mRNA_P-canaliculata_contig10136.225.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10136.225.1
Unique NamemRNA_P-canaliculata_contig10136.225.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10136.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10136contigP-canaliculata_contig10136:9084..11598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2215
Cds size1683
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10136.225.1prot_P-canaliculata_contig10136.225.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10136 9766..11448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1401222-UTR-P-canaliculata_contig10136:9083..94611622815587.1401222-UTR-P-canaliculata_contig10136:9083..9461Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10136 9084..9461 -
1693494152.3381422-UTR-P-canaliculata_contig10136:9083..94611693494152.3381422-UTR-P-canaliculata_contig10136:9083..9461Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10136 9084..9461 -
1622815587.1568525-UTR-P-canaliculata_contig10136:9761..97651622815587.1568525-UTR-P-canaliculata_contig10136:9761..9765Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10136 9762..9765 -
1693494152.34599-UTR-P-canaliculata_contig10136:9761..97651693494152.34599-UTR-P-canaliculata_contig10136:9761..9765Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10136 9762..9765 -
1622815587.1890075-UTR-P-canaliculata_contig10136:11448..115981622815587.1890075-UTR-P-canaliculata_contig10136:11448..11598Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10136 11449..11598 -
1693494152.3730876-UTR-P-canaliculata_contig10136:11448..115981693494152.3730876-UTR-P-canaliculata_contig10136:11448..11598Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10136 11449..11598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1763544-CDS-P-canaliculata_contig10136:9765..114481622815587.1763544-CDS-P-canaliculata_contig10136:9765..11448Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10136 9766..11448 -
1693494152.3596714-CDS-P-canaliculata_contig10136:9765..114481693494152.3596714-CDS-P-canaliculata_contig10136:9765..11448Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10136 9766..11448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10136.225.1

>prot_P-canaliculata_contig10136.225.1 ID=prot_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=561bp
MVDVCSKKCSTEGCGNLASFGVPGTRTAEYCAEHAPEGMVDVKSRKCRTE
GCGKIPYFGVTGTKFGEYCAQHALEGMVDVKSRKCRIASCGKIPFFGVAG
TKTGEYCAQHALVGMVDVKSRKCKTASCGKRPFFGVAGTKTGEYCAQHAL
EGMVNIKSRKCRTEGCGKLPSFGVAGTKTVEYCAQHALEGMVNVHNRKCG
TEDCGKLPSFGAAGTKTREYCAQHAPEGMVNVKSRQCRIEGCGMLPCFGV
AGTKTGEYCAQHALEGMVNVKSKMCRTASCGKQPFFGVAGAKSGEYCAHH
ALEGMVDVKSRKCRTEGCGKFPSFGVAGTKTREYCAQHALEGMVNIHNRK
CGTEDCGKLPSFGAAGTKTREYCAQHAPEGMVNVKSKQWRIEGYGEIPSF
EVTGTKTAEYCAKYSLDGMVQVKSRKCRTEGCGKIPSYGVAGTKTAEYCA
QHTRLQWSVEGLREREVCPHHSGKEAIAIVIPSVAKRTSVCPPPTATSRP
SGPSPDSRKRVRYPETTSTASKRAIAREPTAGGVTMPDIDGQKSPAKRNP
SVKMEVQLSL*
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mRNA from alignment at P-canaliculata_contig10136:9084..11598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10136.225.1 ID=mRNA_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2515bp|location=Sequence derived from alignment at P-canaliculata_contig10136:9084..11598- (Pelvetia canaliculata dioecious)
GCTGCGGGCAAAACGATGCACCGCACGTACCAGAAGTGATGATCAACATC
TTCAGCAGCAAGTTTAAAATCAAAATTTTCACCAAGTGCGCATCGTTTGG
GGTGGCAGGTACCACATGCGAAGTACTATGAGCAGCACGCTCTTGGCGGG
ATGGTCGACGTCTGTAGCAAAAAGTGCAGTACTGAAGGCTGCGGCAATCT
AGCGTCTTTCGGAGTTCCGGGTACAAGAACGGCGGAGTACTGTGCAGAGC
ACGCACCGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAA
GGCTGCGGCAAGATACCGTATTTTGGAGTTACAGGTACGAAATTTGGGGA
GTACTGTGCACAGCATGCACTGGAGGGGATGGTCGACGTCAAGAGCAGAA
AGTGCAGAATCGCAAGCTGCGGCAAGATACCGTTTTTCGGAGTTGCGGGT
ACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGTGGGGATGGTCGA
CGTCAAGAGCAGAAAGTGCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTT
TTGGAGTTGCAGGTACGAAAACTGGGGAGTACTGTGCACAACACGCACTG
GAGGGGATGGTCAACATCAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGG
CAAGCTTCCATCTTTCGGAGTTGCAGGTACAAAAACGGTGGAGTACTGTG
CACAGCATGCACTAGAGGGGATGGTCAATGTTCACAACAGAAAGTGCGGA
ACCGAAGACTGCGGCAAGCTACCGTCTTTCGGAGCCGCAGGTACCAAAAC
TAGAGAGTACTGTGCACAACACGCACCGGAGGGGATGGTCAACGTCAAGA
GCAGACAGTGCAGAATCGAAGGCTGTGGCATGCTTCCATGTTTCGGAGTT
GCAGGTACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGAAGGGAT
GGTAAACGTCAAGAGCAAAATGTGCAGAACCGCAAGCTGCGGCAAGCAAC
CGTTTTTCGGAGTTGCAGGTGCGAAATCTGGGGAGTACTGTGCCCATCAC
GCACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGG
GTGCGGCAAGTTTCCATCGTTCGGAGTTGCAGGTACAAAAACTAGGGAGT
ACTGTGCACAGCATGCACTGGAGGGGATGGTCAACATTCACAACAGAAAG
TGCGGAACCGAAGACTGCGGCAAGCTACCGTCGTTCGGAGCCGCAGGTAC
CAAAACTAGGGAGTACTGTGCACAGCACGCACCGGAGGGGATGGTCAACG
TCAAGAGCAAACAGTGGAGAATCGAAGGGTATGGCGAGATACCGTCTTTC
GAGGTTACAGGTACGAAAACAGCGGAATACTGTGCAAAGTACTCCTTGGA
CGGAATGGTGCAGGTCAAAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTA
AAATCCCATCGTACGGAGTTGCAGGTACGAAAACGGCGGAGTACTGTGCG
CAACACACCAGACTACAATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGT
TTGCCCACACCACTCCGGGAAAGAAGCCATTGCTATCGTAATTCCGAGTG
TTGCCAAACGTACGAGCGTTTGTCCTCCTCCCACCGCGACGAGTAGGCCG
TCGGGTCCTAGTCCGGATTCTCGTAAGCGAGTACGATACCCAGAAACTAC
GTCTACGGCGTCAAAGCGAGCTATTGCACGAGAGCCGACTGCAGGAGGTG
TGACTATGCCGGATATTGACGGCCAAAAATCTCCCGCCAAACGAAATCCT
TCTGTGAAGATGGAGGTGCAGCTCTCCTTGTAGCCAGGTACACTACACGT
GACTACAACCCTTATATGCTTCATATAAGTTTTTTTACTCGCGTAATACG
ATTCCGGTGACCGGAGTTAATTAGTTCGCTTTTTATTTTGTGCATATTGA
ATGTGTAACCTGTCTCGTTCATGAATCTTGCGCTGTGTTTCGTCACAATG
CTGTGTGTTCAACTCAAGGGCCCCTGTTCCTCTTATACCACCAAGATCTT
TCACCCGCAGCCATTCATACATGAAACACGTTACTCGCGCTTACCCCCAC
TATCTTGTTCTACTGCTCTCCCGACTTTGGAACTCAGGTGCTGCTATCAA
GATCGTGGTCATGATATTTACTGTTAGGTCTGGTGAGGGTCTAACCGTGT
GACCTGGGTAATAAGTCGTGCATTTTTCTTGGTGCTCTATTATCTAGCGG
GGATACTATCAGCTGATGATGTGTGCATATTCGAGTATTTAATCATTGCA
GGTGCCGGTATCATCTCATGGACCCTCCTGTGCGTGGTACCTTACCGCAG
CTTCCTGACAACAACACCGGTTCAGACAGCAACACATACACAAAACATCC
TTCCAGCCTACCCTAGTGGAAGGAAATATCGAAGCCCAAACAACAAAACT
AAAGTCTAAGCCAAAACCCATGCACTCATAAAAAAAAAGCTGAAAACAAT
GCCTAAAAATAGCCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10136:9084..11598-

>mRNA_P-canaliculata_contig10136.225.1 ID=mRNA_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3366bp|location=Sequence derived from alignment at P-canaliculata_contig10136:9084..11598- (Pelvetia canaliculata dioecious)
ATGGTCGACGTCTGTAGCAAAAAGTGCAGTACTGAAGGCTGCGGCAATCT
AGCGTCTTTCGGAGTTCCGGGTACAAGAACGGCGGAGTACTGTGCAGAGC
ACGCACCGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAA
GGCTGCGGCAAGATACCGTATTTTGGAGTTACAGGTACGAAATTTGGGGA
GTACTGTGCACAGCATGCACTGGAGGGGATGGTCGACGTCAAGAGCAGAA
AGTGCAGAATCGCAAGCTGCGGCAAGATACCGTTTTTCGGAGTTGCGGGT
ACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGTGGGGATGGTCGA
CGTCAAGAGCAGAAAGTGCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTT
TTGGAGTTGCAGGTACGAAAACTGGGGAGTACTGTGCACAACACGCACTG
GAGGGGATGGTCAACATCAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGG
CAAGCTTCCATCTTTCGGAGTTGCAGGTACAAAAACGGTGGAGTACTGTG
CACAGCATGCACTAGAGGGGATGGTCAATGTTCACAACAGAAAGTGCGGA
ACCGAAGACTGCGGCAAGCTACCGTCTTTCGGAGCCGCAGGTACCAAAAC
TAGAGAGTACTGTGCACAACACGCACCGGAGGGGATGGTCAACGTCAAGA
GCAGACAGTGCAGAATCGAAGGCTGTGGCATGCTTCCATGTTTCGGAGTT
GCAGGTACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGAAGGGAT
GGTAAACGTCAAGAGCAAAATGTGCAGAACCGCAAGCTGCGGCAAGCAAC
CGTTTTTCGGAGTTGCAGGTGCGAAATCTGGGGAGTACTGTGCCCATCAC
GCACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGG
GTGCGGCAAGTTTCCATCGTTCGGAGTTGCAGGTACAAAAACTAGGGAGT
ACTGTGCACAGCATGCACTGGAGGGGATGGTCAACATTCACAACAGAAAG
TGCGGAACCGAAGACTGCGGCAAGCTACCGTCGTTCGGAGCCGCAGGTAC
CAAAACTAGGGAGTACTGTGCACAGCACGCACCGGAGGGGATGGTCAACG
TCAAGAGCAAACAGTGGAGAATCGAAGGGTATGGCGAGATACCGTCTTTC
GAGGTTACAGGTACGAAAACAGCGGAATACTGTGCAAAGTACTCCTTGGA
CGGAATGGTGCAGGTCAAAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTA
AAATCCCATCGTACGGAGTTGCAGGTACGAAAACGGCGGAGTACTGTGCG
CAACACACCAGACTACAATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGT
TTGCCCACACCACTCCGGGAAAGAAGCCATTGCTATCGTAATTCCGAGTG
TTGCCAAACGTACGAGCGTTTGTCCTCCTCCCACCGCGACGAGTAGGCCG
TCGGGTCCTAGTCCGGATTCTCGTAAGCGAGTACGATACCCAGAAACTAC
GTCTACGGCGTCAAAGCGAGCTATTGCACGAGAGCCGACTGCAGGAGGTG
TGACTATGCCGGATATTGACGGCCAAAAATCTCCCGCCAAACGAAATCCT
TCTGTGAAGATGGAGGTGCAGCTCTCCTTGTAGATGGTCGACGTCTGTAG
CAAAAAGTGCAGTACTGAAGGCTGCGGCAATCTAGCGTCTTTCGGAGTTC
CGGGTACAAGAACGGCGGAGTACTGTGCAGAGCACGCACCGGAGGGGATG
GTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGCTGCGGCAAGATACC
GTATTTTGGAGTTACAGGTACGAAATTTGGGGAGTACTGTGCACAGCATG
CACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAATCGCAAGC
TGCGGCAAGATACCGTTTTTCGGAGTTGCGGGTACGAAAACTGGGGAGTA
CTGTGCACAGCACGCACTGGTGGGGATGGTCGACGTCAAGAGCAGAAAGT
GCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTTTTGGAGTTGCAGGTACG
AAAACTGGGGAGTACTGTGCACAACACGCACTGGAGGGGATGGTCAACAT
CAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGGCAAGCTTCCATCTTTCG
GAGTTGCAGGTACAAAAACGGTGGAGTACTGTGCACAGCATGCACTAGAG
GGGATGGTCAATGTTCACAACAGAAAGTGCGGAACCGAAGACTGCGGCAA
GCTACCGTCTTTCGGAGCCGCAGGTACCAAAACTAGAGAGTACTGTGCAC
AACACGCACCGGAGGGGATGGTCAACGTCAAGAGCAGACAGTGCAGAATC
GAAGGCTGTGGCATGCTTCCATGTTTCGGAGTTGCAGGTACGAAAACTGG
GGAGTACTGTGCACAGCACGCACTGGAAGGGATGGTAAACGTCAAGAGCA
AAATGTGCAGAACCGCAAGCTGCGGCAAGCAACCGTTTTTCGGAGTTGCA
GGTGCGAAATCTGGGGAGTACTGTGCCCATCACGCACTGGAGGGGATGGT
CGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGGTGCGGCAAGTTTCCAT
CGTTCGGAGTTGCAGGTACAAAAACTAGGGAGTACTGTGCACAGCATGCA
CTGGAGGGGATGGTCAACATTCACAACAGAAAGTGCGGAACCGAAGACTG
CGGCAAGCTACCGTCGTTCGGAGCCGCAGGTACCAAAACTAGGGAGTACT
GTGCACAGCACGCACCGGAGGGGATGGTCAACGTCAAGAGCAAACAGTGG
AGAATCGAAGGGTATGGCGAGATACCGTCTTTCGAGGTTACAGGTACGAA
AACAGCGGAATACTGTGCAAAGTACTCCTTGGACGGAATGGTGCAGGTCA
AAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTAAAATCCCATCGTACGGA
GTTGCAGGTACGAAAACGGCGGAGTACTGTGCGCAACACACCAGACTACA
ATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGTTTGCCCACACCACTCCG
GGAAAGAAGCCATTGCTATCGTAATTCCGAGTGTTGCCAAACGTACGAGC
GTTTGTCCTCCTCCCACCGCGACGAGTAGGCCGTCGGGTCCTAGTCCGGA
TTCTCGTAAGCGAGTACGATACCCAGAAACTACGTCTACGGCGTCAAAGC
GAGCTATTGCACGAGAGCCGACTGCAGGAGGTGTGACTATGCCGGATATT
GACGGCCAAAAATCTCCCGCCAAACGAAATCCTTCTGTGAAGATGGAGGT
GCAGCTCTCCTTGTAG
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