prot_P-canaliculata_contig973.23812.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig973.23812.1
Unique Nameprot_P-canaliculata_contig973.23812.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length634
Homology
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BLAST of mRNA_P-canaliculata_contig973.23812.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.070e-9
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0 
Query:  339 TGDPPWRATWEEGFDNESALGGGLLMSLSAMEEYEGKSHEESRLEDYARNRKNNLAVGCGPLD-GATPKS 407
            TG+P WR T  E    ++    G+L S+SAM+EYEGKSHEE R+EDY  NRKN+LAV  G    GA P S
Sbjct:  215 TGNPAWRETRAEDPTGKAGANPGMLQSISAMKEYEGKSHEELRVEDYLLNRKNSLAVTAGATAAGAAPSS 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig973.23812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE3.070e-954.29Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.2360coord: 429..476
e-value: 1.4E-7
score: 33.3
coord: 360..390
e-value: 5.0E-9
score: 38.0
coord: 600..633
e-value: 6.2E-8
score: 34.5
coord: 513..544
e-value: 3.8E-9
score: 38.4
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 527..633
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..506
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 507..526
IPR037637Nuclear pore complex protein NUP98-NUP96PANTHERPTHR23198:SF6NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96coord: 155..393
IPR037637Nuclear pore complex protein NUP98-NUP96PANTHERPTHR23198:SF6NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96coord: 419..480
coord: 504..554
IPR037637Nuclear pore complex protein NUP98-NUP96PANTHERPTHR23198:SF6NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96coord: 564..633
IPR037665Nucleoporin peptidase S59-likePANTHERPTHR23198NUCLEOPORINcoord: 564..633
IPR037665Nucleoporin peptidase S59-likePANTHERPTHR23198NUCLEOPORINcoord: 504..554
IPR037665Nucleoporin peptidase S59-likePANTHERPTHR23198NUCLEOPORINcoord: 419..480
coord: 155..393

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig973contigP-canaliculata_contig973:6230..10778 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig973.23812.1mRNA_P-canaliculata_contig973.23812.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig973 6051..11768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig973.23812.1 ID=prot_P-canaliculata_contig973.23812.1|Name=mRNA_P-canaliculata_contig973.23812.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=634bp
MPAHRTIQVSESGESESTPPPQISASPPNSPAEAFFPALASAGPTGVAIS
AANPGSYFPPTAPSSVFGSGPVSNNPFATMTTAGAPPLSNDALNPSFGMF
SPPIPPTGGGPPAGWHSVAASFATRANDLARRTLARFQGPGYVGSGASSA
NQAFNSPVAHNSTPSPSRAGSELGGFVDMEASYEQRQNRIRGASAWGSLE
PPNDLNASFGTDRAAVVGSPSSFTAAASTWALAGPACCRCPQRASSTFGT
SDLSASALMGAGAATRAMKGAPGVSDFASSSNPVTTAGAAQGSYMPSTTI
SDRCTTCGGSLSSANVSSEGLNTVGFGGWGEEGSRGLSTGDPPWRATWEE
GFDNESALGGGLLMSLSAMEEYEGKSHEESRLEDYARNRKNNLAVGCGPL
DGATPKSLPVVVDGFVFAVPSKRRGTGNPAWQATPTRDQIGSSVSMSNIM
SISAMWDYRNESHEELRLQDYTENSRGCSAKDDTDRRGEPTRQGEKRNDP
EWQETDTGAFVFVYPFLMSISAMAAYQSKSHEELRLEDYLRSREEISTDA
PSQGSSDVPEALTTTTTPAAKSSLTSAVPPQQKGTGDPAWQPLLMDVKPA
VFAQVLMSISAMQAYATMSHEELRLEYYLQNRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037637NUP98-NUP96
IPR037665Nucleoporin_S59-like