mRNA_P-canaliculata_contig101098.196.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101098.196.1
Unique NamemRNA_P-canaliculata_contig101098.196.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Match: UPI001E3A5239 (hypothetical protein n=1 Tax=Sphingomonas sp. Leaf4 TaxID=2876553 RepID=UPI001E3A5239)

HSP 1 Score: 48.1 bits (113), Expect = 4.080e-5
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:    7 ILHTQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGV-SRIFCQKKSIDMLKHENLITPKQAKKLKSAYLVVTEDGTLITA 246
            I  T+H  +RL QRA+   VVS  L+YG+      G+ S IF +   +D+         K  +K ++AYL+V+E G LITA
Sbjct:    4 ITRTKHFTQRLQQRALTEAVVSALLHYGERRSSRHGIDSLIFTKTALVDINNELGSAVFKACEKRRNAYLIVSEQGMLITA 84
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BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Match: A0A3N1R6B0_9GAMM (Uncharacterized protein DUF4258 n=1 Tax=Marinobacter sp. 3-2 TaxID=2485141 RepID=A0A3N1R6B0_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 6.400e-5
Identity = 26/87 (29.89%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:   16 TQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGVSRIFCQKKSIDMLKHENLITPKQAKKLKSAYLVVTEDGTLITAGYLSKAAKRS 276
            T+H  +R  QR +    + +AL YG+  E  GG S +   K+    L  E     +   + +  +LVV +DG+L+TAG+ +K  + +
Sbjct:   11 TKHCEERAIQRGLTDSAIDMALKYGEVYEQKGGASLVKLTKRQRKALMKELKNLMRILNREQDMFLVVGDDGSLVTAGWQNKRIRHN 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001E3A52394.080e-538.27hypothetical protein n=1 Tax=Sphingomonas sp. Leaf... [more]
A0A3N1R6B0_9GAMM6.400e-529.89Uncharacterized protein DUF4258 n=1 Tax=Marinobact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101098contigP-canaliculata_contig101098:391..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.5056553-CDS-P-canaliculata_contig101098:390..6841622815584.5056553-CDS-P-canaliculata_contig101098:390..684Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101098 391..684 -
1693494150.959004-CDS-P-canaliculata_contig101098:390..6841693494150.959004-CDS-P-canaliculata_contig101098:390..684Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101098 391..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101098.196.1prot_P-canaliculata_contig101098.196.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101098 391..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101098.196.1

>prot_P-canaliculata_contig101098.196.1 ID=prot_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=98bp
MMILHTQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGVSRIFCQKKSID
MLKHENLITPKQAKKLKSAYLVVTEDGTLITAGYLSKAAKRSNWKYT*
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mRNA from alignment at P-canaliculata_contig101098:391..684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101098.196.1 ID=mRNA_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at P-canaliculata_contig101098:391..684- (Pelvetia canaliculata dioecious)
ATGATGATATTACATACACAACACAGTCTAAAACGCTTAGCACAGCGAGC
TATCCCATCTGAAGTAGTTTCCTTGGCATTGAATTACGGTGATTGTGTGG
AGCTTCCTGGCGGAGTGAGCCGTATTTTTTGTCAAAAGAAAAGTATAGAT
ATGCTTAAGCACGAAAACCTTATTACACCCAAACAAGCTAAAAAGCTTAA
GTCAGCCTATCTAGTAGTGACTGAAGACGGCACGCTGATAACCGCGGGGT
ATCTATCAAAAGCAGCTAAGCGCTCTAACTGGAAATATACGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101098:391..684-

>mRNA_P-canaliculata_contig101098.196.1 ID=mRNA_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at P-canaliculata_contig101098:391..684- (Pelvetia canaliculata dioecious)
ATGATGATATTACATACACAACACAGTCTAAAACGCTTAGCACAGCGAGC
TATCCCATCTGAAGTAGTTTCCTTGGCATTGAATTACGGTGATTGTGTGG
AGCTTCCTGGCGGAGTGAGCCGTATTTTTTGTCAAAAGAAAAGTATAGAT
ATGCTTAAGCACGAAAACCTTATTACACCCAAACAAGCTAAAAAGCTTAA
GTCAGCCTATCTAGTAGTGACTGAAGACGGCACGCTGATAACCGCGGGGT
ATCTATCAAAAGCAGCTAAGCGCTCTAACTGGAAATATACGTGAATGATG
ATATTACATACACAACACAGTCTAAAACGCTTAGCACAGCGAGCTATCCC
ATCTGAAGTAGTTTCCTTGGCATTGAATTACGGTGATTGTGTGGAGCTTC
CTGGCGGAGTGAGCCGTATTTTTTGTCAAAAGAAAAGTATAGATATGCTT
AAGCACGAAAACCTTATTACACCCAAACAAGCTAAAAAGCTTAAGTCAGC
CTATCTAGTAGTGACTGAAGACGGCACGCTGATAACCGCGGGGTATCTAT
CAAAAGCAGCTAAGCGCTCTAACTGGAAATATACGTGA
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