prot_P-canaliculata_contig97473.23829.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig97473.23829.1
Unique Nameprot_P-canaliculata_contig97473.23829.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length325
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97473.23829.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 132..325
e-value: 4.0E-10
score: 41.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..131
e-value: 5.9E-8
score: 34.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..168
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 136..308
NoneNo IPR availablePFAMPF13432TPR_16coord: 144..204
e-value: 0.0046
score: 17.6
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 38..105
score: 9.766

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97473contigP-canaliculata_contig97473:23..997 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97473.23829.1mRNA_P-canaliculata_contig97473.23829.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig97473 23..1018 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig97473.23829.1 ID=prot_P-canaliculata_contig97473.23829.1|Name=mRNA_P-canaliculata_contig97473.23829.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=325bp
MPDDPLALAVRANIELRQGHPEAAARRLKPIVNSVAPDKVIAVYALSLFE
IGRQEEAIAMLTKRVEAEAKAFHSRLALARMYRQLGKRPFADKLYSQSVD
EFPNDTILMVEWLETRYEMGQRLVVRESLNRLADHTKNFDILLSAARINI
DFGDYVVAKKQLAAAEEIRGLSPGIVVEKARMALAVGQFDEAIQQLLAIA
DAVSEDAAVQLLLLEAYIGAKNAAGQVNVGKTLAKKFRGSYAQAMSRGLT
DLSKGRNREARNAFERAIKVGGETLSALQKADTLALMAQTVRNEDPETAK
TLLRQALLLDVMNPGANFVSGNIAF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom