVRWIFGDTEVYFGFHPA
DETAFWHALGSY
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mRNA from alignment at P-canaliculata_contig97728:61..396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97728.23873.1 ID=mRNA_P-canaliculata_contig97728.23873.1|Name=mRNA_P-canaliculata_contig97728.23873.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at P-canaliculata_contig97728:61..396- (Pelvetia canaliculata dioecious)
CTACAGGCCGCCGCTCCCACCGTGCTCAAAGCGCCTCCGCCACTCCCGGC
ACATCCCACCGATGGGCAGCCCGGGGCTGGGGTTCCAGGGCGGTTTGCCG
GAGCCCGCAGCCGCTGGGCGGGCATGAATGGCGCCCTCTCGACGATCGAC
CACGGTAAGTTGCGCCACCTCATCTCCGTTGCGGGAAACCGCTTTCCTGT
GATCCGTTCCGAAGAGATAGAAATTCCAGGATACGAGGGGCAGCCAGTCG
TCCGCTGGATCTTCGGCGATACAGAAGTCTATTTCGGTTTCCATCCTGCG
GATGAAACCGCTTTCTGGCACGCTCTCGGCAGCTAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig97728:61..396-

>mRNA_P-canaliculata_contig97728.23873.1 ID=mRNA_P-canaliculata_contig97728.23873.1|Name=mRNA_P-canaliculata_contig97728.23873.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at P-canaliculata_contig97728:61..396- (Pelvetia canaliculata dioecious)
CTACAGGCCGCCGCTCCCACCGTGCTCAAAGCGCCTCCGCCACTCCCGGC
ACATCCCACCGATGGGCAGCCCGGGGCTGGGGTTCCAGGGCGGTTTGCCG
GAGCCCGCAGCCGCTGGGCGGGCATGAATGGCGCCCTCTCGACGATCGAC
CACGGTAAGTTGCGCCACCTCATCTCCGTTGCGGGAAACCGCTTTCCTGT
GATCCGTTCCGAAGAGATAGAAATTCCAGGATACGAGGGGCAGCCAGTCG
TCCGCTGGATCTTCGGCGATACAGAAGTCTATTTCGGTTTCCATCCTGCG
GATGAAACCGCTTTCTGGCACGCTCTCGGCAGCTATCTACAGGCCGCCGC
TCCCACCGTGCTCAAAGCGCCTCCGCCACTCCCGGCACATCCCACCGATG
GGCAGCCCGGGGCTGGGGTTCCAGGGCGGTTTGCCGGAGCCCGCAGCCGC
TGGGCGGGCATGAATGGCGCCCTCTCGACGATCGACCACGGTAAGTTGCG
CCACCTCATCTCCGTTGCGGGAAACCGCTTTCCTGTGATCCGTTCCGAAG
AGATAGAAATTCCAGGATACGAGGGGCAGCCAGTCGTCCGCTGGATCTTC
GGCGATACAGAAGTCTATTTCGGTTTCCATCCTGCGGATGAAACCGCTTT
CTGGCACGCTCTCGGCAGCTAT
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