mRNA_P-canaliculata_contig97.23770.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97.23770.1
Unique NamemRNA_P-canaliculata_contig97.23770.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97.23770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97contigP-canaliculata_contig97:47414..47926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97.23770.1prot_P-canaliculata_contig97.23770.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97 47414..47724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.353834-CDS-P-canaliculata_contig97:47413..474421622817331.353834-CDS-P-canaliculata_contig97:47413..47442Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 47414..47442 -
1693495228.6654484-CDS-P-canaliculata_contig97:47413..474421693495228.6654484-CDS-P-canaliculata_contig97:47413..47442Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 47414..47442 -
1622817331.3656065-CDS-P-canaliculata_contig97:47537..477241622817331.3656065-CDS-P-canaliculata_contig97:47537..47724Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 47538..47724 -
1693495228.6760292-CDS-P-canaliculata_contig97:47537..477241693495228.6760292-CDS-P-canaliculata_contig97:47537..47724Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 47538..47724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.3765914-UTR-P-canaliculata_contig97:47724..479261622817331.3765914-UTR-P-canaliculata_contig97:47724..47926Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 47725..47926 -
1693495228.6866055-UTR-P-canaliculata_contig97:47724..479261693495228.6866055-UTR-P-canaliculata_contig97:47724..47926Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 47725..47926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97.23770.1

>prot_P-canaliculata_contig97.23770.1 ID=prot_P-canaliculata_contig97.23770.1|Name=mRNA_P-canaliculata_contig97.23770.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=72bp
MGTRGEPERRPRALTLELIREPEDVAPSTPSPSTSSSMDVGGGGGGGAGG
GAIADGSGGAGDGSYHPRHHLI
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mRNA from alignment at P-canaliculata_contig97:47414..47926-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97.23770.1 ID=mRNA_P-canaliculata_contig97.23770.1|Name=mRNA_P-canaliculata_contig97.23770.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at P-canaliculata_contig97:47414..47926- (Pelvetia canaliculata dioecious)
CTCCCTGTCGCCTTTTCCACACTCATCGTGGCTGGGTACTCACTTTCCCG
CTTCCCACCATGACATTGACAGCTCCACTGGCGTGAATAACCCCCAACAC
GTCCACCCTCATCATCCTGGGTACTCACTTTCCCGCCTCCCACCATGACA
TTGACAGCTCCACTGGCGTGAATAACCCCCAACACGTCCACCCTCATCAT
CAATGGGCACGCGTGGTGAACCCGAACGACGTCCTAGGGCTTTGACACTT
GAGCTGATCCGCGAGCCCGAGGACGTAGCCCCATCTACGCCTTCTCCATC
CACTTCGTCATCGATGGATGTCGGCGGCGGCGGCGGCGGCGGCGCTGGTG
GAGGAGCAATCGCCGACGGAAGTGGAGGTGCCGGTGATGGTAACTTTTCC
CCCCCTATTTTTCACTTTTGTCTCTATGTCTTCCCGTCGACGTGTCTTGC
ACCCACCAGACCCCCTGACACATGGGACGGCCAGGCTCCTATCACCCCCG
TCATCATCTGATC
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Coding sequence (CDS) from alignment at P-canaliculata_contig97:47414..47926-

>mRNA_P-canaliculata_contig97.23770.1 ID=mRNA_P-canaliculata_contig97.23770.1|Name=mRNA_P-canaliculata_contig97.23770.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig97:47414..47926- (Pelvetia canaliculata dioecious)
ATGGGCACGCGTGGTGAACCCGAACGACGTCCTAGGGCTTTGACACTTGA
GCTGATCCGCGAGCCCGAGGACGTAGCCCCATCTACGCCTTCTCCATCCA
CTTCGTCATCGATGGATGTCGGCGGCGGCGGCGGCGGCGGCGCTGGTGGA
GGAGCAATCGCCGACGGAAGTGGAGGTGCCGGTGATGATGGGCACGCGTG
GTGAACCCGAACGACGTCCTAGGGCTTTGACACTTGAGCTGATCCGCGAG
CCCGAGGACGTAGCCCCATCTACGCCTTCTCCATCCACTTCGTCATCGAT
GGATGTCGGCGGCGGCGGCGGCGGCGGCGCTGGTGGAGGAGCAATCGCCG
ACGGAAGTGGAGGTGCCGGTGATGGCTCCTATCACCCCCGTCATCATCTG
ATCGCTCCTATCACCCCCGTCATCATCTGATC
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