prot_P-canaliculata_contig101322.222.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig101322.222.1
Unique Nameprot_P-canaliculata_contig101322.222.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length257
Homology
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BLAST of mRNA_P-canaliculata_contig101322.222.1 vs. uniprot
Match: A0A5C5UXF0_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5UXF0_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.120e-6
Identity = 44/169 (26.04%), Postives = 82/169 (48.52%), Query Frame = 0 
Query:    1 RLLRFRLRTILLLILLASAWMAWHLDRSKKQVRAVEGVTSTGGSVIYDFKFDGDPVFTNYRENAESPYPKFILDAVGYDFLHSVVSIRLNPNQDSNDNNKQSTDWAEHLEGVKNLRHVYMRGNQVDDEVLKRLGKLKHLRSVNVWFGT-SVTDKGIQDLAKSRKIKSVR 168
            RLLR RLR++LLL+  AS  + + +  ++ + +A+  +   GG V+++            R   + P P+++ D +G D+      I L      ++N     D   H    +     + R   + D  ++RLG +++L+ V  + G  S+TDKG+  L + RK+  V+
Sbjct:    9 RLLRIRLRSLLLLMAAASLLLFYPMKAARDRAQALRTIQELGGDVLFE-----------ERSPTDRPVPRWLTDWLGQDYFRRARWIDLLGENFDDEN----IDLIRHFPEARVFCSYHSR---ITDAGMRRLGSMRNLQEV--YLGNLSITDKGLDSLTRLRKLTKVQ 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101322.222.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C5UXF0_9BACT1.120e-626.04Uncharacterized protein n=1 Tax=Posidoniimonas cor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 72..256
e-value: 1.0E-20
score: 75.5
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 189..203
e-value: 1.4
score: 9.2
NoneNo IPR availablePANTHERPTHR13318:SF72LEUCINE-RICH REPEAT FAMILY PROTEINcoord: 108..256
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 108..256
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..257
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.796
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 98..246
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101322contigP-canaliculata_contig101322:207..977 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101322.222.1mRNA_P-canaliculata_contig101322.222.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig101322 207..977 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig101322.222.1 ID=prot_P-canaliculata_contig101322.222.1|Name=mRNA_P-canaliculata_contig101322.222.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=257bp
RLLRFRLRTILLLILLASAWMAWHLDRSKKQVRAVEGVTSTGGSVIYDFK
FDGDPVFTNYRENAESPYPKFILDAVGYDFLHSVVSIRLNPNQDSNDNNK
QSTDWAEHLEGVKNLRHVYMRGNQVDDEVLKRLGKLKHLRSVNVWFGTSV
TDKGIQDLAKSRKIKSVRFQHGGLTDESLKHLSTLPEIECIDLQGNCLSD
KGLNYLHDKTNLSELWVGLGNNNITNRGLKKLFRLKNIKVLGIQNIDATQ
NEVNLLK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt