mRNA_P-canaliculata_contig97309.23814.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97309.23814.1
Unique NamemRNA_P-canaliculata_contig97309.23814.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97309.23814.1 vs. uniprot
Match: A0A5C6CW91_9BACT (BON domain protein n=1 Tax=Bythopirellula polymerisocia TaxID=2528003 RepID=A0A5C6CW91_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 1.210e-12
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   34 TSVDSLRQRLREHFEKLGYPQLQSIECEVAGDTVKLTGQLDSFYLKQVVQSVAVKLAGSHSIENLIEVN 240
            T    L +R++  F  LGYPQL ++ C+  G T+  TG L+S+YLKQ+ Q++A+K+ G   + N IEVN
Sbjct:   12 TDPTELVERVKATFAGLGYPQLANVACDAQGSTIYFTGVLNSYYLKQIAQTLAIKVPGVRRVVNNIEVN 80
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BLAST of mRNA_P-canaliculata_contig97309.23814.1 vs. uniprot
Match: A0A5B9QH45_9BACT (BON domain protein n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9QH45_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-11
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   49 LRQRLREHFEKLGYPQLQSIECEVAGDTVKLTGQLDSFYLKQVVQSVAVKLAGSHSIENLIEVN 240
            L ++++   +KLGYP+L++I C      + L G L S+YLKQVVQ++A+K+ G H + N IEV+
Sbjct:   14 LAEKVKNSIDKLGYPELKNIRCRAHQSDIHLQGHLASYYLKQVVQTIAIKVPGVHKVINDIEVS 77
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BLAST of mRNA_P-canaliculata_contig97309.23814.1 vs. uniprot
Match: UPI0013875108 (BON domain-containing protein n=1 Tax=Roseimaritima sediminicola TaxID=2662066 RepID=UPI0013875108)

HSP 1 Score: 53.9 bits (128), Expect = 1.310e-7
Identity = 23/64 (35.94%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   46 SLRQRLREHFEKLGYPQLQSIECEVAGDTVKLTGQLDSFYLKQVVQSVAVKLAGSHSIENLIEV 237
            S++++ +   ++  Y  L++++C V  DT++LTGQ+ SF+LKQ  Q +   +AG+  I+N +EV
Sbjct:   25 SIQRQAQARLQQSSYALLRNVDCTVTSDTLQLTGQIPSFFLKQTAQELVRDVAGAKRIKNELEV 88
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BLAST of mRNA_P-canaliculata_contig97309.23814.1 vs. uniprot
Match: A0A517ZUK1_9PLAN (BON domain protein n=3 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZUK1_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 2.270e-7
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   37 SVDSLRQRLREHFEKLGYPQLQSIECEVAGDTVKLTGQLDSFYLKQVVQSVAVKLAGSHSIENLIEV 237
            S D L +R+    ++LG  +L  + CE  G T+ L G  +S+Y KQ+ Q++A K+ G H + N ++V
Sbjct:   30 SKDQLAERVWNSMQRLGVHRLTRVRCESRGTTIVLRGTANSYYQKQLAQTIAAKVPGVHHVINQLQV 96
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BLAST of mRNA_P-canaliculata_contig97309.23814.1 vs. uniprot
Match: UPI0019BE34A8 (BON domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019BE34A8)

HSP 1 Score: 48.5 bits (114), Expect = 1.510e-5
Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   61 LREHFEKLGYPQLQSIECEVAGDTVKLTGQLDSFYLKQVVQSVAVKLAGSHSIENLIEV 237
            ++E   + G+ +L+ +  E  GDTV ++G++ +FYLKQ+VQS+A+   G   + N ++V
Sbjct:   30 IQEALNRTGHGELRRVGLECEGDTVTISGRVPTFYLKQLVQSIALAALGVERVINQLDV 88
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BLAST of mRNA_P-canaliculata_contig97309.23814.1 vs. uniprot
Match: A0A5K7XIG1_9BACT (BON domain-containing protein n=1 Tax=Lacipirellula parvula TaxID=2650471 RepID=A0A5K7XIG1_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 2.480e-5
Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   73 FEKLGYPQLQSIECEVAGDTVKLTGQLDSFYLKQVVQSVAVKLAGSHSIENLIEV 237
             E LGYP L S+ C  A + + L+G + S+YLKQ+ Q  A+++AGS  + N + V
Sbjct:   56 LESLGYPVLGSVSCAAAQEGLVLSGAVPSYYLKQMAQVAALRVAGSVRVVNRLIV 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97309.23814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5C6CW91_9BACT1.210e-1243.48BON domain protein n=1 Tax=Bythopirellula polymeri... [more]
A0A5B9QH45_9BACT1.330e-1143.75BON domain protein n=1 Tax=Bythopirellula goksoeyr... [more]
UPI00138751081.310e-735.94BON domain-containing protein n=1 Tax=Roseimaritim... [more]
A0A517ZUK1_9PLAN2.270e-735.82BON domain protein n=3 Tax=Symmachiella dynata Tax... [more]
UPI0019BE34A81.510e-535.59BON domain-containing protein n=1 Tax=Planctomycet... [more]
A0A5K7XIG1_9BACT2.480e-541.82BON domain-containing protein n=1 Tax=Lacipirellul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97309contigP-canaliculata_contig97309:512..754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.834524-CDS-P-canaliculata_contig97309:511..7541622817336.834524-CDS-P-canaliculata_contig97309:511..754Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97309 512..754 -
1693495231.5211692-CDS-P-canaliculata_contig97309:511..7541693495231.5211692-CDS-P-canaliculata_contig97309:511..754Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97309 512..754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97309.23814.1prot_P-canaliculata_contig97309.23814.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97309 512..754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97309.23814.1

>prot_P-canaliculata_contig97309.23814.1 ID=prot_P-canaliculata_contig97309.23814.1|Name=mRNA_P-canaliculata_contig97309.23814.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=81bp
MPDPQASKDQPTSVDSLRQRLREHFEKLGYPQLQSIECEVAGDTVKLTGQ
LDSFYLKQVVQSVAVKLAGSHSIENLIEVN*
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mRNA from alignment at P-canaliculata_contig97309:512..754-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97309.23814.1 ID=mRNA_P-canaliculata_contig97309.23814.1|Name=mRNA_P-canaliculata_contig97309.23814.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at P-canaliculata_contig97309:512..754- (Pelvetia canaliculata dioecious)
ATGCCTGACCCTCAAGCTTCAAAAGACCAGCCAACTTCTGTAGACTCGCT
GCGACAGCGACTTCGAGAACACTTCGAGAAGCTTGGCTATCCTCAACTTC
AGAGCATCGAATGCGAAGTGGCAGGCGACACCGTAAAGCTGACGGGCCAG
TTGGACTCTTTCTACCTCAAGCAAGTCGTTCAGTCGGTTGCCGTGAAACT
TGCCGGCTCGCACTCGATCGAAAATCTCATCGAAGTCAATTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig97309:512..754-

>mRNA_P-canaliculata_contig97309.23814.1 ID=mRNA_P-canaliculata_contig97309.23814.1|Name=mRNA_P-canaliculata_contig97309.23814.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at P-canaliculata_contig97309:512..754- (Pelvetia canaliculata dioecious)
ATGCCTGACCCTCAAGCTTCAAAAGACCAGCCAACTTCTGTAGACTCGCT
GCGACAGCGACTTCGAGAACACTTCGAGAAGCTTGGCTATCCTCAACTTC
AGAGCATCGAATGCGAAGTGGCAGGCGACACCGTAAAGCTGACGGGCCAG
TTGGACTCTTTCTACCTCAAGCAAGTCGTTCAGTCGGTTGCCGTGAAACT
TGCCGGCTCGCACTCGATCGAAAATCTCATCGAAGTCAATTGAATGCCTG
ACCCTCAAGCTTCAAAAGACCAGCCAACTTCTGTAGACTCGCTGCGACAG
CGACTTCGAGAACACTTCGAGAAGCTTGGCTATCCTCAACTTCAGAGCAT
CGAATGCGAAGTGGCAGGCGACACCGTAAAGCTGACGGGCCAGTTGGACT
CTTTCTACCTCAAGCAAGTCGTTCAGTCGGTTGCCGTGAAACTTGCCGGC
TCGCACTCGATCGAAAATCTCATCGAAGTCAATTGA
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