prot_P-canaliculata_contig97337.23817.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig97337.23817.1
Unique Nameprot_P-canaliculata_contig97337.23817.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length361
Homology
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BLAST of mRNA_P-canaliculata_contig97337.23817.1 vs. uniprot
Match: A0A518ERC4_9BACT (Electron transport protein YccM n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ERC4_9BACT)

HSP 1 Score: 223 bits (567), Expect = 2.910e-63
Identity = 139/353 (39.38%), Postives = 199/353 (56.37%), Query Frame = 0 
Query:    1 FAYRGYRQEKDFLLSMGLAACFGILVVLVVRLVRRNDVRLPGLRLKAAGRVAPLGVALALGTLGVAAAGVPYGIVPAFGMWKASSAWLGLKGVIQEFRETGQRPALTDAQVAQAEAMLEHSMDVQRRSSIFNLENFERIAWGAALLNRPEDLAESTTEAVEGSKASVGQKVGAVDYMWRLGQVEGASAFLRRVYELHPESVSAINGLVAILVQKNELAEAESLVKAGLELHPDDAELLIRRSMFAGERREFSAAAGDLLRVLEMDRANFIARDQLWRLWSTTGKLEEAAKVLREGLALRKAPQQWRTELAWVLLTAGKPQEAIEEARVISRPEEEDLEVLRVAGRIFEAAGAT 353
            FA RGY QE+ FLLS+G+AACF  LV+L+VR+VRR+DV++PG+ LK AG+  P+GV + L TLG+AA  VPYGIVP     +AS+AW  L      + E G R  L+  + A AEA+L+++  V+ RS + ++EN E + WG  L    E       EA+    A VG  +       + G++ GA A  R   E  P  + A NGL+ +LVQ++ + EA  +  A LE+ P+   +L++R    G   +      DL   L +D     AR+ L+RL   +     A  VLREG+AL  +P + R  LA VLL +G+   AI+EA  ++R  E D  +L VA  +   AGAT
Sbjct:  307 FAVRGYYQERGFLLSVGIAACFAYLVILLVRMVRRSDVQVPGIVLKKAGKARPMGVLVGLATLGIAACAVPYGIVPEVSHRRASAAWSVLADARARWFEPG-RAELSSEEGAAAEALLDNARTVRERSGVRSMENTEHLIWGELLTGDEEAFDGYLREALGFPGAGVGLLMLRAAQYGKTGELNGAEAAYRSALEAEPGYLPATNGLMGLLVQQDRIEEARKVADAALEVEPEAVHVLVQRGFIRGSTSDVEGGVADLREALRLDPGLVDARNLLFRLLMQSQNAGAAEAVLREGIALENSPVELRAHLAQVLLVSGQRDAAIQEAVDLARLAEGDPALLGVARAVLSQAGAT 658
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97337.23817.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A518ERC4_9BACT2.910e-6339.38Electron transport protein YccM n=1 Tax=Planctomyc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 98..361
e-value: 2.3E-25
score: 91.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 177..329
NoneNo IPR availablePFAMPF14559TPR_19coord: 181..236
e-value: 1.2E-6
score: 28.9
NoneNo IPR availablePANTHERPTHR45586FAMILY NOT NAMEDcoord: 147..329
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..75
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 76..361
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 15..33
NoneNo IPR availableTMHMMTMhelixcoord: 54..76
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 179..361
score: 16.772

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97337contigP-canaliculata_contig97337:1..1083 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97337.23817.1mRNA_P-canaliculata_contig97337.23817.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig97337 1..1083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig97337.23817.1 ID=prot_P-canaliculata_contig97337.23817.1|Name=mRNA_P-canaliculata_contig97337.23817.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=361bp
FAYRGYRQEKDFLLSMGLAACFGILVVLVVRLVRRNDVRLPGLRLKAAGR
VAPLGVALALGTLGVAAAGVPYGIVPAFGMWKASSAWLGLKGVIQEFRET
GQRPALTDAQVAQAEAMLEHSMDVQRRSSIFNLENFERIAWGAALLNRPE
DLAESTTEAVEGSKASVGQKVGAVDYMWRLGQVEGASAFLRRVYELHPES
VSAINGLVAILVQKNELAEAESLVKAGLELHPDDAELLIRRSMFAGERRE
FSAAAGDLLRVLEMDRANFIARDQLWRLWSTTGKLEEAAKVLREGLALRK
APQQWRTELAWVLLTAGKPQEAIEEARVISRPEEEDLEVLRVAGRIFEAA
GATEDAEKVRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom