prot_P-canaliculata_contig101366.227.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig101366.227.1
Unique Nameprot_P-canaliculata_contig101366.227.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length77
Homology
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BLAST of mRNA_P-canaliculata_contig101366.227.1 vs. uniprot
Match: A0A4V1SB54_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4V1SB54_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 2.930e-5
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0 
Query:   13 ERKVRENPTKSVLYAAAAGYGLLLLPAGSLLRLPLRLGAVLAKPALLGLGAAKLYEIVQKKT 74
            E +VR++P +SVL A   G  L  +P  S+L   ++L + LA PALL  GAAKL EI+QKK+
Sbjct:   34 EDRVRKHPVESVLGAVVVGCLLHRMPVRSILVAKVKLVSALAPPALLAYGAAKLCEILQKKS 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101366.227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4V1SB54_9BACT2.930e-548.39Uncharacterized protein n=1 Tax=Verrucomicrobiacea... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 68..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..67
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..43
NoneNo IPR availableTMHMMTMhelixcoord: 24..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101366contigP-canaliculata_contig101366:686..916 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101366.227.1mRNA_P-canaliculata_contig101366.227.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig101366 686..916 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig101366.227.1 ID=prot_P-canaliculata_contig101366.227.1|Name=mRNA_P-canaliculata_contig101366.227.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=77bp
METTSTTKLEQLERKVRENPTKSVLYAAAAGYGLLLLPAGSLLRLPLRLG
AVLAKPALLGLGAAKLYEIVQKKTVS*
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