mRNA_P-canaliculata_contig97.23762.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97.23762.1
Unique NamemRNA_P-canaliculata_contig97.23762.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: A0A6A6PT33_9PEZI (CTLH/CRA C-terminal to lish motif domain-containing protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PT33_9PEZI)

HSP 1 Score: 315 bits (808), Expect = 3.760e-104
Identity = 168/237 (70.89%), Postives = 197/237 (83.12%), Query Frame = 2 
Query:  269 TMSSSPSFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRN-AERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDDEMNED 976
            TM +S +F   VE+MKPSKSDINW+IMDYLVSEGYPGAAEKFAQET+LC  A ++ IRERV+IR AIH G V+ AI L+N+ DA+ILD+DSLLHF LLQLQLIEIIR IL  N + +++ A DFLPAIQFATEQ+SPRAPTD  YQ ALE+TMALMIF  +KM  EFR+LLDV LRE+VA++VNKA+L ARGERAEAKI+QL+RARAWAE   R+AKAD+P  IPIGL V DEMN D
Sbjct:   15 TMRASGNFDKSVEEMKPSKSDINWLIMDYLVSEGYPGAAEKFAQETNLCPAATVETIRERVKIRTAIHAGKVEEAIELINDADAEILDNDSLLHFQLLQLQLIEIIRGILANNPSSQNIPAQDFLPAIQFATEQLSPRAPTDVNYQRALENTMALMIFQPEKMPQEFRELLDVRLREKVATDVNKAILSARGERAEAKIKQLIRARAWAEVQAREAKADLPAHIPIGLDVADEMNGD 251
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: M2MY93_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2MY93_BAUPA)

HSP 1 Score: 306 bits (783), Expect = 2.560e-100
Identity = 163/241 (67.63%), Postives = 193/241 (80.08%), Query Frame = 2 
Query:  248 ILSST---ARTMSSSPSFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDD 961
            ILSST   A TM  S SF  KVE+MKPSKSDINWVIMDYLVSEGYPGAAEKFAQET++  P D + IRERVRIRNAIH G +  AI ++NE+D +ILD++ LLHF LLQL LIEIIR IL+  +  +  A DFLPAI+FATEQ+SPRAPTDP YQ ALE TMALMIFP +KM PEF++LLDV LRE+VA EVNKA+L +RG+R+EAKIRQL+RARAWAE   R AK ++P  +P+GL  +D
Sbjct:    3 ILSSTGPAASTMRGSHSFDRKVEEMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETNMASPVDNESIRERVRIRNAIHGGRIDEAIEMINEIDPEILDTNPLLHFHLLQLHLIEIIRAILSAPSGANPIATDFLPAIKFATEQLSPRAPTDPTYQQALERTMALMIFPPEKMTPEFKELLDVRLREKVAGEVNKAVLESRGQRSEAKIRQLIRARAWAEGEARAAKVELPAFVPVGLDAED 243
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: A0A1Z5TK96_HORWE (Uncharacterized protein n=16 Tax=Hortaea werneckii TaxID=91943 RepID=A0A1Z5TK96_HORWE)

HSP 1 Score: 302 bits (774), Expect = 6.100e-99
Identity = 163/252 (64.68%), Postives = 197/252 (78.17%), Query Frame = 2 
Query:  254 SSTARTMSSSPSFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDDEMNE-----DVDSMIT 994
            S+ + TM     +  KVE+MKPSKSDINWVIMDYLVSEGYP AAEKFAQET+L  P D + IRERVR+R AIH G+V+ AI ++NE+D +ILD++ LLHF LLQLQLIEIIR IL R+   +  + DFLPAI+FAT Q+SPRAPTDP YQ ALE TMALMIFP DKMAPEF++LLDV LRE +ASEVNKA+L +RGER+EAKIRQLVRARAWAE   R AK D+PP +PIGL  ++  +      D D+M++
Sbjct:    9 STFSATMRGQQLWDRKVEEMKPSKSDINWVIMDYLVSEGYPAAAEKFAQETNLPGPVDHESIRERVRVRTAIHSGNVKEAIQMVNEIDPEILDTNHLLHFHLLQLQLIEIIRDILTRS-NGNPASTDFLPAIEFATNQLSPRAPTDPVYQQALERTMALMIFPSDKMAPEFKELLDVKLRENIASEVNKAILESRGERSEAKIRQLVRARAWAETEARSAKVDMPPCLPIGLEAEEGAHNGGVPSDGDAMVS 259
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: A0A3M6W3A5_HORWE (Uncharacterized protein n=1 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M6W3A5_HORWE)

HSP 1 Score: 302 bits (774), Expect = 1.900e-95
Identity = 159/235 (67.66%), Postives = 189/235 (80.43%), Query Frame = 2 
Query:  254 SSTARTMSSSPSFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVD 958
            S+ + TM     +  KVE+MKPSKSDINWVIMDYLVSEGYP AAEKFAQET+L  P D + IRERVR+R AIH G+V+ AI ++NE+D +ILD++ LLHF LLQLQLIEIIR IL R+   +  + DFLPAI+FAT Q+SPRAPTDP YQ ALE TMALMIFP DKMAPEF++LLDV LRE +ASEVNKA+L +RGER+EAKIRQLVRAR WAE   R AK D+PP++PIGL  +
Sbjct:    9 STFSATMRGQQMWDRKVEEMKPSKSDINWVIMDYLVSEGYPAAAEKFAQETNLPGPVDHESIRERVRVRTAIHSGNVKEAIQMVNEIDPEILDTNHLLHFHLLQLQLIEIIRDILTRS-NGNPASTDFLPAIEFATNQLSPRAPTDPVYQQALERTMALMIFPSDKMAPEFKELLDVKLRENIASEVNKAILESRGERSEAKIRQLVRARTWAETEARSAKVDMPPELPIGLEAE 242
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: F9XJU4_ZYMTI (Uncharacterized protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XJU4_ZYMTI)

HSP 1 Score: 288 bits (738), Expect = 8.160e-94
Identity = 152/235 (64.68%), Postives = 184/235 (78.30%), Query Frame = 2 
Query:  290 FAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDDEMNEDVDSMIT 994
            F  KVE+MKPSKSDINWVIMDYLVSEGYPGAA KFAQET++ QP D DGIR+RV+IR+AIH G +  AI L+NE+D QILD+D +LHF LLQLQLIEIIR+ILN+    +  + +F PA++FATEQ+SPRAPTD +YQ ALE TMALMIFP DKM  EF+ LLD+ LRE VA  VN+A+L ++G+R EAKIRQLVRARAWAE   R+AK  +P  +PIGL    +   D D M+T
Sbjct:    7 FEQKVEEMKPSKSDINWVIMDYLVSEGYPGAAAKFAQETNISQPFDTDGIRDRVQIRSAIHAGKIDEAIDLINELDPQILDTDHILHFDLLQLQLIEIIRSILNKPDGGNPQSSEFRPALEFATEQLSPRAPTDQKYQQALERTMALMIFPPDKMTAEFKVLLDLKLRETVADSVNEAILNSKGQRPEAKIRQLVRARAWAEMQAREAKVQLPETLPIGL----DGPVDGDPMVT 237
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: A0A4U0UE40_9PEZI (Uncharacterized protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0UE40_9PEZI)

HSP 1 Score: 300 bits (767), Expect = 1.760e-93
Identity = 160/240 (66.67%), Postives = 190/240 (79.17%), Query Frame = 2 
Query:  272 MSSSPSFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDDEMNEDVDSMI 991
            M S   + ++VEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQET+L  P + + I ERVR+R AIH G ++ AI ++NE D +ILD++ LLHF LLQLQLIEIIR IL +         DFLPAI+FAT Q+SPRAPTDP YQ ALE TMALMIFP +KMAPEF++LLDV LRE+VAS+VNKA+L +RGE++EAKIRQLVRARAWAE   R A+ D+P  IPIGL VDD  N D D+M+
Sbjct:    1 MRSQNKWDSQVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETNLPGPVENESIWERVRVRTAIHSGKIKEAIQMVNEADPEILDTNHLLHFHLLQLQLIEIIRGILAKPGGNPAST-DFLPAIEFATSQLSPRAPTDPVYQQALERTMALMIFPPEKMAPEFKELLDVRLREKVASDVNKAILESRGEQSEAKIRQLVRARAWAEVEARSARVDMPAHIPIGLDVDDSANGDGDAML 239
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: A0A6A6C6V4_9PEZI (Uncharacterized protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6C6V4_9PEZI)

HSP 1 Score: 285 bits (730), Expect = 1.520e-92
Identity = 145/220 (65.91%), Postives = 181/220 (82.27%), Query Frame = 2 
Query:  290 FAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGL 949
            F  KVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQET++C P D+  IR+RV+IR AIH G V  A+ ++NE+D +ILD+D LLHF+LLQLQLIEIIR IL++    ++ + +F PA+QFATEQ++PRAPTD +YQ ALE TMALMIFP +KM PEF++LLD+ LRE VA+ VN+A+L +RG+R+EAKIRQLVRARAWAE    +AK ++P  I +GL
Sbjct:    7 FDRKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETNICNPTDMGDIRDRVQIRKAIHDGKVDEAVEMINELDPEILDTDHLLHFNLLQLQLIEIIRGILDKPG--TIQSSEFRPALQFATEQLAPRAPTDQKYQQALERTMALMIFPPEKMTPEFKELLDLKLRETVANSVNRAILESRGQRSEAKIRQLVRARAWAEDQANEAKIELPNHIAVGL 224
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: A0A2I0RTV0_9PEZI (Glucose-induced degradation protein 8-like protein n=6 Tax=Cercospora TaxID=29002 RepID=A0A2I0RTV0_9PEZI)

HSP 1 Score: 286 bits (731), Expect = 1.550e-92
Identity = 155/246 (63.01%), Postives = 189/246 (76.83%), Query Frame = 2 
Query:  257 STARTMSSSPSFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMD-FLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDDEMNEDVDSMI 991
            S   TM  + SF AKVE+ KPSKSDINWVIMDYLVSEGYP AAEKFAQET+L  P D++ IRERV +RNAIH G V+ AI L+NE+D QILD + LLHF+LLQLQLIE+IR I+ R A+      D F PA+ FATEQ++P+APTD +YQ AL+ TMALMIFP DKM  EF++LLD+ LRE+VA+ VNKA+L +RG+R+EAKIR+LVR RAWAE   R+AKAD+P  IPIGL   D      D+M+
Sbjct:    6 SAPSTMRPAHSFDAKVEEKKPSKSDINWVIMDYLVSEGYPAAAEKFAQETNLGNPEDMESIRERVAVRNAIHAGRVEEAIELINEIDHQILDQNQLLHFNLLQLQLIELIRGIIIRPADGPQPTSDDFRPALDFATEQLAPKAPTDAKYQEALQRTMALMIFPPDKMQQEFKELLDLRLREKVATSVNKAILESRGQRSEAKIRKLVRGRAWAEALAREAKADLPATIPIGLDGPDTAPTAGDAMV 251
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: N1QFW1_SPHMS (Uncharacterized protein n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=N1QFW1_SPHMS)

HSP 1 Score: 284 bits (727), Expect = 4.470e-92
Identity = 148/236 (62.71%), Postives = 188/236 (79.66%), Query Frame = 2 
Query:  287 SFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMD-FLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDDEMNEDVDSMI 991
            SF AKV++ KPSKSDINWVIMDYLVSEGYP AAEKFAQET+L  P D++ IRERV +R+A+H G V+ AI L+NE+D QILD D LLHF+LLQLQLIE+IR+I+ R    +  A D F PA++FATEQ++P+APT+ +YQ AL+ TMALMIF  +KM PEF++LLD+ LRERVA+ VNKA+L +RG+R+EAKIR+LVR RAWAE   R++KA+IP  IPIGL   D +    D+M+
Sbjct:    6 SFDAKVDEKKPSKSDINWVIMDYLVSEGYPAAAEKFAQETNLGSPDDLESIRERVAVRDALHSGKVEEAIALINEIDHQILDQDQLLHFNLLQLQLIELIRSIIIRPTNSTTPASDEFRPALEFATEQLAPKAPTEAKYQEALQRTMALMIFSPEKMQPEFKELLDLRLRERVATSVNKAILQSRGQRSEAKIRKLVRGRAWAENLARESKAEIPLSIPIGLDGADTVQVTGDAMV 241
[Close]
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Match: A0A4U0UD04_9PEZI (Uncharacterized protein n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UD04_9PEZI)

HSP 1 Score: 285 bits (728), Expect = 6.600e-92
Identity = 150/225 (66.67%), Postives = 182/225 (80.89%), Query Frame = 2 
Query:  323 KSDINWVIMDYLVSEGYPGAAEKFAQETDLCQPADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQLIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHTMALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQLVRARAWAERHGRDAKADIPPQIPIGLHVDDEMNE-DVDSMIT 994
            KSDINWVIMDYLVSEGYPGAAEKFAQET+L  P D + IRERVR+RNAIH G +  AI L+NE+D +ILD++ LLHF LLQLQLIEIIRT+L +    S  A DFLPAI+FATEQ+SPRAPTDP+YQ ALE TMALMIFP +KM PEF++LLD  LR +VA EVN+A+L +RGER+EAKIRQL++ARAWAE+  R AK D+P  +P+GL   DE+   D D+M++
Sbjct:   41 KSDINWVIMDYLVSEGYPGAAEKFAQETNLPGPVDNESIRERVRVRNAIHGGRLDEAIELINEIDPEILDNNHLLHFHLLQLQLIEIIRTVLAKPGS-SPAATDFLPAIKFATEQLSPRAPTDPKYQQALERTMALMIFPPEKMTPEFKELLDEELRRKVAVEVNRAILESRGERSEAKIRQLIKARAWAEQEARAAKVDLPAYVPLGLDAADEVGGVDGDAMVS 264
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97.23762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6PT33_9PEZI3.760e-10470.89CTLH/CRA C-terminal to lish motif domain-containin... [more]
M2MY93_BAUPA2.560e-10067.63Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
A0A1Z5TK96_HORWE6.100e-9964.68Uncharacterized protein n=16 Tax=Hortaea werneckii... [more]
A0A3M6W3A5_HORWE1.900e-9567.66Uncharacterized protein n=1 Tax=Hortaea werneckii ... [more]
F9XJU4_ZYMTI8.160e-9464.68Uncharacterized protein n=5 Tax=Zymoseptoria TaxID... [more]
A0A4U0UE40_9PEZI1.760e-9366.67Uncharacterized protein n=1 Tax=Salinomyces thaila... [more]
A0A6A6C6V4_9PEZI1.520e-9265.91Uncharacterized protein n=1 Tax=Zasmidium cellare ... [more]
A0A2I0RTV0_9PEZI1.550e-9263.01Glucose-induced degradation protein 8-like protein... [more]
N1QFW1_SPHMS4.470e-9262.71Uncharacterized protein n=1 Tax=Sphaerulina musiva... [more]
A0A4U0UD04_9PEZI6.600e-9266.67Uncharacterized protein n=1 Tax=Friedmanniomyces e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97contigP-canaliculata_contig97:29838..31366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score301.6
Seed ortholog evalue3.3e-79
Seed eggNOG ortholog430998.XP_007681141.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.CT11-RanBPM
EggNOG OGs201D6@147541,396D9@33154,3MJXZ@451867,3P02Y@4751,3QJZB@4890,KOG2659@1,KOG2659@2759
COG Functional cat.Z
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1080
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97.23762.1prot_P-canaliculata_contig97.23762.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97 30109..31283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817332.290514-UTR-P-canaliculata_contig97:29837..301081622817332.290514-UTR-P-canaliculata_contig97:29837..30108Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 29838..30108 +
1693495229.2631395-UTR-P-canaliculata_contig97:29837..301081693495229.2631395-UTR-P-canaliculata_contig97:29837..30108Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 29838..30108 +
1622817332.3391988-UTR-P-canaliculata_contig97:31283..313661622817332.3391988-UTR-P-canaliculata_contig97:31283..31366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 31284..31366 +
1693495229.320298-UTR-P-canaliculata_contig97:31283..313661693495229.320298-UTR-P-canaliculata_contig97:31283..31366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 31284..31366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817332.3043256-CDS-P-canaliculata_contig97:30108..301641622817332.3043256-CDS-P-canaliculata_contig97:30108..30164Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 30109..30164 +
1693495229.2792263-CDS-P-canaliculata_contig97:30108..301641693495229.2792263-CDS-P-canaliculata_contig97:30108..30164Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 30109..30164 +
1622817332.3170328-CDS-P-canaliculata_contig97:30419..306151622817332.3170328-CDS-P-canaliculata_contig97:30419..30615Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 30420..30615 +
1693495229.2919657-CDS-P-canaliculata_contig97:30419..306151693495229.2919657-CDS-P-canaliculata_contig97:30419..30615Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 30420..30615 +
1622817332.3286662-CDS-P-canaliculata_contig97:30809..312831622817332.3286662-CDS-P-canaliculata_contig97:30809..31283Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 30810..31283 +
1693495229.3037055-CDS-P-canaliculata_contig97:30809..312831693495229.3037055-CDS-P-canaliculata_contig97:30809..31283Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 30810..31283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97.23762.1

>prot_P-canaliculata_contig97.23762.1 ID=prot_P-canaliculata_contig97.23762.1|Name=mRNA_P-canaliculata_contig97.23762.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=242bp
MSSSPSFAAKVEDMKPSKSDINWVIMDYLVSEGYPGAAEKFAQETDLCQP
ADIDGIRERVRIRNAIHQGDVQAAIGLLNEVDAQILDSDSLLHFSLLQLQ
LIEIIRTILNRNAERSVGAMDFLPAIQFATEQISPRAPTDPQYQSALEHT
MALMIFPEDKMAPEFRKLLDVNLRERVASEVNKAMLLARGERAEAKIRQL
VRARAWAERHGRDAKADIPPQIPIGLHVDDEMNEDVDSMIT*
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mRNA from alignment at P-canaliculata_contig97:29838..31366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97.23762.1 ID=mRNA_P-canaliculata_contig97.23762.1|Name=mRNA_P-canaliculata_contig97.23762.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1529bp|location=Sequence derived from alignment at P-canaliculata_contig97:29838..31366+ (Pelvetia canaliculata dioecious)
CATCTTTTCGTTCCGATTCAGTGACTGCCGTGACTTGACTGTCTGCTGCT
CAGTGCATTTCAAGCCTTGAAGGCATGGTCGCATCGACGTTGTGCGCTCT
GTCGACCACAGTGATGCGCTCAATTGCCTGAAGTTGCCTGGGGAAAACTC
TGCGCACCTTCGCGGAACGGGGTATCCGTTGCGGCTGCACACGGGATCAA
ATCTGAACCTCAACCGACTTGACAAGCAGGCCTTATACAAGTTTTTTATT
CTCTCTTCAACAGCACGAACCATGTCCTCCTCGCCCTCCTTTGCGGCGAA
GGTGGAAGACATGAAGCCGAGCAAAAGGTACGTCTCCCGGCGACTTTTTG
GGCTCATCCCTTTCAAAACGGCTGTGTCTGGTGCTTCTTGGGTCTTACGC
TGTGATGATTCAACAAGTTGGGAATCTCTCTGCAATCATCTTGAAGAGAC
AACAAACTTGAATATCTGAGCACACCTGAATGTCATTGTGCTCCCATTTG
GGCGCAATCTAAAGGCTGCTTCGCCATGATGTGATGCGAATGCCCGGCGA
GAACCATTAGCTAATGCGAAATCTGATCGTAGTGACATCAACTGGGTCAT
TATGGACTACTTGGTGTCCGAGGGATATCCAGGCGCCGCGGAAAAGTTTG
CCCAGGAAACAGACTTGTGTCAGCCGGCAGATATCGACGGCATTCGAGAA
CGAGTGCGGATTCGCAATGCCATTCACCAGGGCGACGTCCAGGCGGCTAT
CGGTCTACTGAACGAAGTTGATGCTCAAGTAAGTGCCATCCTTGCCTTCT
GTATCTCGAAATGATTACATACCGTTATCATGCACCACTCATATCCACTC
CACTCGTGGGGTGTTGATGATGCAAACTCACACTTCAGTCCTCAGTATGA
TACAAACTCGACTCCGTTTTTCGAATGCATTGCAATGAATGACAACGACT
CCATGCTGATGAAACTCGCCAGATCCTCGATAGTGATTCCCTACTTCACT
TCTCGCTGCTTCAACTTCAACTGATTGAAATCATTCGCACGATCCTGAAC
AGAAACGCTGAGCGGTCTGTTGGGGCGATGGATTTTCTGCCCGCCATCCA
ATTTGCCACCGAGCAAATTTCGCCTCGCGCGCCCACTGATCCGCAATACC
AATCCGCTCTAGAGCACACCATGGCGCTCATGATCTTCCCCGAAGACAAG
ATGGCGCCAGAGTTCCGGAAGCTACTGGACGTCAACCTTCGCGAGAGGGT
TGCTAGTGAAGTAAACAAAGCTATGTTATTGGCAAGGGGGGAGCGAGCTG
AGGCAAAGATTCGTCAGCTGGTCAGGGCACGAGCTTGGGCAGAGCGCCAC
GGCAGAGATGCCAAAGCCGATATCCCGCCACAAATACCAATCGGCCTGCA
TGTGGATGACGAGATGAACGAAGACGTCGATTCAATGATTACTTGAGGCA
CAAAGAGGGCGACAAACTGAAACTTGCGCTTCAATTTGATGTTGAGTGGG
CCAACGTCAGTTCCCGCAATGCCAACCGT
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Coding sequence (CDS) from alignment at P-canaliculata_contig97:29838..31366+

>mRNA_P-canaliculata_contig97.23762.1 ID=mRNA_P-canaliculata_contig97.23762.1|Name=mRNA_P-canaliculata_contig97.23762.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at P-canaliculata_contig97:29838..31366+ (Pelvetia canaliculata dioecious)
ATGTCCTCCTCGCCCTCCTTTGCGGCGAAGGTGGAAGACATGAAGCCGAG
CAAAAGATGTCCTCCTCGCCCTCCTTTGCGGCGAAGGTGGAAGACATGAA
GCCGAGCAAAAGTGACATCAACTGGGTCATTATGGACTACTTGGTGTCCG
AGGGATATCCAGGCGCCGCGGAAAAGTTTGCCCAGGAAACAGACTTGTGT
CAGCCGGCAGATATCGACGGCATTCGAGAACGAGTGCGGATTCGCAATGC
CATTCACCAGGGCGACGTCCAGGCGGCTATCGGTCTACTGAACGAAGTTG
ATGCTCAATGACATCAACTGGGTCATTATGGACTACTTGGTGTCCGAGGG
ATATCCAGGCGCCGCGGAAAAGTTTGCCCAGGAAACAGACTTGTGTCAGC
CGGCAGATATCGACGGCATTCGAGAACGAGTGCGGATTCGCAATGCCATT
CACCAGGGCGACGTCCAGGCGGCTATCGGTCTACTGAACGAAGTTGATGC
TCAAATCCTCGATAGTGATTCCCTACTTCACTTCTCGCTGCTTCAACTTC
AACTGATTGAAATCATTCGCACGATCCTGAACAGAAACGCTGAGCGGTCT
GTTGGGGCGATGGATTTTCTGCCCGCCATCCAATTTGCCACCGAGCAAAT
TTCGCCTCGCGCGCCCACTGATCCGCAATACCAATCCGCTCTAGAGCACA
CCATGGCGCTCATGATCTTCCCCGAAGACAAGATGGCGCCAGAGTTCCGG
AAGCTACTGGACGTCAACCTTCGCGAGAGGGTTGCTAGTGAAGTAAACAA
AGCTATGTTATTGGCAAGGGGGGAGCGAGCTGAGGCAAAGATTCGTCAGC
TGGTCAGGGCACGAGCTTGGGCAGAGCGCCACGGCAGAGATGCCAAAGCC
GATATCCCGCCACAAATACCAATCGGCCTGCATGTGGATGACGAGATGAA
CGAAGACGTCGATTCAATGATTACTTGAATCCTCGATAGTGATTCCCTAC
TTCACTTCTCGCTGCTTCAACTTCAACTGATTGAAATCATTCGCACGATC
CTGAACAGAAACGCTGAGCGGTCTGTTGGGGCGATGGATTTTCTGCCCGC
CATCCAATTTGCCACCGAGCAAATTTCGCCTCGCGCGCCCACTGATCCGC
AATACCAATCCGCTCTAGAGCACACCATGGCGCTCATGATCTTCCCCGAA
GACAAGATGGCGCCAGAGTTCCGGAAGCTACTGGACGTCAACCTTCGCGA
GAGGGTTGCTAGTGAAGTAAACAAAGCTATGTTATTGGCAAGGGGGGAGC
GAGCTGAGGCAAAGATTCGTCAGCTGGTCAGGGCACGAGCTTGGGCAGAG
CGCCACGGCAGAGATGCCAAAGCCGATATCCCGCCACAAATACCAATCGG
CCTGCATGTGGATGACGAGATGAACGAAGACGTCGATTCAATGATTACTT
GA
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