mRNA_P-canaliculata_contig96678.23703.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig96678.23703.1
Unique NamemRNA_P-canaliculata_contig96678.23703.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96678.23703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96678contigP-canaliculata_contig96678:401..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue9.1e-09
Seed eggNOG ortholog2880.D8LR82
EggNOG OGs2E1F0@1,2S8S8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817328.497364-CDS-P-canaliculata_contig96678:400..5651622817328.497364-CDS-P-canaliculata_contig96678:400..565Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96678 401..565 +
1693495227.136757-CDS-P-canaliculata_contig96678:400..5651693495227.136757-CDS-P-canaliculata_contig96678:400..565Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96678 401..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96678.23703.1prot_P-canaliculata_contig96678.23703.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig96678 401..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig96678.23703.1

>prot_P-canaliculata_contig96678.23703.1 ID=prot_P-canaliculata_contig96678.23703.1|Name=mRNA_P-canaliculata_contig96678.23703.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=55bp
MTLDVISVQSVRWLALVAAQGLQLLKPKGRSRMREKDDARRSFLLPQAVL
VKVK*
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mRNA from alignment at P-canaliculata_contig96678:401..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig96678.23703.1 ID=mRNA_P-canaliculata_contig96678.23703.1|Name=mRNA_P-canaliculata_contig96678.23703.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at P-canaliculata_contig96678:401..565+ (Pelvetia canaliculata dioecious)
ATGACCCTCGATGTGATCTCCGTTCAGAGCGTTCGCTGGCTAGCACTCGT
GGCGGCACAGGGGCTGCAACTTTTGAAACCTAAGGGTCGGTCGAGAATGA
GGGAAAAGGACGACGCTCGAAGGAGCTTCTTGCTTCCTCAGGCGGTTCTG
GTGAAGGTAAAATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig96678:401..565+

>mRNA_P-canaliculata_contig96678.23703.1 ID=mRNA_P-canaliculata_contig96678.23703.1|Name=mRNA_P-canaliculata_contig96678.23703.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at P-canaliculata_contig96678:401..565+ (Pelvetia canaliculata dioecious)
ATGACCCTCGATGTGATCTCCGTTCAGAGCGTTCGCTGGCTAGCACTCGT
GGCGGCACAGGGGCTGCAACTTTTGAAACCTAAGGGTCGGTCGAGAATGA
GGGAAAAGGACGACGCTCGAAGGAGCTTCTTGCTTCCTCAGGCGGTTCTG
GTGAAGGTAAAATAAATGACCCTCGATGTGATCTCCGTTCAGAGCGTTCG
CTGGCTAGCACTCGTGGCGGCACAGGGGCTGCAACTTTTGAAACCTAAGG
GTCGGTCGAGAATGAGGGAAAAGGACGACGCTCGAAGGAGCTTCTTGCTT
CCTCAGGCGGTTCTGGTGAAGGTAAAATAA
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