mRNA_P-canaliculata_contig9768.23870.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9768.23870.1
Unique NamemRNA_P-canaliculata_contig9768.23870.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.570e-38
Identity = 116/394 (29.44%), Postives = 156/394 (39.59%), Query Frame = 3 
Query:  324 TCSNGFSGIESSGGDVCCAVECGRCGGSGCSD--LTGGEDN--CCVGKIYDNGGLCTTEGAAPCIIYDDTDEEEASEVATGTXXXXXXXXXXXXXXPMSYYAGYVVGTSYIGCFEET---GSDPFSYRVEITGMTPELCYAECTTKDALYMGLMGSNECACGEDEDYLDSDKTSGTCDSVCEGDDSICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGEIDGYAYKKCYDFDGEEPFDAVVGDEGMTPEMCYEICTMVSARYFGVYAGKECGCGSNSDYIVF------GGTPGTCDMSCAGDSDYSCGGTEAYDMYQLVDNNIGLDDDSPEGGLLECSNGLAGVESSDGSVCCAAACGSCDGSRCVGTGGCCAEYIKAKYDTCSEKQSAPCVMD 1466
            TCSNG  GIES+ GDVCC   CG CGG  C++  +  G D+  CC G I  +G  C+    APCII DD  +E A +  + T                    G   G   + C  E    G    +      G+    C     TK+ +     G+  C   + ED   S         V      I  G    G Y                                    E+PF        +T E CYE+C   S+ YFG+  G  C CG    ++          T  TC  +C G  D +CGG +A+D+YQ+               L  C+ G+ GVE++ G VCC  +CG C G RCVG GGCC   I+++ D C    +APCV +
Sbjct:   51 TCSNGIEGIESANGDVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGDIIVSGASCSENQMAPCII-DDASQESAGDTCSNTDGVE----------------GISSGDGDVCCPSECVLCGGRDCTEAALAAGLADGDCCVSDITKEGVKCSDSGAAPCVAYDSEDETGSPLVQEASTPVY-----IALGCGKIGDY------------------------------------EDPFTVSSTVSDLTAEACYELCASESSLYFGLVEGNVCSCGDEETFVETFLDTYDEQTAATCSTACPGSPDETCGGAQAFDLYQI---------------LPTCTGGIVGVEAASGDVCCPFSCGECGGDRCVGEGGCCEHTIQSREDLCEYTNAAPCVFN 371
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.680e-31
Identity = 137/429 (31.93%), Postives = 185/429 (43.12%), Query Frame = 3 
Query:   45 ETCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGS----------SPSTTTXXXXXXXXXXXXXXXXXTCSN--GFSGIESSGGDVCCAVECGRCGGSGCSDLTGGEDNCCVGKIYDNGGLCTTEGAAPCIIYDDTDEEEASEVATGTXXXXXXXXXXXXXXPMSYYAGYVVGTSYIGCFEETGSDPFSYRVEITGMTPELCYAE---CTTKDALYMGLM--GSNECACGEDED------YLDSDKTSGTCDSVCEGDDSICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGEIDGYAYKKCYDFD--GEEPFDAVVGDEGMTPEMCYEICTMVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSDYSCGGTEAYDMYQLVDNNIG 1256
            + C + + GI+    +G+ CC A+C  CGG GC+      L A +CC+S I D G  C  T   PCI+ S           P+   XXXXXXXXXXXXXXXX TC N  G  G+ES G   CC   C  CGG GCS   G   +CCV  I   G  C   G APC I D     EA                     P +     +      G   E+ S  +           + CY +   C   D    G++   S E  C  D D      Y  +   +GT     + D +I GG D          S D       D+D +G +D Y +  CY          + + G+E MT  +C+E C   SA YF ++ G  C CG+   Y+      G CD  C+GD   +CGG   YD+Y+L+++++G
Sbjct: 2882 DVCSNGIPGIQ----TGNACCLAECGGCGGTGCAQLGGG-LGADNCCMSEIEDFGELCSATMTAPCIVDSVSGPAPSPVAMPTAXXXXXXXXXXXXXXXXXXSTCPNAGGIPGVESPGSSACCPTSCVSCGGVGCSSR-GEVTDCCVSAIMTKGQACEVSGTAPCYIGDGG---EAPAPTPEPVRPTPVTMEPTTEPPAAPTTQGLCSNGVPGI--ESASGDYCCPATCRACDGDNCYLDGLFCCGDDIEETGVLCDDSEEAPCIIDIDGGGFGTYAPTGAPTGT---PFDFDPTISGGNDD---------SMD------VDIDGDGNVDSYEHVGCYALSPTASVELEKLDGEEQMTKMLCFEACAAESADYFALFKGSVCTCGNEGGYLTMPMEMGICDTPCSGDVTATCGGYYDYDLYELMESDVG 3281
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.030e-22
Identity = 65/162 (40.12%), Postives = 85/162 (52.47%), Query Frame = 3 
Query:   45 ETCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTE-LDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCS------DLTGGEDNCCVGKIYDNGGLCTTEGAAPCII 509
            +T +D   GI   DG+G VCC   C  CGG+GCS   S   L +  CC   ++  G+YCDDT+E PCIIGS+P T                   TCSNG  GI+  G +VCC + CG+CGG+GC       +L G  ++CC  ++      C    AAPCII
Sbjct:  571 DTQIDGTEGI---DGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDDVDSGISEESADDTQ---TCSNGIEGIDHKG-EVCCPLACGQCGGTGCGSAGSAFELDG--ESCCSSQVLAGNVYCEDTNAAPCII 723
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.090e-22
Identity = 63/166 (37.95%), Postives = 82/166 (49.40%), Query Frame = 3 
Query:   51 CVDNVSGIRSSDGSGDVCCNAKCPACGGEGCS-YPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTG----GEDNCCVGKIYDNGGLCTTEGAAPCIIYDDTDEEE 533
            C D + GI   DG+G VCC  +C  C G GC+ + +   L +  CC   ++DAG YCD T E PCI GS P                      CS G  GI+ +G  VCC +ECG+CGG+GCS        G ++CC   +  +G  C   G APCI Y   D+ E
Sbjct:   48 CNDGIEGI---DGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGSPPE-------------------GECSGGIEGIDGNG-VVCCPLECGQCGGTGCSSAGAASGLGSESCCESGVDSSGRYCDVTGEAPCI-YGSPDDGE 189
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.150e-21
Identity = 68/179 (37.99%), Postives = 84/179 (46.93%), Query Frame = 3 
Query:   45 ETCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTE-LDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTG----GEDNCCVGKIYDNGGLCTTEGAAPCII-----YDDTDEEEASEVAT 551
            +TC D   GI   DG+G VCC   C  C G+GC    S   L +  CC   ++  G+YCDDT+E PCIIGS P T                   TCS+G  GI+ +G  VCC + CG+C G GC         G ++CC   +   G  C     APCII      DD D E A E  T
Sbjct:  336 QTCSDGTEGI---DGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQ-------TCSDGTEGIDGNG-VVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQT 503
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.920e-21
Identity = 60/158 (37.97%), Postives = 77/158 (48.73%), Query Frame = 3 
Query:   48 TCVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSST-ELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCS----DLTGGEDNCCVGKIYDNGGLCTTEGAAPCI 506
            TC D + GI   DG+G VCC   C  CGGEGC+   +   L +  CC   ++ A  YCD T + PCI GS P                      C+NG  GI+ +G  VCC ++CG+CGG GCS    D   G ++CC G +      C   G APCI
Sbjct:   23 TCNDGIEGI---DGNGVVCCPRHCGQCGGEGCTGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGSPPE-------------------GECNNGIEGIDGNG-VVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCI 157
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.070e-20
Identity = 62/153 (40.52%), Postives = 80/153 (52.29%), Query Frame = 3 
Query:   51 CVDNVSGIRSSDGSGDVCCNAKCPACGGEGCSYPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXTCSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTGGEDNCCVGKIYDNGGLCTTEGAAPCII 509
            C   + GI++SD    VCC+  C +CGG GCS     E    +CC   +R +G  C  T E PCI+ +SP  +T                 TC  G  G+++S  DVCCA+ CG CGG GCSD  GGEDNCC  +I      C+  G APCI+
Sbjct:  332 CDGGIVGIQASD----VCCSLSCESCGGSGCSGRDGGE---DECCGGGVRASGRDCSVTGEAPCIV-TSPEPSTPAPTPAPTRAAG-----TCDGGIVGVQAS--DVCCALSCGSCGGDGCSDRDGGEDNCCGVEIRTANLDCSVTGEAPCIV 469
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D7FRT2_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.280e-16
Identity = 75/269 (27.88%), Postives = 112/269 (41.64%), Query Frame = 3 
Query:  615 AGYVVGTSY--IGCFEETGSD---PFSYRVEITGMTPELCYAECTTKDALYMGLMGSNECACGEDEDYLDSDKTSGTCDSVCEG-DDSICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGE-----------------------------------------------------IDGYAYKKCY-DFDGEEPFDAVVGDEG-MTPEMCYEICTMVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSDYSCGGTEAYDMYQL 1238
            AG V   SY  IGC+ +   +   P     +   M+ E C A C ++ + Y G+   NEC CG+D DY  +   +GTC+  C G D+++CGG  +F LY+        G    SD D  G+                                                     + G  +  CY D+D +   D +  DE  +TP  C E C        GV  G +C CG+  DY  +G   GTC+ SC+GDS+ +CGG E+ +++ +
Sbjct:  435 AGVVASDSYEYIGCYNDDTQNSLLPVLALDDDDNMSVEKCIAACVSEGSQYAGIKEGNECRCGDDVDY--TLHGTGTCNFSCTGSDETVCGGEYAFDLYEIHGDGGVDGVV-SSDTDDQGDDTGGVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGGTHMGCYEDYDSDPILDFLYEDEDTLTPASCIESCREEGEELAGVQGGSQCWCGTTDDYTRYG--TGTCNFSCSGDSEQTCGGRESANVWTV 698
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.500e-13
Identity = 68/218 (31.19%), Postives = 103/218 (47.25%), Query Frame = 3 
Query:  642 IGCFEETGSDPFSYRVEIT--GMTPELCYAECTTKDALYMGLMGSNECACGE-DEDYLDSDKTSGTCDSVCEGDDS-ICGGVDSFGLYKFLSSSSDSGTFHKSDLDHNGEIDGYAYKKCYDFDGEEPF--DAVVGDEGMTPEMCYEICTMVSARYFGVYAGKECGCGS-NSDYIVFGGTPGTCDMSCAGDSDYSCGGTEAYDMYQLVDNNIGLDDDSP 1274
            +GC+E+   D     + ++   MT ELC  E T   + Y       EC CG  D DY    +++G C   C GD S  CGG ++  +Y +   S+ S T        +  +       CY  D E+    D V+ D  MT E+C   C    + YF    G+EC CGS  +DY + G +   C  +C+GD+D +CGG +A ++Y+  D++      SP
Sbjct:  200 LGCYEDDPEDRIMDNLALSDSSMTTELC--ELTCVGSTYFATQYRRECWCGSADADYALHGESTG-CTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALG------CYADDPEDRIMDDLVLSDSSMTTELCELTCE--GSTYFATQYGRECWCGSAGADYALHGEST-DCTYACSGDTDQTCGGFDAANVYRYPDDSTPSPTPSP 405
[Close]
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.070e-11
Identity = 79/181 (43.65%), Postives = 92/181 (50.83%), Query Frame = 3 
Query:   48 TCVDN-VSGIRSSDGSGDVCCNAKCPACGGEGCS-YPSSTELDASDCCISFIRDAGIYCDDTSEGPCIIGSSPSTTTXXXXXXXXXXXXXXXXXT-----------CSNGFSGIESSGGDVCCAVECGRCGGSGCSDLTGGE------DNCCVGKIYDNGGLCTTEGAAPCIIYDDTDEEE 533
            TC  + V GI SS+     CC+ +C ACGG GCS +  +  L A +CC + I   G  C  T   PC I S   +  XXXXXXXXXXXXXXXXX             S G  GIESS    CC V CG CGG GCS    GE        CC  +I D+G  C+  G APC +  D D  E
Sbjct:  393 TCASHGVVGIESSNQK--ACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVREGESCAATGMAPCYIDSDDESXXXXXXXXXXXXXXXXXXXXXXXXGEGTAMCASYGVVGIESSNQKACCDVRCGACGGVGCSKF--GEAYGLDASYCCSNEIVDDGESCSATGMAPCFMESDDDSIE 569
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9768.23870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ60_ECTSI4.570e-3829.44WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ68_ECTSI5.680e-3131.93WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JUS5_9PHAE2.030e-2240.12MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JGP9_9PHAE2.090e-2237.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI1.150e-2137.99Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D7G8L8_ECTSI2.920e-2137.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U7_ECTSI3.070e-2040.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRT2_ECTSI1.280e-1627.88EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LEK9_ECTSI3.500e-1331.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI1.070e-1143.65N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9768contigP-canaliculata_contig9768:1058..7415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog2880.D7FRS1
KEGG koko:K22017
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons9
Model size2232
Cds size867
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.9030232-UTR-P-canaliculata_contig9768:1057..13091622817339.9030232-UTR-P-canaliculata_contig9768:1057..1309Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 1058..1309 +
1693495233.40095-UTR-P-canaliculata_contig9768:1057..13091693495233.40095-UTR-P-canaliculata_contig9768:1057..1309Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 1058..1309 +
1622817339.9140062-UTR-P-canaliculata_contig9768:1898..21591622817339.9140062-UTR-P-canaliculata_contig9768:1898..2159Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 1899..2159 +
1693495233.41679-UTR-P-canaliculata_contig9768:1898..21591693495233.41679-UTR-P-canaliculata_contig9768:1898..2159Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 1899..2159 +
1622817339.924575-UTR-P-canaliculata_contig9768:2373..24121622817339.924575-UTR-P-canaliculata_contig9768:2373..2412Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 2374..2412 +
1693495233.429838-UTR-P-canaliculata_contig9768:2373..24121693495233.429838-UTR-P-canaliculata_contig9768:2373..2412Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 2374..2412 +
1622817339.9390786-UTR-P-canaliculata_contig9768:2714..27641622817339.9390786-UTR-P-canaliculata_contig9768:2714..2764Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 2715..2764 +
1693495233.4428124-UTR-P-canaliculata_contig9768:2714..27641693495233.4428124-UTR-P-canaliculata_contig9768:2714..2764Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 2715..2764 +
1622817340.0229025-UTR-P-canaliculata_contig9768:6229..62621622817340.0229025-UTR-P-canaliculata_contig9768:6229..6262Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 6230..6262 +
1693495233.5214028-UTR-P-canaliculata_contig9768:6229..62621693495233.5214028-UTR-P-canaliculata_contig9768:6229..6262Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 6230..6262 +
1622817340.0384822-UTR-P-canaliculata_contig9768:6685..74151622817340.0384822-UTR-P-canaliculata_contig9768:6685..7415Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 6686..7415 +
1693495233.5313613-UTR-P-canaliculata_contig9768:6685..74151693495233.5313613-UTR-P-canaliculata_contig9768:6685..7415Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9768 6686..7415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.9525266-CDS-P-canaliculata_contig9768:2764..28751622817339.9525266-CDS-P-canaliculata_contig9768:2764..2875Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 2765..2875 +
1693495233.4566908-CDS-P-canaliculata_contig9768:2764..28751693495233.4566908-CDS-P-canaliculata_contig9768:2764..2875Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 2765..2875 +
1622817339.9677472-CDS-P-canaliculata_contig9768:3297..35201622817339.9677472-CDS-P-canaliculata_contig9768:3297..3520Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 3298..3520 +
1693495233.4689748-CDS-P-canaliculata_contig9768:3297..35201693495233.4689748-CDS-P-canaliculata_contig9768:3297..3520Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 3298..3520 +
1622817339.9805806-CDS-P-canaliculata_contig9768:4199..43121622817339.9805806-CDS-P-canaliculata_contig9768:4199..4312Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 4200..4312 +
1693495233.480663-CDS-P-canaliculata_contig9768:4199..43121693495233.480663-CDS-P-canaliculata_contig9768:4199..4312Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 4200..4312 +
1622817339.9943683-CDS-P-canaliculata_contig9768:4552..47811622817339.9943683-CDS-P-canaliculata_contig9768:4552..4781Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 4553..4781 +
1693495233.4987025-CDS-P-canaliculata_contig9768:4552..47811693495233.4987025-CDS-P-canaliculata_contig9768:4552..4781Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 4553..4781 +
1622817340.0071385-CDS-P-canaliculata_contig9768:6038..62291622817340.0071385-CDS-P-canaliculata_contig9768:6038..6229Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 6039..6229 +
1693495233.51112-CDS-P-canaliculata_contig9768:6038..62291693495233.51112-CDS-P-canaliculata_contig9768:6038..6229Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9768 6039..6229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9768.23870.1prot_P-canaliculata_contig9768.23870.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9768 2765..6229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9768.23870.1

>prot_P-canaliculata_contig9768.23870.1 ID=prot_P-canaliculata_contig9768.23870.1|Name=mRNA_P-canaliculata_contig9768.23870.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=289bp
MSYYAGYVVGTSYIGCFEETGSDPFSYRVEITGMTPELCYAECTTKDALY
MGLMGSNECACGEDEDYLDSDKTSGTCDSVCEGDDSICGGVDSFGLYKFL
SSSSDSGTFHKSDLDHNGEIDGYAYKKCYDFDGEEPFDAVVGDEGMTPEM
CYEICTMVSARYFGVYAGKECGCGSNSDYIVFGGTPGTCDMSCAGDSDYS
CGGTEAYDMYQLVDNNIGLDDDSPEGGLLECSNGLAGVESSDGSVCCAAA
CGSCDGSRCVGTGGCCAEYIKAKYDTCSEKQSAPCVMD*
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mRNA from alignment at P-canaliculata_contig9768:1058..7415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9768.23870.1 ID=mRNA_P-canaliculata_contig9768.23870.1|Name=mRNA_P-canaliculata_contig9768.23870.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6358bp|location=Sequence derived from alignment at P-canaliculata_contig9768:1058..7415+ (Pelvetia canaliculata dioecious)
AGCAGGCAGCTGTACCCGCTTCTCAAGGCGAACGCGCCCTCGGAGAGACT
TGCGTCGACAACGTATCCGGCATCCGGTCCTCCGACGGCTCGGGGGACGT
GTGCTGCAACGCCAAATGTCCGGCATGCGGTGGCGAAGGCTGCTCGTACC
CCTCCAGCACAGAACTTGACGCAAGCGACTGTTGCATAAGCTTTATCCGG
GATGCTGGAATCTACTGCGACGACACTTCCGAGGGTCCCTGCATCATCGG
ATGTGAGAAGAGACGAGACGTCACAAAACACTTGATACAGTTATTACTTA
CAATATTTTAGAGCAGAGGGTTTTTTACGACTAAATGATTTCCACTAATT
TTACTACAGTAGCTTGTTACTATGAATAGCTTGTTACTTACTGCTCCAAT
ACAAGTAGTGCCCATGACGTTATGTTCTGTCAGTAATGATAATGGTAGAG
TACATGCAGACTTTGCAGCTATTGAAGAAAAGCTTTTCCATATTATCGAG
TGTACTAATGCACCTTGTGCGCACTGTTCTAGTCTAGGACGTGTGCCGTG
TCACGCCGAGTCACCGTAAGAATGAAGCTTGCAATATTTGTACTACAGAT
AAAAAATGAATGGTACTTAACTAACTACATGCCGCAATGACAATGCAGCG
CTCTTTTTTAAACGTTTTAACCCGGTTATCCGCTTAAACCGTCGGTGTGG
GGTGCTGTTTTCCTATGTAGTGCCAATGTTAACTATTATAGTATAATTAG
TAACAAGATTTTGCTTCTGAACCGAGAGCGCAAACTGCCCCATCCGATAC
ACGATTTCCTTCTTCTTTCGTTGGGCTTTCGGCTGGGGCAGCCTCCCCGT
CAACAACTACCAGTTCTACCGGTTCGACGAGTGCCCCCACTTCCACAACC
ACGAGTTCGAGCACTTGCAGCAATGGCTTCTCAGGTATTGAGTCCTCGGG
CGGCGATGTGTGCTGTGCGGTGGAGTGCGGCAGGTGCGGTGGGTCAGGCT
GCTCCGACTTAACAGGGGGGGAGGACAATTGTTGCGTCGGCAAGATCTAT
GACAACGGAGGCCTCTGCACCACCGAAGGAGCAGCGCCCTGCATTATCTA
CGGTAAGTTCAATGATAATTAATGGCAATTAGCTAACCACCTGATAACCA
CCCGGTTTCGGGAATTCGCGGGGAGGGCGCGCACGGAAGTTAAATTTGGA
TTGAGATGATTTTTTTTGTCCAATTTTGCTAAGCCATATTCCATTCTCAT
TACCCAACGCAAAAATCTCCTCCACGTGTCATGTGTCATGTGGCCGTTTC
CGCCCCCCTCGCCTAGATGATACAGACGAAGAAGAAGCTTCTGAGGTGGC
AACAGGTGAGTTGAAATAGCACGTAGGAGCTGGGTTAAGAGCTTTCTCGG
GGAAGATTGTTTTTTCGCCGCAGCCCAACGCCCGGAGAACGGCAACCAAA
AATCCTTTGTGAGATGCGGTCGAACTCCGTTTGTGAATTACTGCTCTTCT
CTTGTCACTGTGCCCTCTTGTTATCTTGTGTTTATGTTATGTTACCCTCT
TCCGCTGTCGAAATCCTTTCACTTTCACATTCCTCGTATCCTTAATATCC
TTCATATCCTTCATATTTTCCTTTTTCATGCGCCGCACTTCATGCCCCCG
TTTGCAGGGACAACAACTGTATCCTCGACTCCCACGACGACTCCTACGCC
TCAGCCGATGTCGTACTATGCCGGCTACGTTGTGGGCACGTCGTACATCG
GCTGCTTCGAGGAGACAGGGTCCGACCCGTTCAGCTATCGGGTAGAGATC
ACGGGCATGACCCCCGAGGTGAGAAGGTGCTGAGGGGCAAGAGCACGTTT
TGTTGGGGGGGGGCGGGAGGAGTTTTTTTTTTTCCACCCTCTGCATTGTT
TGGTCCCATTTAATGTTCAAGAGGGCGTCTTAGTGCTAGACGGAACACCC
CGTAGTATATATCAGGGGTACTGATTGAAAATACCCTAGAATCAACTGTA
GTACAGAAGCGTCGTCGTTTTTGATAACTTTCCCTTGTCTTGGGGGGCAA
TTGGAATGTGCCCCTTCCGTAGACTATCCCATTAAAATTGCTACAGTAGT
TGTACCATTAACACTTGTTACTGTACCTAATGTACAGTAATATCATGGTA
TTAGTAGTACCTGTCTTGTTTTTACCTTGGACTCTGTCTTACTGTGTTGC
TGTATTACTTTTGTCCGGCAAAACGAATGCTGGCGAACAGCTTTGCTACG
CTGAGTGCACCACGAAGGATGCCCTCTATATGGGGCTCATGGGTAGCAAC
GAGTGCGCTTGCGGGGAGGACGAAGACTACTTGGACTCGGATAAGACGTC
TGGGACCTGCGACTCCGTCTGCGAGGGCGACGATAGCATCTGCGGAGGAG
TGGACTCCTTCGGGCTATACAAGTTCCTGTCCAGCAGCTCGGATTCCGGA
ACCTTCCACAAATGTAGGCTGGTCAACTTTTAAATGGTTACTCTAGCTGG
TTAATGACGCGCATTGTTTTGCCATCCCGTTCACTCATCATGTCCATCAT
GTCTTTCTGTTGCAGTCGTGTCGGTTTCCGTCTTTCCTTCGCTTGGAGCG
GAGAAGGGAAGGGCGGCGAAATAATGGGGAAATAATGGAGAAATAATCAA
GAGAATGATAACAAATAATAGAGTTGTAAGAAAGTAAGAGAATGATAACA
AATAATAGAGTTGTAAGAAAGTGTTCGGAAATAATAGCGGGGACTGAGAA
AGCGACACTACATTTCGATCGCTCCGTGGGTGGGTGAACGTTTAGAATCT
CTCCGGAAAGGGCTCGGGGACTGGGCTGCAGGGCATGCGTGTGATTTGAG
GCGCGGTGGCTGGTAAATAACGTATGGTGTTACAATTCAGCAACACGCAC
TATTTTTGTCCCCAGCCGTTGCAATGTTTTGCCCTACTGTAAGGTAGTGA
GAGAAAAAAATACCTCAGAAAGACCCCTTGGGGTGCAACCCCTCTTCCTT
CGGTTCTTGTTTTGAGTAAGAAAGCTGCGCGACGTAGAAGACACTGCTTC
GGAATCCCTCGTCTATTCCTCCGTTAATTTTATGTCCTCGTCCGAAACGC
CCCCCACGGAACGAACGATTTCGAACGTGACTTGTCGAGCAGCGGATTTG
GATCATAACGGCGAGATTGATGGTTACGCGTACAAGAAATGCTACGACTT
CGACGGAGAAGAACCCTTCGACGCCGTCGTAGGAGATGAGGGCATGACTC
CGGAGGCGAGAGAGAGCGTTACTGTTCGTCCTTTGTATTATTTACATTAG
TTACAGCCATCAATTAGATCAATTAGCTCATGAGAATAGGGAAAGGGGGG
ATGTCTCGTGGGGTGCTTCTTAGTAATGCCTCCCACCCGCCGGACCCCAG
CATGTTGCAGCTTTGCAGCGCTGGGTGGGAGAGGAAGCCCTTCAACCTCC
CGCTCTTGTCTTTGTATTTATCCCTGGCTCCCCTACTCCTTTCAGATGTG
CTACGAGATCTGTACCATGGTGTCGGCCCGGTATTTCGGCGTATACGCGG
GCAAGGAGTGTGGCTGCGGCAGCAATTCGGACTACATCGTGTTCGGGGGC
ACCCCGGGAACTTGCGACATGTCTTGCGCCGGAGACTCCGATTACTCCTG
CGGGGGCACGGAAGCATACGACATGTACCAGCTCGTGGACAACAACATCG
GTCTCGATGACGACTCCCCAGAGGGTGAGATACAGAGACTACTAACCCCC
CCATACTGTACAGTATGTAAATAAAAAAATGATTTGGACTCTATACAAGT
ACTCTGTAGCTATTAATGCCTTGGGGATTAATTTAAGGTGAATTCGTTAT
TTTCAAACGAGTGTAGTATTTCGTACAGTATGGATTAGGCTTAAAAATAT
TCATCTTGCCGTAGTATGGATCGTATTTTCTCAACCGTTGGCAAAGGGTT
TGAAATATGGAACATCAACCCACGCTCAGTGCAACAGGGCAGTAGACGAG
CAAACGTTCTCCAATATACAGTATTTACTTAAAAATTGGAGAGATGGCCC
CTTACGGGCACCTAGTGTAGCAGTATACTTGCAATAAATTTTCCAGCTTG
GGAATGTGGATCGATTTCTTATCCGATGATACGAAACGAAAACCGAAAAC
ATGCGGACCGGACAGAAATATTCTGCAACACGTATAATAGATAAGAGCCT
ATGGTTGATCATAATTCATCATATTTCCAGATTTAACACAATACTATAGT
TCTATTTTTACGCAAGCGGTTCTAGGTGTTATCTTGGGTTATACCATCGA
GTTAAGTCTTAAAGGTATAGGATATCGTGTACGTAAAAGAAAAAGGAAAA
CTTATTTTTTATCTAGGGTATAGTCATTCTGTTATCTTCGAAATACCGCA
AGAAACTACCGTTAAGTTCGATAACATCATACATAGATTGACGTCAGTTT
GTGCAGATTTTTTACTCGCCACCGGAGATATCCACGAGTATCAGTATACC
CTACTTGGAGGAATGCCGGAGAGGTTGGGTTCCAGAATCTCGAACTTCCA
GCTGTGTCTATACGCAGGCACTCGTAATAATGTTGTCAAACTGTTGTACC
TACTTTCTAGAAGTAAAACCTGTAGCTATTAAATACTTTTAATATCCATC
AGAAGTACTTAAAACCAGTACGTTTTGCAAGTTACTGTTTTCGTCCGTTG
TTCCAAGCGTAACGCACTCCCCTACTAATAGTAAGGACGAAAGGACGCCT
GTCCGACACAGACACGAGAGTGAGACGGAGAAACGGTGACAGTGACAGTG
GTGAACCGTGGTAAACGGGCGTCCTTGTACCTATTCACTTGTCGAGCTCT
TCATGTACATACAAAGTCTGTGTTATCTACCATCATCTAGATTATCTACA
TGAATCAACTGCAGGAGTGATACGTAAGCCTGGCCTCACGTTTATGAACC
ACCGTACATTCGACCTTTTCTTTTTTTCCAGGCGGTCTTCTTGAGTGCAG
CAACGGATTAGCAGGTGTGGAGTCCTCAGATGGCTCAGTGTGCTGCGCTG
CGGCCTGCGGCTCCTGCGACGGCTCGCGCTGCGTCGGCACCGGCGGGTGC
TGTGCTGAATACATCAAGGCAAAGTACGACACTTGCAGCGAGAAGCAGAG
CGCCCCGTGTGTCATGGATTAAAAACAACGAAAAACTAGCGGAGGTGTTG
AAACGGTGAGCACCAGTCATGTGTCATGGCTTGAATACAACGAAAAAAAG
GCAAAAGTGTCCTAACGGGGAGCACCAGATTCAGCCTGAGCGGATAATGA
ACAGGCTGGCGCAGGACGGGACGGGACGGGACGGCCGAACCTTGTCGCGC
GAAACCAAATTCTCAGGCGCGAACGAGAACAGGGAGAAACGTTCATTTTC
CTTGTTCAGCTGACCACGAGCAGGATTGGCAAACCATACACGGTTGATAC
CTACTCTGCTGAAGGAGATGGCCATAATGCATACATAAGGATAATGAGAG
CTCTAGAGAGTATAAGAAATGTGATGGCGTATTACAAATTGTGTACGCTT
GCCGCCTCATGTCCTATTGTAACCCCCCCTCTCCCTTCCCTGCTGACGCC
GGTTGGAAACCCCTCGTGTGAATTCCAGGGTTTCTGCTCCTATGTCGTAC
TTTATTAGTGCGTTGGTCGACGCTTATGCCATACGAGTATCGGAGAGATG
GCGCTTCCGGAGGGGGAGGGGAACAACGCACTCGACCGAGACGGTTTTTA
ATCAATCCCTTCCATCTCACTCGTTGAATCTGCCCAGTCCCAGTCCAGGC
TCGAGATGTTGGGATTTGCTAGATTTTCCTCCGTGACCTATGGGATACTC
GTAGCACAAAGGTTTCGACGCCCGTGTGGCCCCCAGGTGGCGGGACGGGC
CAGGATATGTAGTCAGAAAACAGATTTTTTAGTTCGCACCCGTCATGGAC
TACAGTACTACCAGACAACCACTGTCTTGTCGTCTGTCGTTTCTTCAACA
ACGATTGCCATAGGCGTTGCCGATCTCCCCTCCCCTGTCACTCGGAAATC
GACGGCAGGGGAATTCGAACTCCTGAATCGTGGTGTTCCGAGACATTATT
AAAGCCCCGCACGGTAGGAACGGTACACTATACGAGTAAGTTCATATCAT
GTCAAAGTCGACGTGTTTTGGCACGTTCCTTCCGCTTGATTGGTAAAAGT
GATCGAGAGTGCGATGATTGATATTCCAAAAGAGGACACAAGGTCGAGAC
ACAGCCCTTGAGAGAGGCCCGCACAGCTCGATATGGCACACAAGTAGGAG
GGTGTATTTTTATATTGGATACATATATATATTTCTTTTCGAGTTTCTTG
GTTTTCGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9768:1058..7415+

>mRNA_P-canaliculata_contig9768.23870.1 ID=mRNA_P-canaliculata_contig9768.23870.1|Name=mRNA_P-canaliculata_contig9768.23870.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at P-canaliculata_contig9768:1058..7415+ (Pelvetia canaliculata dioecious)
ATGTCGTACTATGCCGGCTACGTTGTGGGCACGTCGTACATCGGCTGCTT
CGAGGAGACAGGGTCCGACCCGTTCAGCTATCGGGTAGAGATCACGGGCA
TGACCCCCGAGATGTCGTACTATGCCGGCTACGTTGTGGGCACGTCGTAC
ATCGGCTGCTTCGAGGAGACAGGGTCCGACCCGTTCAGCTATCGGGTAGA
GATCACGGGCATGACCCCCGAGCTTTGCTACGCTGAGTGCACCACGAAGG
ATGCCCTCTATATGGGGCTCATGGGTAGCAACGAGTGCGCTTGCGGGGAG
GACGAAGACTACTTGGACTCGGATAAGACGTCTGGGACCTGCGACTCCGT
CTGCGAGGGCGACGATAGCATCTGCGGAGGAGTGGACTCCTTCGGGCTAT
ACAAGTTCCTGTCCAGCAGCTCGGATTCCGGAACCTTCCACAAATCTTTG
CTACGCTGAGTGCACCACGAAGGATGCCCTCTATATGGGGCTCATGGGTA
GCAACGAGTGCGCTTGCGGGGAGGACGAAGACTACTTGGACTCGGATAAG
ACGTCTGGGACCTGCGACTCCGTCTGCGAGGGCGACGATAGCATCTGCGG
AGGAGTGGACTCCTTCGGGCTATACAAGTTCCTGTCCAGCAGCTCGGATT
CCGGAACCTTCCACAAATCGGATTTGGATCATAACGGCGAGATTGATGGT
TACGCGTACAAGAAATGCTACGACTTCGACGGAGAAGAACCCTTCGACGC
CGTCGTAGGAGATGAGGGCATGACTCCGGAGCGGATTTGGATCATAACGG
CGAGATTGATGGTTACGCGTACAAGAAATGCTACGACTTCGACGGAGAAG
AACCCTTCGACGCCGTCGTAGGAGATGAGGGCATGACTCCGGAGATGTGC
TACGAGATCTGTACCATGGTGTCGGCCCGGTATTTCGGCGTATACGCGGG
CAAGGAGTGTGGCTGCGGCAGCAATTCGGACTACATCGTGTTCGGGGGCA
CCCCGGGAACTTGCGACATGTCTTGCGCCGGAGACTCCGATTACTCCTGC
GGGGGCACGGAAGCATACGACATGTACCAGCTCGTGGACAACAACATCGG
TCTCGATGACGACTCCCCAGAGGATGTGCTACGAGATCTGTACCATGGTG
TCGGCCCGGTATTTCGGCGTATACGCGGGCAAGGAGTGTGGCTGCGGCAG
CAATTCGGACTACATCGTGTTCGGGGGCACCCCGGGAACTTGCGACATGT
CTTGCGCCGGAGACTCCGATTACTCCTGCGGGGGCACGGAAGCATACGAC
ATGTACCAGCTCGTGGACAACAACATCGGTCTCGATGACGACTCCCCAGA
GGGCGGTCTTCTTGAGTGCAGCAACGGATTAGCAGGTGTGGAGTCCTCAG
ATGGCTCAGTGTGCTGCGCTGCGGCCTGCGGCTCCTGCGACGGCTCGCGC
TGCGTCGGCACCGGCGGGTGCTGTGCTGAATACATCAAGGCAAAGTACGA
CACTTGCAGCGAGAAGCAGAGCGCCCCGTGTGTCATGGATTAAGCGGTCT
TCTTGAGTGCAGCAACGGATTAGCAGGTGTGGAGTCCTCAGATGGCTCAG
TGTGCTGCGCTGCGGCCTGCGGCTCCTGCGACGGCTCGCGCTGCGTCGGC
ACCGGCGGGTGCTGTGCTGAATACATCAAGGCAAAGTACGACACTTGCAG
CGAGAAGCAGAGCGCCCCGTGTGTCATGGATTAA
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