prot_P-canaliculata_contig101224.212.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig101224.212.1
Unique Nameprot_P-canaliculata_contig101224.212.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length107
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101224.212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002797Polysaccharide biosynthesis proteinPFAMPF01943Polysacc_syntcoord: 3..104
e-value: 2.9E-7
score: 30.2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 107..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..39
NoneNo IPR availableTMHMMTMhelixcoord: 41..63
NoneNo IPR availableTMHMMTMhelixcoord: 84..106
NoneNo IPR availableTMHMMTMhelixcoord: 9..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101224contigP-canaliculata_contig101224:445..765 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101224.212.1mRNA_P-canaliculata_contig101224.212.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig101224 445..765 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig101224.212.1 ID=prot_P-canaliculata_contig101224.212.1|Name=mRNA_P-canaliculata_contig101224.212.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=107bp
SKFLKNGSWISLGFGIKSISQFLVSIFLTRILLPNTLGDYFLVANLVPFV
NIIGSLGLPQTLVKIVPKLFLADNYHAISKYYTFFFKILFVSTLLISLIF
ILVFSFF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002797Polysacc_synth