mRNA_P-canaliculata_contig101050.191.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101050.191.1
Unique NamemRNA_P-canaliculata_contig101050.191.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101050.191.1 vs. uniprot
Match: A0A851GMS5_9BACT (Uncharacterized protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GMS5_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 5.510e-17
Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = 1 
Query:    1 IKNKAGKSISAELISLDGDHVKMRKSAGRRDFIVPLHTLDPKSATLIRKEAAAMPEVMPDIEIDVSVSTRRRKDGKSTYVKAMTVGGKVIIENEDLEHKFPASKARIVFVGQDQRYPEKYQVLGTQDF 384
            I +K G+++  EL+S  G+ V +++    + F +   TL  +S   I+++   + E  P I+  V VS RR+ +  S Y+K MT+  KV + NED     P  +  I+F+GQ+QRY +++ VL  + F
Sbjct:   25 ISDKKGRTMIVELVSRQGEKVVIKRLKDNKTFTIDPSTLSEESQQEIKEKLQEVKEAYPPIDATVVVSKRRKSENSSYYMKEMTISSKVTLTNEDSNVLSPTCQCNILFIGQNQRYSDRFVVLANESF 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101050.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A851GMS5_9BACT5.510e-1732.81Uncharacterized protein n=1 Tax=Oceaniferula marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101050contigP-canaliculata_contig101050:6..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.0584533-CDS-P-canaliculata_contig101050:5..3921622815584.0584533-CDS-P-canaliculata_contig101050:5..392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101050 6..392 -
1693494150.6815796-CDS-P-canaliculata_contig101050:5..3921693494150.6815796-CDS-P-canaliculata_contig101050:5..392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101050 6..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101050.191.1prot_P-canaliculata_contig101050.191.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101050 6..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101050.191.1

>prot_P-canaliculata_contig101050.191.1 ID=prot_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=129bp
IKNKAGKSISAELISLDGDHVKMRKSAGRRDFIVPLHTLDPKSATLIRKE
AAAMPEVMPDIEIDVSVSTRRRKDGKSTYVKAMTVGGKVIIENEDLEHKF
PASKARIVFVGQDQRYPEKYQVLGTQDFD
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mRNA from alignment at P-canaliculata_contig101050:6..392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101050.191.1 ID=mRNA_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at P-canaliculata_contig101050:6..392- (Pelvetia canaliculata dioecious)
ATAAAAAATAAAGCCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGA
TGGCGACCATGTGAAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCG
TCCCCTTGCACACGCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAG
GCTGCCGCCATGCCGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGT
AAGTACGAGGCGGCGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGA
CGGTGGGCGGGAAAGTGATCATCGAAAACGAGGATCTGGAACACAAATTC
CCAGCATCGAAGGCGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCC
TGAAAAGTATCAGGTTCTAGGAACACAGGACTTTGAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig101050:6..392-

>mRNA_P-canaliculata_contig101050.191.1 ID=mRNA_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig101050:6..392- (Pelvetia canaliculata dioecious)
ATAAAAAATAAAGCCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGA
TGGCGACCATGTGAAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCG
TCCCCTTGCACACGCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAG
GCTGCCGCCATGCCGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGT
AAGTACGAGGCGGCGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGA
CGGTGGGCGGGAAAGTGATCATCGAAAACGAGGATCTGGAACACAAATTC
CCAGCATCGAAGGCGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCC
TGAAAAGTATCAGGTTCTAGGAACACAGGACTTTGACATAAAAAATAAAG
CCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGATGGCGACCATGTG
AAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCGTCCCCTTGCACAC
GCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAGGCTGCCGCCATGC
CGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGTAAGTACGAGGCGG
CGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGACGGTGGGCGGGAA
AGTGATCATCGAAAACGAGGATCTGGAACACAAATTCCCAGCATCGAAGG
CGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCCTGAAAAGTATCAG
GTTCTAGGAACACAGGACTTTGAC
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