mRNA_P-canaliculata_contig101442.237.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101442.237.1
Unique NamemRNA_P-canaliculata_contig101442.237.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Match: A0A517ZN86_9PLAN (Uncharacterized protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZN86_9PLAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.110e-10
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:  313 EDDSLI-QKLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGIGVFGLLLLLIAIPFPTRVWSWVE 519
            E DS++ Q+L G++Q +SII  A++EGA+F N   + TE HPVNL IG   +LLLL +IP  +R+ +WVE
Sbjct:   99 ESDSVVFQQLYGVYQYSSIIAAAILEGAIFLNLFAYFTEGHPVNLVIGGAFILLLLTSIPTASRIQNWVE 168
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BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Match: A0A2E7NJ41_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NJ41_9PLAN)

HSP 1 Score: 50.8 bits (120), Expect = 7.810e-5
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  334 KLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGIGVFGLLLLLIAIPFPTR--VWSWVE 519
            +LLG++Q   I+ LAL+EGA FFN ++F  E+H  +L +G  G+LLLL+   +PTR  + SW+ 
Sbjct:   83 ELLGLYQVRLIVGLALLEGAAFFNILVFSMEHHWASLMVG--GILLLLMLPRWPTRSKIESWIR 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517ZN86_9PLAN1.110e-1050.00Uncharacterized protein n=1 Tax=Symmachiella dynat... [more]
A0A2E7NJ41_9PLAN7.810e-545.31Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101442contigP-canaliculata_contig101442:138..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size519
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.102978-CDS-P-canaliculata_contig101442:137..6561622815588.102978-CDS-P-canaliculata_contig101442:137..656Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101442 138..656 +
1693494152.8158486-CDS-P-canaliculata_contig101442:137..6561693494152.8158486-CDS-P-canaliculata_contig101442:137..656Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101442 138..656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101442.237.1prot_P-canaliculata_contig101442.237.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101442 138..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101442.237.1

>prot_P-canaliculata_contig101442.237.1 ID=prot_P-canaliculata_contig101442.237.1|Name=mRNA_P-canaliculata_contig101442.237.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
MISDSVRSAFEPQTRVMLIIGAAMFLGACFFGVFVCAMADWAELKNVQAM
DIFQWVGIALGIGAFSASFIVPFFVRSAAVKELDSPLASPSQSGISSQRI
GSMDEDDSLIQKLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGI
GVFGLLLLLIAIPFPTRVWSWVE
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mRNA from alignment at P-canaliculata_contig101442:138..656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101442.237.1 ID=mRNA_P-canaliculata_contig101442.237.1|Name=mRNA_P-canaliculata_contig101442.237.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at P-canaliculata_contig101442:138..656+ (Pelvetia canaliculata dioecious)
ATGATTAGCGATTCAGTGCGCTCCGCGTTCGAGCCTCAAACCCGAGTCAT
GCTGATCATTGGCGCAGCGATGTTCTTGGGGGCCTGCTTTTTCGGAGTAT
TCGTTTGTGCGATGGCGGACTGGGCGGAGTTGAAAAACGTTCAGGCGATG
GACATTTTTCAATGGGTTGGAATTGCTTTGGGCATTGGTGCTTTTTCAGC
GTCTTTTATCGTGCCTTTTTTCGTTCGCAGTGCGGCCGTCAAAGAGTTGG
ACTCTCCATTGGCCAGTCCCTCGCAGTCCGGAATTTCCAGCCAGCGAATT
GGCTCGATGGACGAGGATGATTCTTTGATTCAAAAATTACTCGGTATTTT
TCAGACAACGTCGATTATCCGGCTCGCCTTGATCGAAGGCGCGGTCTTTT
TTAATTTCATGATGTTCATGACAGAAAACCATCCCGTCAATCTTGGCATC
GGAGTTTTCGGACTGTTGCTTTTGCTAATCGCAATACCGTTTCCAACGAG
AGTTTGGAGTTGGGTGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101442:138..656+

>mRNA_P-canaliculata_contig101442.237.1 ID=mRNA_P-canaliculata_contig101442.237.1|Name=mRNA_P-canaliculata_contig101442.237.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at P-canaliculata_contig101442:138..656+ (Pelvetia canaliculata dioecious)
ATGATTAGCGATTCAGTGCGCTCCGCGTTCGAGCCTCAAACCCGAGTCAT
GCTGATCATTGGCGCAGCGATGTTCTTGGGGGCCTGCTTTTTCGGAGTAT
TCGTTTGTGCGATGGCGGACTGGGCGGAGTTGAAAAACGTTCAGGCGATG
GACATTTTTCAATGGGTTGGAATTGCTTTGGGCATTGGTGCTTTTTCAGC
GTCTTTTATCGTGCCTTTTTTCGTTCGCAGTGCGGCCGTCAAAGAGTTGG
ACTCTCCATTGGCCAGTCCCTCGCAGTCCGGAATTTCCAGCCAGCGAATT
GGCTCGATGGACGAGGATGATTCTTTGATTCAAAAATTACTCGGTATTTT
TCAGACAACGTCGATTATCCGGCTCGCCTTGATCGAAGGCGCGGTCTTTT
TTAATTTCATGATGTTCATGACAGAAAACCATCCCGTCAATCTTGGCATC
GGAGTTTTCGGACTGTTGCTTTTGCTAATCGCAATACCGTTTCCAACGAG
AGTTTGGAGTTGGGTGGAGATGATTAGCGATTCAGTGCGCTCCGCGTTCG
AGCCTCAAACCCGAGTCATGCTGATCATTGGCGCAGCGATGTTCTTGGGG
GCCTGCTTTTTCGGAGTATTCGTTTGTGCGATGGCGGACTGGGCGGAGTT
GAAAAACGTTCAGGCGATGGACATTTTTCAATGGGTTGGAATTGCTTTGG
GCATTGGTGCTTTTTCAGCGTCTTTTATCGTGCCTTTTTTCGTTCGCAGT
GCGGCCGTCAAAGAGTTGGACTCTCCATTGGCCAGTCCCTCGCAGTCCGG
AATTTCCAGCCAGCGAATTGGCTCGATGGACGAGGATGATTCTTTGATTC
AAAAATTACTCGGTATTTTTCAGACAACGTCGATTATCCGGCTCGCCTTG
ATCGAAGGCGCGGTCTTTTTTAATTTCATGATGTTCATGACAGAAAACCA
TCCCGTCAATCTTGGCATCGGAGTTTTCGGACTGTTGCTTTTGCTAATCG
CAATACCGTTTCCAACGAGAGTTTGGAGTTGGGTGGAG
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