mRNA_P-canaliculata_contig101366.227.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101366.227.1
Unique NamemRNA_P-canaliculata_contig101366.227.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101366.227.1 vs. uniprot
Match: A0A4V1SB54_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4V1SB54_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 2.930e-5
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   37 ERKVRENPTKSVLYAAAAGYGLLLLPAGSLLRLPLRLGAVLAKPALLGLGAAKLYEIVQKKT 222
            E +VR++P +SVL A   G  L  +P  S+L   ++L + LA PALL  GAAKL EI+QKK+
Sbjct:   34 EDRVRKHPVESVLGAVVVGCLLHRMPVRSILVAKVKLVSALAPPALLAYGAAKLCEILQKKS 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101366.227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4V1SB54_9BACT2.930e-548.39Uncharacterized protein n=1 Tax=Verrucomicrobiacea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101366contigP-canaliculata_contig101366:686..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.2744112-CDS-P-canaliculata_contig101366:685..9161622815587.2744112-CDS-P-canaliculata_contig101366:685..916Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101366 686..916 +
1693494152.3943543-CDS-P-canaliculata_contig101366:685..9161693494152.3943543-CDS-P-canaliculata_contig101366:685..916Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101366 686..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101366.227.1prot_P-canaliculata_contig101366.227.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101366 686..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101366.227.1

>prot_P-canaliculata_contig101366.227.1 ID=prot_P-canaliculata_contig101366.227.1|Name=mRNA_P-canaliculata_contig101366.227.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=77bp
METTSTTKLEQLERKVRENPTKSVLYAAAAGYGLLLLPAGSLLRLPLRLG
AVLAKPALLGLGAAKLYEIVQKKTVS*
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mRNA from alignment at P-canaliculata_contig101366:686..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101366.227.1 ID=mRNA_P-canaliculata_contig101366.227.1|Name=mRNA_P-canaliculata_contig101366.227.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at P-canaliculata_contig101366:686..916+ (Pelvetia canaliculata dioecious)
ATGGAAACCACATCAACAACCAAACTCGAACAACTCGAACGGAAAGTCCG
TGAAAACCCGACCAAATCCGTTCTCTACGCCGCGGCCGCCGGTTACGGTC
TTTTGCTCCTACCCGCAGGTTCCCTCCTACGCCTTCCCCTGCGCCTGGGC
GCCGTTCTAGCGAAGCCGGCTCTGCTCGGTCTCGGAGCTGCGAAACTTTA
CGAAATCGTCCAGAAGAAAACGGTAAGCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101366:686..916+

>mRNA_P-canaliculata_contig101366.227.1 ID=mRNA_P-canaliculata_contig101366.227.1|Name=mRNA_P-canaliculata_contig101366.227.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at P-canaliculata_contig101366:686..916+ (Pelvetia canaliculata dioecious)
ATGGAAACCACATCAACAACCAAACTCGAACAACTCGAACGGAAAGTCCG
TGAAAACCCGACCAAATCCGTTCTCTACGCCGCGGCCGCCGGTTACGGTC
TTTTGCTCCTACCCGCAGGTTCCCTCCTACGCCTTCCCCTGCGCCTGGGC
GCCGTTCTAGCGAAGCCGGCTCTGCTCGGTCTCGGAGCTGCGAAACTTTA
CGAAATCGTCCAGAAGAAAACGGTAAGCTGAATGGAAACCACATCAACAA
CCAAACTCGAACAACTCGAACGGAAAGTCCGTGAAAACCCGACCAAATCC
GTTCTCTACGCCGCGGCCGCCGGTTACGGTCTTTTGCTCCTACCCGCAGG
TTCCCTCCTACGCCTTCCCCTGCGCCTGGGCGCCGTTCTAGCGAAGCCGG
CTCTGCTCGGTCTCGGAGCTGCGAAACTTTACGAAATCGTCCAGAAGAAA
ACGGTAAGCTGA
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