prot_P-canaliculata_contig10111.200.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10111.200.1
Unique Nameprot_P-canaliculata_contig10111.200.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length695
Homology
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 3.470e-82
Identity = 293/686 (42.71%), Postives = 349/686 (50.87%), Query Frame = 0
Query:    1 MALLGDDEGGVVPFDMTE--DGEDWFQFSLDNLEMDRGCSP-LRQEANLMEQEAIDFGDTDQDDDVDEIFHAGVSGPGPPDREDGASGRVSGSG--NIPRPGSRGSHPGVTSTREVVMNKPAKQQQQT--AARGVPIPPAKSGLEKIKSEAIEVQGAEDQSKLAAESAA-AKRNSRASRSEAKIRHRT-------AGGMAGGVGGMPGRAE-TASMSSSKDRSEGRPVGSKAMSTSTAGXXXXX------------------------APTRVNSVQNRRRLERNAREQKRSLKISQRIEDLRRMLTQFGVDVKASKSAVLSEATDYIAHLQRQQAQSEAERARLLTLLQNAKNELAARVTSVSSXXXXXXXXXXXXXXXXXXXXXXNQ---------------TMVESPTTPDARKRTLPFNSLAAXXXXXXXXXXXXXXRQMAQTAGTVEGLSGCETHPAQKSWMMEEPTETTEQQSLSAQNRQRSLLVVAGPSVPGQGSAAGLIPASGVVASGLMPTAAVPVAAAAVPLRTPVPPPALASTVVAAGEGTTEVSEATARALSHVDYEGVFRTVPLPMAIANVNGNLVDCNARLTQVTGFRREEALFLSIFDLVADAFLQHTFSMISSILSLRGVA-NPPFFQVVGKRRDGS-SAGMVRISVVQDDALRPLHFCVCVMESAAGAG 629
            MAL GD++G V PF M E   G++WF FSLDNLEMDR C+  L+ ++  M+Q+                                           N  R   +              +  AK QQ    A +GV +   K  L+K+K EA EV  + D+ +  +E+AA AKR+SR                   AGGMAGGVGGM GR E  A  ++S D            ST T G XXXX                        + T+  +VQN+RRLERNAREQKRSLKISQRIEDLRRML+QFGVDVKASKSAVLSEATDYIAHLQRQ AQSEAERAR+L LL N++            XXXXXXXXXXXXXXXXXXXXXX                  +VE P++       L  +                            +G  G  T     +  M  P  T  QQ           +V   PS+    SA     A G      MP A    A AA                            ATARALSHV+YE VFRT+P+PMAIANVNGNLVDCN RLTQVTGFR+EEALF++IFDLVAD FLQHTFSMISSILS+RGV  NPPFFQV GK  +G+   G+V+IS V DD LRP+HFC+C+++S A  G
Sbjct:    1 MALFGDEDGDVGPFVMAEVEGGDEWFPFSLDNLEMDRACNASLQDDSRPMDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWNEDRYQQQDGXXXXXXXXXXXADSNAKVQQGRGGARKGVVVSEPKIRLDKVKPEAKEVHASHDRKRHTSEAAAPAKRSSRGEXXXXXXXXXXXXXXXXPAGGMAGGVGGMTGRVEGQAGWTTSSDTKH---------STRTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDRGAGVGVVVERPSSNTMLDTLLSLDD---------------------------DGDMGRPTSAMTAARAMVFPPPTPPQQG-------EEQIVPGFPSL----SATARRGADG------MPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGG 633          
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.040e-20
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 0
Query:  511 VDYEGVFRTVPLPMAIANVNGNLVDCNARLTQVTGFRREEALFLSIFDLVADAFLQHTFSMISSILSLRGVANPPFFQ------VVGKRRDGSSAGMVRISVVQDDALRPLHFCV 619
            +DY+ +F    +P+A+ +VNGN+VDCNAR+   TG+RREE L L++F+LVADAFLQ +F++IS +L++ G A     Q      +  K RDG   G++ I++V+D+ LRP  F +
Sbjct:  188 MDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQPGGVLSIALVRDELLRPRFFAI 302          
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.210e-20
Identity = 47/111 (42.34%), Postives = 75/111 (67.57%), Query Frame = 0
Query:  511 VDYEGVFRTVPLPMAIANVNGNLVDCNARLTQVTGFRREEALFLSIFDLVADAFLQHTFSMISSILSLRGVANPP--FFQVVGKRRDGSSAGMVRISVVQDDALRPLHFCV 619
            +DY+ +F    +P+A+ ++NGN+V+CN+R+   TGFRR+E L L++F+LVADA+LQ +F++IS  LS    A  P     +  K RDG   G++ +S+V+DD +RP  F +
Sbjct:  150 MDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAI 260          
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.250e-6
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0
Query:  239 RRRLERNAREQKRSLKISQRIEDLRRMLTQFGVDVKASKSAVLSEATDYIAHLQRQQAQSEAERARLLTLL 309
            +RR ERN REQKRSLKIS++I++L  +LT  G  VKA+KS++L EA  YI HLQ   A+ E ER++ + +L
Sbjct:  101 KRRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNIL 171          
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: A0A7R9U539_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U539_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.130e-6
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 0
Query:  239 RRRLERNAREQKRSLKISQRIEDLRRMLTQFGVDVKASKSAVLSEATDYIAHLQRQQAQSEAERARLLTLLQNAKNEL 316
            RRR ERN REQ+RSLKIS++I++L  +LT  G +VK +KSA+L++A  YI +LQ   A+ E ER + + +L    N +
Sbjct:  156 RRRKERNQREQRRSLKISKKIDELHEILTGSGRNVKPNKSAILNDAHQYIQYLQSTMARKEFERNQFVDVLTMGGNNM 233          
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: A0A7R9W9V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9V5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.130e-5
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 0
Query:  240 RRLERNAREQKRSLKISQRIEDLRRMLTQFGVDV-KASKSAVLSEATDYIAHLQRQQAQSEAERARLLTLLQ 310
            +R ERNARE++RS +IS++I +LR +L+  GV V K +KSAVL+EA +YI  LQ+ Q +SE +R  L+  +Q
Sbjct:   41 KREERNAREKERSFRISRQINELRNLLSSGGVIVPKGTKSAVLTEAANYIRMLQQHQYRSEIDRQHLVQQMQ 112          
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.050e-5
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 0
Query:  235 SVQNRRRLERNAREQKRSLKISQRIEDLRRMLTQFGVDVKASKSAVLSEATDYIAHLQRQQAQSEA 300
            S  ++RRL+RNAREQ+RS KI+ +I+ LR++L   G  VK++KS+VLSE  DYI  LQ+++   EA
Sbjct:  457 SAPDKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEA 522          
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Match: A0A7S3KX76_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX76_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.620e-5
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 0
Query:  232 RVNSVQNRRRLERNAREQKRSLKISQRIEDLRRMLTQFGVDV-KASKSAVLSEATDYIAHLQRQQAQSEAERARLLTLLQ 310
            R   +  R+R+ERNARE++RS +IS++I +LR +L+  GV V K +KS+VL+EA +YI  LQ+ Q +SE +R +L+  +Q
Sbjct:  227 RKKRLDERKRVERNAREKERSFRISKQINELRGLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLIQQMQ 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10111.200.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LJ51_ECTSI3.470e-8242.71N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT... [more]
A0A835Z815_9STRA1.040e-2044.35BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YRU1_9STRA1.210e-2042.34BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S1XXW7_9STRA1.250e-653.52Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U539_9STRA6.130e-647.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9W9V5_9STRA2.130e-550.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2CTA7_9STRA9.050e-551.52Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S3KX76_9STRA9.620e-546.25Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 239..259
NoneNo IPR availableCOILSCoilCoilcoord: 295..315
NoneNo IPR availableGENE3D3.30.450.20coord: 509..619
e-value: 8.3E-7
score: 30.9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 245..297
e-value: 1.2E-9
score: 48.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 240..292
e-value: 1.7E-10
score: 40.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 239..291
score: 12.995
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 513..598
e-value: 9.2E-7
score: 27.0
IPR000014PAS domainPROSITEPS50112PAScoord: 509..552
score: 9.234
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 231..325
e-value: 1.0E-12
score: 49.7
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 238..307
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 512..618

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10111contigP-canaliculata_contig10111:5839..11090 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10111.200.1mRNA_P-canaliculata_contig10111.200.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10111 5700..11354 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10111.200.1 ID=prot_P-canaliculata_contig10111.200.1|Name=mRNA_P-canaliculata_contig10111.200.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=695bp
MALLGDDEGGVVPFDMTEDGEDWFQFSLDNLEMDRGCSPLRQEANLMEQE
AIDFGDTDQDDDVDEIFHAGVSGPGPPDREDGASGRVSGSGNIPRPGSRG
SHPGVTSTREVVMNKPAKQQQQTAARGVPIPPAKSGLEKIKSEAIEVQGA
EDQSKLAAESAAAKRNSRASRSEAKIRHRTAGGMAGGVGGMPGRAETASM
SSSKDRSEGRPVGSKAMSTSTAGGGGGGAPTRVNSVQNRRRLERNAREQK
RSLKISQRIEDLRRMLTQFGVDVKASKSAVLSEATDYIAHLQRQQAQSEA
ERARLLTLLQNAKNELAARVTSVSSSGGVGGGEVINSAAALVAAASTNQT
MVESPTTPDARKRTLPFNSLAAATAGATTTGSGGGGRQMAQTAGTVEGLS
GCETHPAQKSWMMEEPTETTEQQSLSAQNRQRSLLVVAGPSVPGQGSAAG
LIPASGVVASGLMPTAAVPVAAAAVPLRTPVPPPALASTVVAAGEGTTEV
SEATARALSHVDYEGVFRTVPLPMAIANVNGNLVDCNARLTQVTGFRREE
ALFLSIFDLVADAFLQHTFSMISSILSLRGVANPPFFQVVGKRRDGSSAG
MVRISVVQDDALRPLHFCVCVMESAAGAGGLGVGAGGTPGVAASAAPSGG
FVTPMRGVGGGRDNGGCGIAAGTGVSGAGGGSEGGGRIGGGGAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR000014PAS
IPR036638HLH_DNA-bd_sf
IPR035965PAS-like_dom_sf