prot_P-canaliculata_contig9506.23523.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9506.23523.1
Unique Name	prot_P-canaliculata_contig9506.23523.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	234

Homology

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BLAST of mRNA_P-canaliculata_contig9506.23523.1 vs. uniprot
Match: D8LNJ2_ECTSI (Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 5.720e-60
Identity = 128/242 (52.89%), Postives = 165/242 (68.18%), Query Frame = 0

Query:    1 MRLSAGVTVGVGWISVVDVASFAFAPSQASPS-----SANVARVTNHGQALVRQRVRP-RGLAAMSMSAVEDELWRGEPWDEADETSSQVITKQKKR--SELDDIMSEVADRGN-EPVIVPRSAGIGPLPPGRIKPDPIPGMDADDVPGKIQVDIDTLVKQQKDLEKVARVLRRERLELERDEGRFFGWTITAEKWNGRSAMVGVAAGIFIEAVTGQSFPQQIEGIAQTLGLLPLDYETYFQ 233
            MRLSA V +GVG +SVV V+SFAF P  A+PS     +A+ ++ T+   +    RVRP R L A+S +  E     GE   + D+TSS V TK K++   ELDD++SE+A R + EP+++PR AGI P+ PG IKPDPIPGMD DD+PGKI +  + L +QQK LEK+A+ LRRERL+ E ++   FG+   AE WNGRSAM G+  G+  E  TGQS PQQIE  AQ LGLLPLDY+TYFQ
Sbjct:    1 MRLSASVALGVGCVSVVQVSSFAFVPLGATPSGCTSCTAHSSQATSGSGS--SSRVRPGRLLVALSAADGEGGSDSGEETAD-DDTSSAVATKPKRKVNPELDDLVSEMAGRSDDEPIVIPRGAGIAPMAPGPIKPDPIPGMDDDDIPGKIVLPPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYFQ 239

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BLAST of mRNA_P-canaliculata_contig9506.23523.1 vs. uniprot
Match: A0A0G4FAL0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FAL0_VITBC)

HSP 1 Score: 59.7 bits (143), Expect = 3.980e-7
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0

Query:  156 LEKVARVLRRERLELERDEGRFFGWTITAEKWNGRSAMVGVAAGIFIEAVTGQSFPQQIEGIAQTLGLLP 225
            L+ ++R    ERLE E +E R  GW+  AE  NGR+AM  VA G+  E  TGQS P+QI+ + QTLG+ P
Sbjct:  170 LQSLSRDWENERLEREIEEARLTGWSKGAELINGRTAMFFVATGLLTEFWTGQSIPEQIQTLFQTLGVAP 239

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9506.23523.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9506.23523.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LNJ2_ECTSI	5.720e-60	52.89	Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_EC...	[more]
A0A0G4FAL0_VITBC	3.980e-7	48.57	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 146..173
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..233
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 176..214

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9506	contig	P-canaliculata_contig9506:1218..7058 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9506.23523.1	mRNA_P-canaliculata_contig9506.23523.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9506 733..8035 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9506.23523.1 ID=prot_P-canaliculata_contig9506.23523.1|Name=mRNA_P-canaliculata_contig9506.23523.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=234bp
MRLSAGVTVGVGWISVVDVASFAFAPSQASPSSANVARVTNHGQALVRQR
VRPRGLAAMSMSAVEDELWRGEPWDEADETSSQVITKQKKRSELDDIMSE
VADRGNEPVIVPRSAGIGPLPPGRIKPDPIPGMDADDVPGKIQVDIDTLV
KQQKDLEKVARVLRRERLELERDEGRFFGWTITAEKWNGRSAMVGVAAGI
FIEAVTGQSFPQQIEGIAQTLGLLPLDYETYFQ*