mRNA_P-canaliculata_contig101066.192.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101066.192.1
Unique NamemRNA_P-canaliculata_contig101066.192.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101066.192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101066contigP-canaliculata_contig101066:373..810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size255
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.0960896-UTR-P-canaliculata_contig101066:372..5551622815584.0960896-UTR-P-canaliculata_contig101066:372..555Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101066 373..555 +
1693494150.6935916-UTR-P-canaliculata_contig101066:372..5551693494150.6935916-UTR-P-canaliculata_contig101066:372..555Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101066 373..555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.1063838-CDS-P-canaliculata_contig101066:555..8101622815584.1063838-CDS-P-canaliculata_contig101066:555..810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101066 556..810 +
1693494150.7101448-CDS-P-canaliculata_contig101066:555..8101693494150.7101448-CDS-P-canaliculata_contig101066:555..810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101066 556..810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101066.192.1prot_P-canaliculata_contig101066.192.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101066 556..810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101066.192.1

>prot_P-canaliculata_contig101066.192.1 ID=prot_P-canaliculata_contig101066.192.1|Name=mRNA_P-canaliculata_contig101066.192.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=85bp
MFVGMLLRTDNHAATRSTLYSVRQDGSENEIDDEAVSVRVQHSYSLEDKV
DMYPWKHVAEPHRKTVMQVTSWPDDAREEDVEFR*
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mRNA from alignment at P-canaliculata_contig101066:373..810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101066.192.1 ID=mRNA_P-canaliculata_contig101066.192.1|Name=mRNA_P-canaliculata_contig101066.192.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig101066:373..810+ (Pelvetia canaliculata dioecious)
AAGATGTTGGAAGAAAGGGATTTTCCGGACAGAACCCAAAGTTATTCCAT
GTCATCAATATTATCTGGTCATCTCTTCAGTCCCAGACCGTCAGACAAGG
GCAATTCAAGTCACTGCATGATGCGCCGGAAGGCGTCATGGAGGTCCATC
GCCGCTGTGGCGAGTGTGTACGCTTTGACATGAATGTTTGTTGGGATGCT
GCTAAGAACCGATAACCACGCTGCGACACGTTCAACGCTGTACTCTGTTC
GACAAGATGGTTCTGAGAATGAAATTGACGACGAAGCAGTTAGTGTACGA
GTCCAGCATTCCTACAGTTTGGAAGACAAGGTCGATATGTATCCTTGGAA
GCATGTGGCAGAGCCGCACAGAAAGACTGTTATGCAGGTGACGAGCTGGC
CCGATGATGCACGCGAGGAAGACGTTGAATTCAGGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101066:373..810+

>mRNA_P-canaliculata_contig101066.192.1 ID=mRNA_P-canaliculata_contig101066.192.1|Name=mRNA_P-canaliculata_contig101066.192.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at P-canaliculata_contig101066:373..810+ (Pelvetia canaliculata dioecious)
ATGTTTGTTGGGATGCTGCTAAGAACCGATAACCACGCTGCGACACGTTC
AACGCTGTACTCTGTTCGACAAGATGGTTCTGAGAATGAAATTGACGACG
AAGCAGTTAGTGTACGAGTCCAGCATTCCTACAGTTTGGAAGACAAGGTC
GATATGTATCCTTGGAAGCATGTGGCAGAGCCGCACAGAAAGACTGTTAT
GCAGGTGACGAGCTGGCCCGATGATGCACGCGAGGAAGACGTTGAATTCA
GGTGAATGTTTGTTGGGATGCTGCTAAGAACCGATAACCACGCTGCGACA
CGTTCAACGCTGTACTCTGTTCGACAAGATGGTTCTGAGAATGAAATTGA
CGACGAAGCAGTTAGTGTACGAGTCCAGCATTCCTACAGTTTGGAAGACA
AGGTCGATATGTATCCTTGGAAGCATGTGGCAGAGCCGCACAGAAAGACT
GTTATGCAGGTGACGAGCTGGCCCGATGATGCACGCGAGGAAGACGTTGA
ATTCAGGTGA
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