mRNA_P-canaliculata_contig10127.215.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10127.215.1
Unique NamemRNA_P-canaliculata_contig10127.215.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10127.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10127contigP-canaliculata_contig10127:773..2163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1149
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10127.215.1prot_P-canaliculata_contig10127.215.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10127 1542..1955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.4600005-UTR-P-canaliculata_contig10127:772..9331622815586.4600005-UTR-P-canaliculata_contig10127:772..933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 773..933 +
1693494151.993697-UTR-P-canaliculata_contig10127:772..9331693494151.993697-UTR-P-canaliculata_contig10127:772..933Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 773..933 +
1622815586.471439-UTR-P-canaliculata_contig10127:1175..15411622815586.471439-UTR-P-canaliculata_contig10127:1175..1541Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 1176..1541 +
1693494152.001817-UTR-P-canaliculata_contig10127:1175..15411693494152.001817-UTR-P-canaliculata_contig10127:1175..1541Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 1176..1541 +
1622815586.50144-UTR-P-canaliculata_contig10127:1955..21631622815586.50144-UTR-P-canaliculata_contig10127:1955..2163Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 1956..2163 +
1693494152.03157-UTR-P-canaliculata_contig10127:1955..21631693494152.03157-UTR-P-canaliculata_contig10127:1955..2163Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 1956..2163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.4838583-CDS-P-canaliculata_contig10127:1541..19551622815586.4838583-CDS-P-canaliculata_contig10127:1541..1955Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10127 1542..1955 +
1693494152.0175815-CDS-P-canaliculata_contig10127:1541..19551693494152.0175815-CDS-P-canaliculata_contig10127:1541..1955Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10127 1542..1955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10127.215.1

>prot_P-canaliculata_contig10127.215.1 ID=prot_P-canaliculata_contig10127.215.1|Name=mRNA_P-canaliculata_contig10127.215.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp
MDQSLFGKATFSDWTYSGAFADTRERGGFGNSELLGDSSEDASSAGVDEW
TGIELSPSAARLGEMQGVLIPAAKVDTDAERNKFREMWHSRLVPGGRSFL
DFPAFTLELNTDVQQMEEGKMPFEPIYRKTQSHLESY*
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mRNA from alignment at P-canaliculata_contig10127:773..2163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10127.215.1 ID=mRNA_P-canaliculata_contig10127.215.1|Name=mRNA_P-canaliculata_contig10127.215.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1391bp|location=Sequence derived from alignment at P-canaliculata_contig10127:773..2163+ (Pelvetia canaliculata dioecious)
TTTTCGGGCCGTCATCCGCCTTGCCCTGTTAAAAGCAGTCGGGTGTCAAG
CGTAAGGAATGATGCTCGCGGCGCGCTATCCTTGGAGACGGACCATGCGA
CCTCACCTGCTTCGTGTACAAATATGCCGCGTGTGCAAAGGGCAATGCGG
GCAAGCCGTAGGTATGACAGTTTTTTAAAGTTCGTATATTCGGTTGCCTG
ATTTTATACATGCACGAGTGCTGCGCGCAGTAGTCGATAGTTTTGCATCG
ACGCAGCATCCAGCCTCCCGTCGGCACTCAAGGTTGAGATAATTCAGAAA
ACTGGCGATACGCACCTTTGGATCTAACGTGTCTTACTCTGCTTCGATCT
GCGCGATGTCGCTGTTGCTCGTCCTCTCTCCCCCCTCTCGTCGCCGTTAC
AAGGACGCGCGTGTGTCGGAGACATTCAGAGGTTGTGATGCAGTAGTGCT
GGCGCAACTTCGCTATTATTACAATGTCCTTCCCGTTCCTGCCGAACAAG
CGGTCTTCGTGGGTCCATCGGTGGTTTCTGCGATCAGCCCATCATCGAAG
CTATCCAAGCGCGCTGGACCTGTGTTTGGACCCAGCTCAGAGTATGTCGA
GGTGTCAGTGTAAAACTACTGTTTGCCCTGCGCGTGACTTTTTTTTCCCC
CTCACTTGGTGAACGACACAACCCTCGACCATCCACCTGTTATGTTTTTT
CCCGCCCGGTGATTAGTCAAGAATGTTACCTCACTATTTTTGTTTCGAAC
TCCCACCCTTTTGTAGGAAATGGACCAGAGCCTGTTCGGCAAGGCTACGT
TCTCCGACTGGACATATAGTGGCGCATTCGCTGACACCAGGGAGAGGGGT
GGTTTCGGGAATAGTGAGCTGCTGGGAGACTCGAGCGAGGACGCTTCTAG
CGCCGGAGTGGACGAGTGGACTGGGATTGAGCTCTCCCCATCGGCGGCAC
GCCTCGGGGAGATGCAAGGAGTTCTAATCCCGGCCGCGAAAGTGGACACC
GACGCCGAGCGCAATAAGTTTCGTGAAATGTGGCATTCGCGTCTCGTGCC
GGGTGGGCGCAGTTTCCTGGACTTCCCTGCCTTCACCCTTGAGTTGAACA
CCGATGTGCAGCAGATGGAAGAGGGCAAGATGCCTTTCGAACCTATCTAC
AGAAAGACTCAGTCGCATCTCGAGTCGTACTGAAAAACGTGAGTGATCTG
AGTACTTTTATTTGTTGTGCCGCGTTCTGCCGGTCAACATTTGGTTGTCC
ATGTTTCTGTCGCGCGTCCGAACGAGGTACATATGTTGTCAGCGAACACG
TGATTCACCTGCACTCCCTTTCGGCGGCGCTGATAATTTTTTGCAAGGCA
CAACGAGAGCCGGAACGAGAGGGGGACGCTGAGCGGAGTGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10127:773..2163+

>mRNA_P-canaliculata_contig10127.215.1 ID=mRNA_P-canaliculata_contig10127.215.1|Name=mRNA_P-canaliculata_contig10127.215.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig10127:773..2163+ (Pelvetia canaliculata dioecious)
ATGGACCAGAGCCTGTTCGGCAAGGCTACGTTCTCCGACTGGACATATAG
TGGCGCATTCGCTGACACCAGGGAGAGGGGTGGTTTCGGGAATAGTGAGC
TGCTGGGAGACTCGAGCGAGGACGCTTCTAGCGCCGGAGTGGACGAGTGG
ACTGGGATTGAGCTCTCCCCATCGGCGGCACGCCTCGGGGAGATGCAAGG
AGTTCTAATCCCGGCCGCGAAAGTGGACACCGACGCCGAGCGCAATAAGT
TTCGTGAAATGTGGCATTCGCGTCTCGTGCCGGGTGGGCGCAGTTTCCTG
GACTTCCCTGCCTTCACCCTTGAGTTGAACACCGATGTGCAGCAGATGGA
AGAGGGCAAGATGCCTTTCGAACCTATCTACAGAAAGACTCAGTCGCATC
TCGAGTCGTACTGAATGGACCAGAGCCTGTTCGGCAAGGCTACGTTCTCC
GACTGGACATATAGTGGCGCATTCGCTGACACCAGGGAGAGGGGTGGTTT
CGGGAATAGTGAGCTGCTGGGAGACTCGAGCGAGGACGCTTCTAGCGCCG
GAGTGGACGAGTGGACTGGGATTGAGCTCTCCCCATCGGCGGCACGCCTC
GGGGAGATGCAAGGAGTTCTAATCCCGGCCGCGAAAGTGGACACCGACGC
CGAGCGCAATAAGTTTCGTGAAATGTGGCATTCGCGTCTCGTGCCGGGTG
GGCGCAGTTTCCTGGACTTCCCTGCCTTCACCCTTGAGTTGAACACCGAT
GTGCAGCAGATGGAAGAGGGCAAGATGCCTTTCGAACCTATCTACAGAAA
GACTCAGTCGCATCTCGAGTCGTACTGA
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