mRNA_P-canaliculata_contig101159.204.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101159.204.1
Unique NamemRNA_P-canaliculata_contig101159.204.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: UPI00167C3CC2 (peptidoglycan-associated lipoprotein Pal n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167C3CC2)

HSP 1 Score: 230 bits (587), Expect = 3.370e-74
Identity = 123/186 (66.13%), Postives = 138/186 (74.19%), Query Frame = 1
Query:    4 LMAGAALLILSACATQPDPVAE-LPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRL 558
            L+A AALL+LSACAT+PDPV E +  P                          V  P      P PGS+EDFA+Q+GGEPRVFFGY+Q+DLSPEA DVLRRQANWL+IY DATAVIEG+ADERGTREYNLALGARRA+SV+ FLVSQGVSPNRL+TISYGKERPID R    GWARNRNGFT+LRL
Sbjct:    5 LIASAALLVLSACATKPDPVEEVIERPAEVETPGPVFEPAPEVLPPVIDQPTTVEAPQVNL--PTPGSIEDFAYQAGGEPRVFFGYDQFDLSPEARDVLRRQANWLSIYTDATAVIEGHADERGTREYNLALGARRADSVKSFLVSQGVSPNRLKTISYGKERPIDARSTESGWARNRNGFTSLRL 188          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: UPI0004091623 (peptidoglycan-associated lipoprotein Pal n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0004091623)

HSP 1 Score: 192 bits (487), Expect = 5.350e-59
Identity = 105/190 (55.26%), Postives = 123/190 (64.74%), Query Frame = 1
Query:   19 ALLILSACATQPD-------PVAELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIP--PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLG 561
            A+L LSACAT+P        PV E PP                            V  G  F P  P+PGS+ DFA+Q GGEPR++FGY++YDL+ EA + LRRQA WL  Y    A+IEGNADERGTREYNLALGARRA++V+ FLVSQGVSP+RL T+SYGKERPIDG  N  GWARNRNG TN+  G
Sbjct:   11 AVLALSACATKPKIEPVQERPVVEAPPQIFEDTKPTPAPVVQLPP----------VDQGPVFDPNAPVPGSIADFAYQVGGEPRIYFGYDRYDLTNEAREALRRQAQWLQAYGQVNAIIEGNADERGTREYNLALGARRADTVKAFLVSQGVSPSRLTTVSYGKERPIDGASNEAGWARNRNGHTNITTG 190          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A420WL91_9PROT (Peptidoglycan-associated protein n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WL91_9PROT)

HSP 1 Score: 191 bits (485), Expect = 9.180e-59
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:  190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570
            P+PGS+EDFA+QSGGEPRV+FGY+Q+ LS EA + L  QANWL  Y +A A+IEG+ADERGTREYNLALGARRAE+V+ FLV QGV+  RL T+SYGKERPIDGR N  GWARNRNGFTN+ +GG S
Sbjct:   62 PVPGSVEDFAYQSGGEPRVYFGYDQFTLSQEARNSLLAQANWLMTYTNANAIIEGHADERGTREYNLALGARRAEAVKAFLVGQGVASGRLTTVSYGKERPIDGRSNEAGWARNRNGFTNITVGGIS 188          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A8J3CKN8_9PROT (Peptidoglycan-associated lipoprotein n=2 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CKN8_9PROT)

HSP 1 Score: 184 bits (468), Expect = 1.070e-56
Identity = 86/127 (67.72%), Postives = 104/127 (81.89%), Query Frame = 1
Query:  190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570
            P PGSLEDFA+ +GG+ R++F Y+Q+ LS +A   LR+QA WLN Y   TAV+EG+ADERGTR+YN+ALGARRA SV+ FLVSQGV P+RL T+SYGKERPIDGR N +GWARNRNG+TNLR  G S
Sbjct:   25 PFPGSLEDFAYSTGGDARIYFSYDQFTLSADARQTLRQQAEWLNRYNSYTAVVEGHADERGTRQYNIALGARRANSVKAFLVSQGVEPSRLTTVSYGKERPIDGRSNEEGWARNRNGYTNLRPVGQS 151          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A848V2D8_9PROT (Peptidoglycan-associated protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V2D8_9PROT)

HSP 1 Score: 176 bits (447), Expect = 5.470e-53
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = 1
Query:  190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLG 561
            P+PGSL+DF F SGG+ RVFF  +++DLS  A + L+RQA WL  YQ  TAVIEGNADERGTREYNLAL ARRAESV+ FLVS GVSP+RL T+SYGKERPID R N +GWARNRN  TNL  G
Sbjct:   63 PLPGSLDDFHFVSGGQGRVFFALDKHDLSSGARESLKRQAQWLQTYQGVTAVIEGNADERGTREYNLALAARRAESVKSFLVSLGVSPSRLTTVSYGKERPIDPRSNEEGWARNRNAHTNLMSG 186          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A2G2IZC2_9PROT (Peptidoglycan-associated protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2IZC2_9PROT)

HSP 1 Score: 170 bits (431), Expect = 1.320e-50
Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 1
Query:  190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570
            P+PG+++DF + S GE R++F YNQYDL P A DVLRRQA WLN+Y  A  ++ GNADERGTREYNLALGARRA++V+ FLVSQGV+P R+ T+SYGKERPIDG  N   WA NRN  +++ +GG+S
Sbjct:   61 PLPGTVDDFKYTS-GEDRIYFAYNQYDLVPVARDVLRRQAQWLNMYPSAILIVGGNADERGTREYNLALGARRADAVKAFLVSQGVAPGRITTVSYGKERPIDGGSNEAAWALNRNAHSSVLIGGNS 186          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A2G2N0S8_9PROT (Peptidoglycan-associated protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2N0S8_9PROT)

HSP 1 Score: 165 bits (417), Expect = 1.850e-48
Identity = 89/190 (46.84%), Postives = 113/190 (59.47%), Query Frame = 1
Query:    1 YLMAGAALLILSACATQPDPVAELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570
            +L+    +L LSAC + PDP                                 V+ PG     P PG+ E F + S G+ RV+F YN+YDL+P A +VLR QANWL  Y  A  V+ GNADERGTREYNLALGARRA++V+ F VSQG+ P R+ T+SYGKERPIDGR N + WA NRN  + + +GG+S
Sbjct:    5 FLLMSVVVLTLSACVSTPDPAPVKQQVQTQAPIFEPEPEAPEAPEIIEVPVEAVIPPG-----PQPGTSEHFKYTS-GDDRVYFDYNKYDLTPRAREVLRSQANWLERYDGAIIVVGGNADERGTREYNLALGARRADAVKAFFVSQGIEPGRITTVSYGKERPIDGRSNEEAWAINRNAHSAVLVGGTS 188          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A7C5R0E1_9PROT (Peptidoglycan-associated protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5R0E1_9PROT)

HSP 1 Score: 163 bits (412), Expect = 1.060e-47
Identity = 90/183 (49.18%), Postives = 113/183 (61.75%), Query Frame = 1
Query:   22 LLILSACATQPDPVAELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570
            +L L ACAT+P PV  +  P                           V  G     P PG++ DF + S G+ RV+FG+++YDL+P+A + LRRQA WLN Y  A  VI GNADERGTREYNLALGARRAES + FLVS+GV+P R+ T+SYGKERPID   N   WARNRN  + + +GG+S
Sbjct:   12 MLALGACATKPKPVEVVEQPAQTQPAPEVFQPAPVEPVEQVPNAPINVYNG-----PTPGTVADFKY-SAGDDRVYFGFDRYDLTPQARETLRRQAEWLNRYPTAIVVIGGNADERGTREYNLALGARRAESTKAFLVSKGVNPGRITTVSYGKERPIDPGSNEAAWARNRNAHSAVMVGGNS 188          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A520XF70_9ACTN (Peptidoglycan-associated protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XF70_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 4.520e-47
Identity = 94/199 (47.24%), Postives = 123/199 (61.81%), Query Frame = 1
Query:    1 YLMAGAALLILSACATQPD--------PVA-ELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570
            Y++ G+  L LSACA+ P+        PV  ELPPP                          VVQ    +  P PG+ E F + S G+ RV+FGY++YDLS +A DVLR+Q+ WLN Y  A  V+ GN DERGTREYNLALGARRA++V+ FLVSQGV+P+R+ T+SYGKERPI G  N   WA NRN  +++ +GG++
Sbjct:    5 YILLGSIALTLSACASTPEVEEVVETEPVQQELPPPVVEPAPEPVVQAPP------------VVQ--EVYTGPPPGTAEHFKYVS-GDDRVYFGYDRYDLSSQARDVLRKQSEWLNQYGQAIVVVGGNCDERGTREYNLALGARRADAVKAFLVSQGVNPSRITTVSYGKERPIAGESNEAAWALNRNAHSSVMVGGNT 188          
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: UPI00036EAF9E (OmpA family protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00036EAF9E)

HSP 1 Score: 159 bits (401), Expect = 5.330e-46
Identity = 78/127 (61.42%), Postives = 97/127 (76.38%), Query Frame = 1
Query:  190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570
            PIPGS++DF  ++G   RVFFGY+Q  LSP+A+ VLR QA+WL  Y  A  +I G+ADERGTREYNLALGARRAE+V+ FLV Q ++PNR+ T+SYGKERPIDGR   + WA NRNG T +  G +S
Sbjct:   67 PIPGSIQDFVERAGD--RVFFGYDQDTLSPQAMQVLRAQASWLQNYPGAVIIIGGHADERGTREYNLALGARRAEAVKSFLVGQSIAPNRMSTVSYGKERPIDGRSTEEAWALNRNGHTAIVSGTNS 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167C3CC23.370e-7466.13peptidoglycan-associated lipoprotein Pal n=1 Tax=L... [more]
UPI00040916235.350e-5955.26peptidoglycan-associated lipoprotein Pal n=1 Tax=H... [more]
A0A420WL91_9PROT9.180e-5971.65Peptidoglycan-associated protein n=1 Tax=Litorimon... [more]
A0A8J3CKN8_9PROT1.070e-5667.72Peptidoglycan-associated lipoprotein n=2 Tax=Algim... [more]
A0A848V2D8_9PROT5.470e-5370.16Peptidoglycan-associated protein n=1 Tax=Hellea sp... [more]
A0A2G2IZC2_9PROT1.320e-5062.99Peptidoglycan-associated protein n=1 Tax=Robiginit... [more]
A0A2G2N0S8_9PROT1.850e-4846.84Peptidoglycan-associated protein n=1 Tax=Robiginit... [more]
A0A7C5R0E1_9PROT1.060e-4749.18Peptidoglycan-associated protein n=1 Tax=Hellea ba... [more]
A0A520XF70_9ACTN4.520e-4747.24Peptidoglycan-associated protein n=2 Tax=Bacteria ... [more]
UPI00036EAF9E5.330e-4661.42OmpA family protein n=1 Tax=Robiginitomaculum anta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101159contigP-canaliculata_contig101159:420..992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score193.7
Seed ortholog evalue7.6e-47
Seed eggNOG ortholog1121948.AUAC01000003_gene2649
Preferred namepal
KEGG koko:K03640
KEGG TC2.C.1.2
EggNOG free text desc.Belongs to the ompA family
EggNOG OGs1MZTV@1224,2U758@28211,43XZZ@69657,COG2885@1,COG2885@2
COG Functional cat.M
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons1
Model size573
Cds size567
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.1359775-UTR-P-canaliculata_contig101159:419..4251622815585.1359775-UTR-P-canaliculata_contig101159:419..425Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101159 420..425 +
1693494151.290633-UTR-P-canaliculata_contig101159:419..4251693494151.290633-UTR-P-canaliculata_contig101159:419..425Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101159 420..425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.1462774-CDS-P-canaliculata_contig101159:425..9921622815585.1462774-CDS-P-canaliculata_contig101159:425..992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101159 426..992 +
1693494151.3036585-CDS-P-canaliculata_contig101159:425..9921693494151.3036585-CDS-P-canaliculata_contig101159:425..992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101159 426..992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101159.204.1prot_P-canaliculata_contig101159.204.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101159 426..992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101159.204.1

>prot_P-canaliculata_contig101159.204.1 ID=prot_P-canaliculata_contig101159.204.1|Name=mRNA_P-canaliculata_contig101159.204.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=189bp
MAGAALLILSACATQPDPVAELPPPAPVTQAPPPQVFQPAPPPAVVQQAP
QVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQ
ANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPN
RLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS*
back to top

mRNA from alignment at P-canaliculata_contig101159:420..992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101159.204.1 ID=mRNA_P-canaliculata_contig101159.204.1|Name=mRNA_P-canaliculata_contig101159.204.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at P-canaliculata_contig101159:420..992+ (Pelvetia canaliculata dioecious)
TATCTGATGGCCGGCGCAGCCCTGTTAATTCTGAGCGCATGTGCAACCCA ACCCGATCCCGTGGCGGAGCTCCCTCCGCCCGCGCCCGTGACACAAGCGC CGCCGCCACAGGTCTTTCAGCCTGCGCCGCCACCCGCTGTCGTTCAACAA GCCCCGCAGGTGGTGCAGCCCGGTTCCGGTTTTATTCCGCCAATTCCGGG ATCGCTCGAGGATTTCGCTTTTCAATCCGGCGGGGAGCCCCGCGTCTTCT TTGGCTATAATCAATATGATCTGTCCCCCGAAGCTTTGGACGTCCTGCGG CGTCAGGCGAATTGGCTGAATATCTACCAAGACGCAACAGCCGTAATCGA AGGCAATGCCGACGAACGCGGTACACGGGAATATAATCTGGCCTTAGGCG CGCGCCGCGCGGAAAGCGTGCAAGATTTCCTCGTCAGTCAGGGAGTTTCG CCCAATCGTTTGCGGACAATCTCCTACGGGAAAGAACGCCCGATTGATGG CCGCCCCAATGCGGATGGATGGGCACGCAATCGCAATGGCTTTACCAATC TGCGCTTAGGTGGCTCAAGCTAA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig101159:420..992+

>mRNA_P-canaliculata_contig101159.204.1 ID=mRNA_P-canaliculata_contig101159.204.1|Name=mRNA_P-canaliculata_contig101159.204.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at P-canaliculata_contig101159:420..992+ (Pelvetia canaliculata dioecious)
ATGGCCGGCGCAGCCCTGTTAATTCTGAGCGCATGTGCAACCCAACCCGA
TCCCGTGGCGGAGCTCCCTCCGCCCGCGCCCGTGACACAAGCGCCGCCGC
CACAGGTCTTTCAGCCTGCGCCGCCACCCGCTGTCGTTCAACAAGCCCCG
CAGGTGGTGCAGCCCGGTTCCGGTTTTATTCCGCCAATTCCGGGATCGCT
CGAGGATTTCGCTTTTCAATCCGGCGGGGAGCCCCGCGTCTTCTTTGGCT
ATAATCAATATGATCTGTCCCCCGAAGCTTTGGACGTCCTGCGGCGTCAG
GCGAATTGGCTGAATATCTACCAAGACGCAACAGCCGTAATCGAAGGCAA
TGCCGACGAACGCGGTACACGGGAATATAATCTGGCCTTAGGCGCGCGCC
GCGCGGAAAGCGTGCAAGATTTCCTCGTCAGTCAGGGAGTTTCGCCCAAT
CGTTTGCGGACAATCTCCTACGGGAAAGAACGCCCGATTGATGGCCGCCC
CAATGCGGATGGATGGGCACGCAATCGCAATGGCTTTACCAATCTGCGCT
TAGGTGGCTCAAGCTAAATGGCCGGCGCAGCCCTGTTAATTCTGAGCGCA
TGTGCAACCCAACCCGATCCCGTGGCGGAGCTCCCTCCGCCCGCGCCCGT
GACACAAGCGCCGCCGCCACAGGTCTTTCAGCCTGCGCCGCCACCCGCTG
TCGTTCAACAAGCCCCGCAGGTGGTGCAGCCCGGTTCCGGTTTTATTCCG
CCAATTCCGGGATCGCTCGAGGATTTCGCTTTTCAATCCGGCGGGGAGCC
CCGCGTCTTCTTTGGCTATAATCAATATGATCTGTCCCCCGAAGCTTTGG
ACGTCCTGCGGCGTCAGGCGAATTGGCTGAATATCTACCAAGACGCAACA
GCCGTAATCGAAGGCAATGCCGACGAACGCGGTACACGGGAATATAATCT
GGCCTTAGGCGCGCGCCGCGCGGAAAGCGTGCAAGATTTCCTCGTCAGTC
AGGGAGTTTCGCCCAATCGTTTGCGGACAATCTCCTACGGGAAAGAACGC
CCGATTGATGGCCGCCCCAATGCGGATGGATGGGCACGCAATCGCAATGG
CTTTACCAATCTGCGCTTAGGTGGCTCAAGCTAA
back to top