mRNA_P-canaliculata_contig9715.23798.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9715.23798.1
Unique NamemRNA_P-canaliculata_contig9715.23798.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU1_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 3.070e-24
Identity = 76/190 (40.00%), Postives = 104/190 (54.74%), Query Frame = -2
Query:    7 IHGVVQVASWSTNVNDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLYEKN----GTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYSKYDIQPQQRASPFGELP 564
            I+G + VASW     D K    Y+ N   +        +++E SG+  +      GT+ WG   +C  GP +     ++ PA+ LTN  +G V  I+EESS+YP+FLYSVW AE    DS  L ++FH+ S+ RL EA++T IVH         E  GG  F LLR FSET  +Y+     RASPFGE+P
Sbjct:  190 INGEILVASW-----DDKPSLFYDINGANV--------DSLECSGETLKDAEVYLGTDLWGNALDCERGP-RPTGLTTSPPAVVLTNGDSGLVSVIVEESSSYPTFLYSVWTAEGS--DSVELAYLFHVHSTVRLVEAVITGIVHG--------ETEGGACFGLLRVFSETRVEYE-DGLDRASPFGEIP 354          
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.230e-21
Identity = 64/153 (41.83%), Postives = 84/153 (54.90%), Query Frame = -2
Query:    7 KSGDLYEK--NGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFS-------ETYSKYDIQPQQRASPFGELP 438
            K   +Y K  N +E+WG V EC  GP   N  +   PA+ LT + T + H IIEE++T+ SFLYSVW+      DS  L + FHI S+ RLAEA+VT IV          E +GGG F +LR FS       + Y+K  ++    A PFGE P
Sbjct:  249 KDAPVYRKMNNKSEEWGRVVECEAGPRLANGGEQAQPAIILTQNGTNETHVIIEETTTFLSFLYSVWKTNG---DSVTLTYAFHIASTVRLAEAVVTGIVLG--------ESSGGGCFGMLRAFSRGPEPPEDEYAKMMVK----ALPFGENP 386          
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: A0A6H5JPI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.200e-21
Identity = 65/189 (34.39%), Postives = 90/189 (47.62%), Query Frame = -2
Query:    7 IHGVVQVASWSTNVNDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLY-EKNGTEKWGEVQECSHGPGKKNR--DDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYSKYDIQPQQRASPFGELP 564
            I G    ASWS   + + +   Y D + G   V+  +C    ++G LY     + KWG+V EC  GP   N   +D  +P + L N   G+ + I+EE S+YPSFLYSVW           L H F++ S+ RL EA+V+                GGG   +L KFS   + Y +    R SPFGE P
Sbjct:  168 IRGNTVFASWSPQSSRIASGLFY-DIDNGQAIVSEIACSTPSRTGSLYITAEESSKWGDVSECESGPSLVNASANDRASPPVILLNSTEGEAYLIVEEESSYPSFLYSVWVPGEVKPQEAQLNHAFYVSSTTRLVEAIVSGXXXXXXX--------GGGCLDMLTKFSVQNATYSLNGALRVSPFGEHP 347          
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.680e-21
Identity = 70/196 (35.71%), Postives = 97/196 (49.49%), Query Frame = -2
Query:    7 IHGVVQVASWSTNVNDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLYEKNGT---EKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKT-----DDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYS--KYDIQPQQRASPFGELP 564
            I G + VASWS    +      Y  + T +      S         +  +N T   E+WG V EC  GPG  N    + P++ LT    GD H I+EE+S +PSFLYSVW A   +     D S  + + FHI S+ RLAEA+VT IV+     G      GG  F LLR +S+     +++    ++A+PFGE P
Sbjct:  186 IDGEIIVASWSPE--EKPDSLIYGQSATVMVDGITCSSNGTRDDTTVTRRNATDHIEEWGTVLECDRGPGITNGTGKSKPSIILTAHDGGDTHVIVEETSKHPSFLYSVWNATGDSITAAGDSSVEIAYAFHIASTVRLAEAVVTGIVNGVAGGG------GGACFGLLRAYSKGSDTPEFEEYGTEKATPFGEDP 373          
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D7FRT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.530e-20
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = -2
Query:    7 KNGT---EKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKT------DDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFS----ETYSKYDIQPQQRASPFGELP 417
            KNGT   E WG V EC  GP   +   S+ P++ LT  +TGD H I+EE+S+ PSFLYSVW A   +      + S  + + FHI S+ RLAEA+VT IV+     G      GG  F LLR ++    +T    D   +Q+A PFGE P
Sbjct:  235 KNGTDAIEVWGTVLECDQGPAGIDVIGSSKPSIILTERETGDTHVIVEETSSEPSFLYSVWNATGASITAAAGNSSVEIAYAFHISSTVRLAEAVVTAIVNGVAGEG------GGACFGLLRAYNRGPYDTVDFSDSYGKQKAMPFGEDP 378          
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: A0A6H5JST2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.570e-20
Identity = 70/199 (35.18%), Postives = 99/199 (49.75%), Query Frame = -2
Query:    7 IHGVVQVASWSTNV---------NDLKTRNSYNDNETGITHVTNHSCEAVEKSGDLYEK--NGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSETYSKYDIQPQQ--RASPFGELP 564
            I G + VA+W   +          ++ +R+      T +    + S     K   +Y K  N +E+WG V EC  GP   N  +   PA+ LT   T + H IIEE++T+ SFLYSVW+      +S  L + FHI S+ RLAEA+VT IV          E TGGG F +LR FS   +  + +  +  +A PFGE P
Sbjct:  198 ISGDIIVANWDPAIAGSLNFFFGENILSRSYEEKTATAVVEAVDCSSSGRLKDAPVYRKINNKSEEWGRVVECEVGPRLPNGSEQAQPAIILTQHGTNETHVIIEETTTFLSFLYSVWKTNG---ESVNLSYAFHIASTVRLAEAVVTGIVLG--------ESTGGGCFGMLRAFSRGPNPPEDEYGEMIKALPFGENP 385          
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: A0A6H5JMP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.590e-20
Identity = 76/206 (36.89%), Postives = 104/206 (50.49%), Query Frame = -2
Query:    7 IHGVVQVASWSTNVNDLKTRNS-YNDNETGITHVTNHSCEAVEKSGD---------LYEKNGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKT------DDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFSE-TYSKYDIQP---QQRASPFGELP 564
            I+G + VA+WS N    K  N  Y +N T +  V   +C +  K+           L   NG E+WG V EC  GP       ++ P++ LT  +TGD H I+EE+S+ PSFLYSVW A   +      + S  + + FHI S+ RLAEA+VT IV+     G      GG  F LLR ++   Y   D      +Q+A PFGE P
Sbjct:  183 INGDIIVANWSRNT---KPDNLVYGENATVM--VDGITCSSGGKAQTFTDDPIPVTLNRTNGIEEWGTVLECDQGPAVVEVIGNSKPSIILTERETGDTHVIVEETSSEPSFLYSVWNATGASITAAAGNSSVEIAYAFHISSTVRLAEAVVTAIVNGVAGDG------GGACFGLLRAYNRGPYDTRDFSALYGKQKARPFGEDP 377          
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Match: D8LC87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC87_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.610e-15
Identity = 72/193 (37.31%), Postives = 96/193 (49.74%), Query Frame = -2
Query:    7 IHGVVQVASWSTNVNDLKTRNS--YNDNETGITHVTNHSCEAVEKSGDLYEKNGTEKWGEVQECSHGPGKKNRDDSTAPALKLTNDKTGDVHFIIEESSTYPSFLYSVWRAENKTDDSTFLRHVFHILSSARLAEALVTEIVHASQRRGDSKEPTGGGAFALLRKFS-----ETYSKYDIQPQQRASPFGELP 564
            + G + VASW     D K R    Y  N T    V + +C+     GD+Y  +    WG    C  GP  +N+  S+ P + L   + G+V  I+EE  T+PSFLYSVW A +   DS  L + FHI S+ RLAEA+VT IV+         E  GG  F LLR F+     E       + ++RA PFGE P
Sbjct:  183 VDGEIVVASWDP---DDKHRAGLYYGSNHTAT--VDSITCKGT--GGDVYLYDEAA-WGSFLWCGEGPLAENKT-SSQPVIILEKSE-GEVSVIVEEVGTHPSFLYSVWTAGSA--DSKELAYSFHISSTVRLAEAVVTGIVNG--------ETGGGPCFGLLRTFNAGRDMEEGISTGEEERERAKPFGEKP 355          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9715.23798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FRU1_ECTSI3.070e-2440.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRT6_ECTSI6.230e-2141.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPI8_9PHAE8.200e-2134.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRU0_ECTSI8.680e-2135.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRT9_ECTSI1.530e-2042.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JST2_9PHAE1.570e-2035.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMP8_9PHAE1.590e-2036.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC87_ECTSI3.610e-1537.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9715contigP-canaliculata_contig9715:4137..4710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9715.23798.1prot_P-canaliculata_contig9715.23798.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9715 4329..4676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.6716774-UTR-P-canaliculata_contig9715:4136..43281622817335.6716774-UTR-P-canaliculata_contig9715:4136..4328Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9715 4137..4328 +
1693495230.741686-UTR-P-canaliculata_contig9715:4136..43281693495230.741686-UTR-P-canaliculata_contig9715:4136..4328Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9715 4137..4328 +
1622817335.6938877-UTR-P-canaliculata_contig9715:4676..47101622817335.6938877-UTR-P-canaliculata_contig9715:4676..4710Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9715 4677..4710 +
1693495230.7649746-UTR-P-canaliculata_contig9715:4676..47101693495230.7649746-UTR-P-canaliculata_contig9715:4676..4710Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9715 4677..4710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.682695-CDS-P-canaliculata_contig9715:4328..46761622817335.682695-CDS-P-canaliculata_contig9715:4328..4676Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9715 4329..4676 +
1693495230.7537131-CDS-P-canaliculata_contig9715:4328..46761693495230.7537131-CDS-P-canaliculata_contig9715:4328..4676Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9715 4329..4676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9715.23798.1

>prot_P-canaliculata_contig9715.23798.1 ID=prot_P-canaliculata_contig9715.23798.1|Name=mRNA_P-canaliculata_contig9715.23798.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=116bp
MEDVSQEGRVVGLVFGPPDGVQEAWIGTAFFDDEVNVACFIIGELQRGRS
GVVTVLLPWPVAALLDLSPLLCPVFLVEIAGLLNCFTAVVCNVGNARLII
IIGISGLQVVDVSTP*
back to top

mRNA from alignment at P-canaliculata_contig9715:4137..4710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9715.23798.1 ID=mRNA_P-canaliculata_contig9715.23798.1|Name=mRNA_P-canaliculata_contig9715.23798.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=574bp|location=Sequence derived from alignment at P-canaliculata_contig9715:4137..4710+ (Pelvetia canaliculata dioecious)
ATCTCTTGGAAGCTCCCCAAAAGGAGACGCTCGTTGCTGTGGTTGGATAT CATACTTGGAGTAGGTTTCGCTGAACTTTCGAAGCAACGCAAAAGCGCCA CCTCCGGTGGGTTCCTTTGAGTCTCCTCTTCTTTGTGATGCATGTACGAT CTCGGTAACTAACGCCTCCGCGAGCCTTGCAGACGACAAGATATGGAAGA CGTGTCTCAGGAAGGTCGAGTCGTCGGTCTTGTTTTCGGCCCTCCAGACG GAGTACAGGAAGCTTGGATAGGTACTGCTTTCTTCGATGATGAAGTGAAC GTCGCCTGTTTTATCATTGGTGAGCTTCAACGCGGGCGCAGTGGAGTCGT CACGGTTCTTCTTCCCTGGCCCGTGGCTGCACTCTTGGACCTCTCCCCAC TTCTCTGTCCCGTTTTTCTCGTAGAGATCGCCGGACTTCTCAACTGCTTC ACAGCTGTGGTTTGTAACGTGGGTAATGCCCGTCTCATTATCATTATAGG AATTTCTGGTCTTCAAGTCGTTGACGTTAGTACTCCATGAAGCGACTTGT ACGACTCCATGGATCTTCTCCGAG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9715:4137..4710+

>mRNA_P-canaliculata_contig9715.23798.1 ID=mRNA_P-canaliculata_contig9715.23798.1|Name=mRNA_P-canaliculata_contig9715.23798.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at P-canaliculata_contig9715:4137..4710+ (Pelvetia canaliculata dioecious)
ATGGAAGACGTGTCTCAGGAAGGTCGAGTCGTCGGTCTTGTTTTCGGCCC
TCCAGACGGAGTACAGGAAGCTTGGATAGGTACTGCTTTCTTCGATGATG
AAGTGAACGTCGCCTGTTTTATCATTGGTGAGCTTCAACGCGGGCGCAGT
GGAGTCGTCACGGTTCTTCTTCCCTGGCCCGTGGCTGCACTCTTGGACCT
CTCCCCACTTCTCTGTCCCGTTTTTCTCGTAGAGATCGCCGGACTTCTCA
ACTGCTTCACAGCTGTGGTTTGTAACGTGGGTAATGCCCGTCTCATTATC
ATTATAGGAATTTCTGGTCTTCAAGTCGTTGACGTTAGTACTCCATGAAT
GGAAGACGTGTCTCAGGAAGGTCGAGTCGTCGGTCTTGTTTTCGGCCCTC
CAGACGGAGTACAGGAAGCTTGGATAGGTACTGCTTTCTTCGATGATGAA
GTGAACGTCGCCTGTTTTATCATTGGTGAGCTTCAACGCGGGCGCAGTGG
AGTCGTCACGGTTCTTCTTCCCTGGCCCGTGGCTGCACTCTTGGACCTCT
CCCCACTTCTCTGTCCCGTTTTTCTCGTAGAGATCGCCGGACTTCTCAAC
TGCTTCACAGCTGTGGTTTGTAACGTGGGTAATGCCCGTCTCATTATCAT
TATAGGAATTTCTGGTCTTCAAGTCGTTGACGTTAGTACTCCATGA
back to top