mRNA_P-canaliculata_contig97337.23817.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97337.23817.1
Unique NamemRNA_P-canaliculata_contig97337.23817.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97337.23817.1 vs. uniprot
Match: A0A518ERC4_9BACT (Electron transport protein YccM n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ERC4_9BACT)

HSP 1 Score: 223 bits (567), Expect = 2.910e-63
Identity = 139/353 (39.38%), Postives = 199/353 (56.37%), Query Frame = 1 
Query:    1 FAYRGYRQEKDFLLSMGLAACFGILVVLVVRLVRRNDVRLPGLRLKAAGRVAPLGVALALGTLGVAAAGVPYGIVPAFGMWKASSAWLGLKGVIQEFRETGQRPALTDAQVAQAEAMLEHSMDVQRRSSIFNLENFERIAWGAALLNRPEDLAESTTEAVEGSKASVGQKVGAVDYMWRLGQVEGASAFLRRVYELHPESVSAINGLVAILVQKNELAEAESLVKAGLELHPDDAELLIRRSMFAGERREFSAAAGDLLRVLEMDRANFIARDQLWRLWSTTGKLEEAAKVLREGLALRKAPQQWRTELAWVLLTAGKPQEAIEEARVISRPEEEDLEVLRVAGRIFEAAGAT 1059
            FA RGY QE+ FLLS+G+AACF  LV+L+VR+VRR+DV++PG+ LK AG+  P+GV + L TLG+AA  VPYGIVP     +AS+AW  L      + E G R  L+  + A AEA+L+++  V+ RS + ++EN E + WG  L    E       EA+    A VG  +       + G++ GA A  R   E  P  + A NGL+ +LVQ++ + EA  +  A LE+ P+   +L++R    G   +      DL   L +D     AR+ L+RL   +     A  VLREG+AL  +P + R  LA VLL +G+   AI+EA  ++R  E D  +L VA  +   AGAT
Sbjct:  307 FAVRGYYQERGFLLSVGIAACFAYLVILLVRMVRRSDVQVPGIVLKKAGKARPMGVLVGLATLGIAACAVPYGIVPEVSHRRASAAWSVLADARARWFEPG-RAELSSEEGAAAEALLDNARTVRERSGVRSMENTEHLIWGELLTGDEEAFDGYLREALGFPGAGVGLLMLRAAQYGKTGELNGAEAAYRSALEAEPGYLPATNGLMGLLVQQDRIEEARKVADAALEVEPEAVHVLVQRGFIRGSTSDVEGGVADLREALRLDPGLVDARNLLFRLLMQSQNAGAAEAVLREGIALENSPVELRAHLAQVLLVSGQRDAAIQEAVDLARLAEGDPALLGVARAVLSQAGAT 658
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97337.23817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A518ERC4_9BACT2.910e-6339.38Electron transport protein YccM n=1 Tax=Planctomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97337contigP-canaliculata_contig97337:1..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog314287.GB2207_06803
EggNOG free text desc.COG0457 FOG TPR repeat
EggNOG OGs1J5FN@118884,1MYB8@1224,1RQIX@1236,COG0457@1,COG0457@2
COG Functional cat.O
Best tax levelunclassified Gammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size1083
Cds size1083
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.0402687-CDS-P-canaliculata_contig97337:0..10831622817337.0402687-CDS-P-canaliculata_contig97337:0..1083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97337 1..1083 +
1693495231.6860657-CDS-P-canaliculata_contig97337:0..10831693495231.6860657-CDS-P-canaliculata_contig97337:0..1083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97337 1..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97337.23817.1prot_P-canaliculata_contig97337.23817.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97337 1..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97337.23817.1

>prot_P-canaliculata_contig97337.23817.1 ID=prot_P-canaliculata_contig97337.23817.1|Name=mRNA_P-canaliculata_contig97337.23817.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=361bp
FAYRGYRQEKDFLLSMGLAACFGILVVLVVRLVRRNDVRLPGLRLKAAGR
VAPLGVALALGTLGVAAAGVPYGIVPAFGMWKASSAWLGLKGVIQEFRET
GQRPALTDAQVAQAEAMLEHSMDVQRRSSIFNLENFERIAWGAALLNRPE
DLAESTTEAVEGSKASVGQKVGAVDYMWRLGQVEGASAFLRRVYELHPES
VSAINGLVAILVQKNELAEAESLVKAGLELHPDDAELLIRRSMFAGERRE
FSAAAGDLLRVLEMDRANFIARDQLWRLWSTTGKLEEAAKVLREGLALRK
APQQWRTELAWVLLTAGKPQEAIEEARVISRPEEEDLEVLRVAGRIFEAA
GATEDAEKVRR
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mRNA from alignment at P-canaliculata_contig97337:1..1083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97337.23817.1 ID=mRNA_P-canaliculata_contig97337.23817.1|Name=mRNA_P-canaliculata_contig97337.23817.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at P-canaliculata_contig97337:1..1083+ (Pelvetia canaliculata dioecious)
TTTGCGTACCGGGGCTACCGCCAGGAGAAGGACTTTCTTCTCTCCATGGG
GCTCGCGGCATGCTTCGGGATTCTCGTGGTGCTGGTGGTTCGGCTAGTGC
GCCGAAATGACGTGCGCCTGCCGGGACTGAGGCTGAAGGCGGCGGGGCGC
GTGGCGCCTTTGGGGGTGGCGCTGGCGCTCGGTACTTTGGGGGTAGCGGC
GGCTGGGGTTCCGTATGGGATCGTGCCGGCATTCGGCATGTGGAAGGCGA
GCAGCGCTTGGTTGGGTCTGAAGGGGGTGATTCAGGAGTTTCGGGAGACG
GGGCAGCGTCCGGCGCTGACCGATGCGCAGGTCGCGCAGGCCGAGGCGAT
GCTGGAGCACTCCATGGACGTGCAGCGGCGAAGCTCTATCTTCAACCTGG
AAAACTTCGAGCGCATCGCTTGGGGCGCTGCGCTCTTGAATCGGCCGGAG
GACTTGGCGGAGTCCACGACTGAGGCCGTGGAGGGTAGCAAGGCGAGCGT
TGGTCAGAAGGTGGGCGCCGTCGACTACATGTGGAGGCTCGGGCAGGTGG
AGGGTGCGTCTGCCTTCCTGCGGAGGGTTTACGAGCTACATCCAGAGTCG
GTGTCGGCTATCAACGGCCTCGTTGCGATCTTGGTGCAAAAGAATGAGCT
CGCGGAGGCCGAGAGCCTTGTGAAGGCGGGGCTTGAGCTTCATCCAGACG
ATGCTGAGTTGCTGATCAGGCGCTCGATGTTCGCCGGTGAGAGGCGCGAA
TTTTCTGCGGCCGCCGGTGACTTGCTCCGGGTGCTTGAAATGGACCGCGC
GAATTTCATCGCGCGGGATCAGCTTTGGAGGCTCTGGAGTACGACGGGAA
AGCTGGAGGAGGCCGCGAAGGTTTTGCGGGAGGGTCTCGCTCTTCGGAAG
GCGCCCCAGCAGTGGCGTACGGAACTGGCGTGGGTGCTCTTGACGGCCGG
GAAGCCCCAGGAGGCCATCGAGGAAGCTCGAGTGATTTCCAGGCCAGAGG
AAGAGGATCTCGAGGTCTTGAGAGTCGCCGGGCGCATCTTCGAAGCCGCA
GGAGCCACCGAGGACGCGGAGAAAGTGCGAAGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig97337:1..1083+

>mRNA_P-canaliculata_contig97337.23817.1 ID=mRNA_P-canaliculata_contig97337.23817.1|Name=mRNA_P-canaliculata_contig97337.23817.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at P-canaliculata_contig97337:1..1083+ (Pelvetia canaliculata dioecious)
TTTGCGTACCGGGGCTACCGCCAGGAGAAGGACTTTCTTCTCTCCATGGG
GCTCGCGGCATGCTTCGGGATTCTCGTGGTGCTGGTGGTTCGGCTAGTGC
GCCGAAATGACGTGCGCCTGCCGGGACTGAGGCTGAAGGCGGCGGGGCGC
GTGGCGCCTTTGGGGGTGGCGCTGGCGCTCGGTACTTTGGGGGTAGCGGC
GGCTGGGGTTCCGTATGGGATCGTGCCGGCATTCGGCATGTGGAAGGCGA
GCAGCGCTTGGTTGGGTCTGAAGGGGGTGATTCAGGAGTTTCGGGAGACG
GGGCAGCGTCCGGCGCTGACCGATGCGCAGGTCGCGCAGGCCGAGGCGAT
GCTGGAGCACTCCATGGACGTGCAGCGGCGAAGCTCTATCTTCAACCTGG
AAAACTTCGAGCGCATCGCTTGGGGCGCTGCGCTCTTGAATCGGCCGGAG
GACTTGGCGGAGTCCACGACTGAGGCCGTGGAGGGTAGCAAGGCGAGCGT
TGGTCAGAAGGTGGGCGCCGTCGACTACATGTGGAGGCTCGGGCAGGTGG
AGGGTGCGTCTGCCTTCCTGCGGAGGGTTTACGAGCTACATCCAGAGTCG
GTGTCGGCTATCAACGGCCTCGTTGCGATCTTGGTGCAAAAGAATGAGCT
CGCGGAGGCCGAGAGCCTTGTGAAGGCGGGGCTTGAGCTTCATCCAGACG
ATGCTGAGTTGCTGATCAGGCGCTCGATGTTCGCCGGTGAGAGGCGCGAA
TTTTCTGCGGCCGCCGGTGACTTGCTCCGGGTGCTTGAAATGGACCGCGC
GAATTTCATCGCGCGGGATCAGCTTTGGAGGCTCTGGAGTACGACGGGAA
AGCTGGAGGAGGCCGCGAAGGTTTTGCGGGAGGGTCTCGCTCTTCGGAAG
GCGCCCCAGCAGTGGCGTACGGAACTGGCGTGGGTGCTCTTGACGGCCGG
GAAGCCCCAGGAGGCCATCGAGGAAGCTCGAGTGATTTCCAGGCCAGAGG
AAGAGGATCTCGAGGTCTTGAGAGTCGCCGGGCGCATCTTCGAAGCCGCA
GGAGCCACCGAGGACGCGGAGAAAGTGCGAAGATTTGCGTACCGGGGCTA
CCGCCAGGAGAAGGACTTTCTTCTCTCCATGGGGCTCGCGGCATGCTTCG
GGATTCTCGTGGTGCTGGTGGTTCGGCTAGTGCGCCGAAATGACGTGCGC
CTGCCGGGACTGAGGCTGAAGGCGGCGGGGCGCGTGGCGCCTTTGGGGGT
GGCGCTGGCGCTCGGTACTTTGGGGGTAGCGGCGGCTGGGGTTCCGTATG
GGATCGTGCCGGCATTCGGCATGTGGAAGGCGAGCAGCGCTTGGTTGGGT
CTGAAGGGGGTGATTCAGGAGTTTCGGGAGACGGGGCAGCGTCCGGCGCT
GACCGATGCGCAGGTCGCGCAGGCCGAGGCGATGCTGGAGCACTCCATGG
ACGTGCAGCGGCGAAGCTCTATCTTCAACCTGGAAAACTTCGAGCGCATC
GCTTGGGGCGCTGCGCTCTTGAATCGGCCGGAGGACTTGGCGGAGTCCAC
GACTGAGGCCGTGGAGGGTAGCAAGGCGAGCGTTGGTCAGAAGGTGGGCG
CCGTCGACTACATGTGGAGGCTCGGGCAGGTGGAGGGTGCGTCTGCCTTC
CTGCGGAGGGTTTACGAGCTACATCCAGAGTCGGTGTCGGCTATCAACGG
CCTCGTTGCGATCTTGGTGCAAAAGAATGAGCTCGCGGAGGCCGAGAGCC
TTGTGAAGGCGGGGCTTGAGCTTCATCCAGACGATGCTGAGTTGCTGATC
AGGCGCTCGATGTTCGCCGGTGAGAGGCGCGAATTTTCTGCGGCCGCCGG
TGACTTGCTCCGGGTGCTTGAAATGGACCGCGCGAATTTCATCGCGCGGG
ATCAGCTTTGGAGGCTCTGGAGTACGACGGGAAAGCTGGAGGAGGCCGCG
AAGGTTTTGCGGGAGGGTCTCGCTCTTCGGAAGGCGCCCCAGCAGTGGCG
TACGGAACTGGCGTGGGTGCTCTTGACGGCCGGGAAGCCCCAGGAGGCCA
TCGAGGAAGCTCGAGTGATTTCCAGGCCAGAGGAAGAGGATCTCGAGGTC
TTGAGAGTCGCCGGGCGCATCTTCGAAGCCGCAGGAGCCACCGAGGACGC
GGAGAAAGTGCGAAGA
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