mRNA_P-canaliculata_contig101018.189.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101018.189.1
Unique NamemRNA_P-canaliculata_contig101018.189.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A2D5ATM3_9BACT (Cytochrome c domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5ATM3_9BACT)

HSP 1 Score: 165 bits (417), Expect = 7.310e-42
Identity = 125/341 (36.66%), Postives = 165/341 (48.39%), Query Frame = 1
Query:    1 PNKVWPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGATNYLKGAFSEPADLVIDSSSGQAFVSCMGSDSVFQIDLSGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFL-------SLHGGNLYVAPFLSGNNTL-TFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDGMPDADLICIDLDQPASTQISTVIRRAGSMLTAHGFHPTSDEVWMLGMYSKNLDEN--TEPDFKGDFARNTLVVRPLA----SGAPPVTIDPSSGTIDLDQ-----PG--YSESKSLPLPYALEFGGPNGLTAIASSTLSRISLRDS 960
            P + W TV++PV+I+ Y   + V+GQG HALA+ D  DG I+ + A           SEPAD+V+D+ + +A+VSCMG D V QIDLS  M   + W    G                L +KRPRFL       S     +YVAP +SGNNT+  F  G  P        DI++G             T L   G+PD DL  I        Q+  VIR AGS+L  HG +P + + WM+G+   NL+    +EP  +G FA N L +   A     G+PP   D     IDLD      PG  Y   +S+  PYAL F    G  AIA+ST   + L DS
Sbjct:  101 PTQRWRTVSNPVSIAAYAEDLLVVGQGNHALARHDLPDGEIIDLLALP---------SEPADIVVDTDNDEAWVSCMGDDCVVQIDLSSPMRIKKIWSWDEG----------------LELKRPRFLFFDPQTPSPDDNLVYVAPMVSGNNTIFKFNTGPGP--------DIVDG-------------TSLPAGGLPDEDLFRIST---GPDQVEPVIRAAGSLLFGHGKNPVTGDYWMVGLDHLNLEPGMLSEPTVRGKFAMNQLAITSAALFSAGGSPPPEPD---SMIDLDDYDVAAPGAQYQSDRSVSFPYALAFEPGTGRAAIAASTSPLVVLTDS 389          
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A7C5J2T7_9DELT (Cytochrome c domain-containing protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5J2T7_9DELT)

HSP 1 Score: 128 bits (321), Expect = 3.790e-29
Identity = 102/322 (31.68%), Postives = 156/322 (48.45%), Query Frame = 1
Query:   13 WPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGATNYLKGAFSEPADLVIDSSSGQAFVSCMGSDSVFQIDLSGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFLSLHG-----GNLYVAPFLSGNNTLTFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDGMPDADLICIDLDQPASTQISTVIRRAGSMLTAHGFHPTSDEVWMLGMYSKNLDENTEPDFKGDFARNTLVVRPLASGAPPVTIDPSSGTIDLDQP----GYSESKSLPLPYALEFGGPNGLTAIASSTLSRISL 951
            WPT+ +PVAI+ +   + V+G  + +LA+ D   GRI +  A  A         EPAD+V+D+   +A+V+C G D V +IDL+ + TE  R                    Y++  +RPRFL L         +YVAPFLSGNNT T     +P       + +++           L   G+    +PD DL  ID  QPA + ++ V+  AG+++  HG +P + + W++   S N  +++E   +G FA+  L +  ++SG+ PV     +  IDLD P              P+AL F    G  AIASST   I+L
Sbjct:   91 WPTLHNPVAITEWRDSLLVVGGSSWSLAEHDRTTGRITRQVALAA---------EPADIVVDAIRDEAYVACQGDDVVVRIDLT-TFTENAR--------------------YAIPAERPRFLFLDELAVPTPLVYVAPFLSGNNT-TLARSPAP----EPRSTVLD-----------LKAPGIGWTSLPDEDLFVIDPTQPAGSAVTPVLHEAGTLIAEHGRNPATSDYWVISTESLNAAQHSEDKHRGRFAKAQLTIG-ISSGSRPVP----ATVIDLDVPIGXXXXXXXXXXSFPFALAFHS-TGYAAIASSTGDLITL 360          
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A2D5AW94_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AW94_9BACT)

HSP 1 Score: 116 bits (290), Expect = 4.520e-25
Identity = 100/334 (29.94%), Postives = 150/334 (44.91%), Query Frame = 1
Query:    1 PNKVWPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGATNYLKGAFSEPADLVIDSSSGQAFVSCMGSDSVFQIDLSGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFLSLHGGNLYVAPFLSGNNTLTFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDGMPDADLICIDLDQPASTQISTVIRRAGSMLTAHGFHPTSDEVWML--GMYSKNLDENTEPDFKGDFARNTLVV-RPLASGAPPVTIDPSSGTIDLDQPG-------YSESKSLPLPYALEFGGPN-----GLTAIASSTLSRISLRD 957
            P   WPT+ +PV++  +G  + VLG  TH+LA  D   G ++        + L    SEP DL++D ++G A++S    + V  +DL+ +   V   R  +   PGE       D + + ++R          L VAP LSGNNT            G  G +     A+    G  + ++G  N G+PD DL+ + L   AS  +    R AG+++  H  +P ++E W L   +++    +  E + +G FA N L +  P A G P    D     IDLD          YS   S+  PYAL F  P      G   IASST   ++L D
Sbjct:   89 PEASWPTLNNPVSMDVWGDRVVVLGGATHSLAIHDRFTGEVL------GHHELP---SEPGDLIMDETTGIAYISSQAENLVIALDLNNTNNIVELERHEI---PGEQPRFMYLDTHPISLERV---------LVVAPMLSGNNTAPLP--------GAIGVEFTREQAT----GEIVNVSGFANGGLPDEDLLVLPLVGGASPPVLPSGREAGTLMLEHARNPLTNEYWALTVDLHNDLPGQRGEDELRGIFASNNLAIFAPSALGVPR---DLPDRIIDLDDNDPSTAGAQYSSETSVSFPYALAFVPPTNDALAGWAGIASSTGDLVALLD 386          
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A521KRH2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KRH2_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 3.910e-11
Identity = 92/342 (26.90%), Postives = 149/342 (43.57%), Query Frame = 1
Query:   28 DPVAISFYGG--------HIYVLGQGTHALAKQDAADGRIVQVF------APGATNYLK-GAFSEPADLVIDSS--SGQ---AFVSCMGSDSVFQIDL-SGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFLSLHGGNL------YVAPFLSGNNTLTFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDG--MPDADLICIDLDQPASTQ--ISTVIRRAGSMLTAHGFHPTS-----DEVWMLGMYSKNLDENT--EPDFKGDFARN--TLVVRPLASGAPPVTIDPSSGTIDLDQPGYSESK--------SLPLPYALEFGGPNG 909
            DPV+++++ G         + V+ Q + A+A+ DA  G +  V        P A   ++ G+ +EPAD+++D +  SG+   AFVSC+G +SV QIDL +G +  V R    LG             +    +K P FLS     L       VAP  SGN++  ++ G +                      G +++T L   G  +PDADL  I     A+    +  V R  G++L AHG +P        E+W L   ++N       EP   G F+ N  T +  PLA+    +  + ++ +I LD P  + +         ++  PY++ F    G
Sbjct:   90 DPVSVAYWDGATSAPEDDEVLVVCQASWAIARVDATSGEMKSVIQLRESDGPIAGRPVRMGSMAEPADILVDDAPPSGENDRAFVSCIGGNSVLQIDLVTGQVVRVFREDRALGL------------DTEFQIKSPLFLSFEPAALGEARRVLVAPLQSGNSS-AWLGGTT----------------------GGVSVTDLVAAGSPLPDADLFRITPVSAATPNGLVEVVARATGTLLFAHGVNPLPTTAGHQELWQLNSDAQNKTTGLQGEPAIAGKFSFNRITRLRLPLAANGAGIP-NANATSISLDPPAMTGASGGSITTQTTVGQPYSIAFNSSYG 395          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D5ATM3_9BACT7.310e-4236.66Cytochrome c domain-containing protein n=1 Tax=Pla... [more]
A0A7C5J2T7_9DELT3.790e-2931.68Cytochrome c domain-containing protein n=1 Tax=Pol... [more]
A0A2D5AW94_9BACT4.520e-2529.94Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521KRH2_9BACT3.910e-1126.90Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101018contigP-canaliculata_contig101018:3..962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size960
Cds size960
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.9703205-CDS-P-canaliculata_contig101018:2..9621622815583.9703205-CDS-P-canaliculata_contig101018:2..962Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101018 3..962 -
1693494150.6522443-CDS-P-canaliculata_contig101018:2..9621693494150.6522443-CDS-P-canaliculata_contig101018:2..962Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101018 3..962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101018.189.1prot_P-canaliculata_contig101018.189.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101018 3..962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101018.189.1

>prot_P-canaliculata_contig101018.189.1 ID=prot_P-canaliculata_contig101018.189.1|Name=mRNA_P-canaliculata_contig101018.189.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=320bp
PNKVWPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGAT
NYLKGAFSEPADLVIDSSSGQAFVSCMGSDSVFQIDLSGSMTEVRRWRTG
LGAFPGEHITHGGADEYSLGVKRPRFLSLHGGNLYVAPFLSGNNTLTFME
GDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDGMPDADLICIDLDQ
PASTQISTVIRRAGSMLTAHGFHPTSDEVWMLGMYSKNLDENTEPDFKGD
FARNTLVVRPLASGAPPVTIDPSSGTIDLDQPGYSESKSLPLPYALEFGG
PNGLTAIASSTLSRISLRDS
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mRNA from alignment at P-canaliculata_contig101018:3..962-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101018.189.1 ID=mRNA_P-canaliculata_contig101018.189.1|Name=mRNA_P-canaliculata_contig101018.189.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=960bp|location=Sequence derived from alignment at P-canaliculata_contig101018:3..962- (Pelvetia canaliculata dioecious)
CCCAACAAGGTCTGGCCGACTGTCACGGACCCCGTGGCGATCAGCTTCTA CGGAGGGCACATCTACGTCTTAGGGCAAGGAACGCACGCTCTAGCCAAGC AAGACGCCGCCGACGGGCGCATTGTGCAGGTCTTTGCACCGGGGGCCACG AACTACCTCAAAGGTGCCTTTTCTGAGCCCGCTGATCTTGTGATCGATAG CAGCTCCGGTCAGGCTTTCGTGTCGTGCATGGGCTCTGACTCTGTATTCC AGATCGACCTCAGCGGCAGCATGACGGAGGTCCGCCGTTGGAGAACGGGG CTTGGTGCTTTTCCAGGAGAGCACATCACTCACGGCGGAGCCGATGAATA CTCCCTGGGAGTCAAGCGGCCAAGATTCCTATCGCTCCACGGTGGGAATC TCTACGTCGCCCCCTTCCTCTCCGGGAACAACACGCTGACGTTCATGGAG GGAGATAGCCCCTCAGGGTCAGGGCACAAGGGCACTGATATCATCAATGG TCACGCAAGTCAGGACTCCTTCGGAGGAGCCTTGGCCATAACGGGGTTGA GGAATGACGGCATGCCAGACGCTGACCTCATCTGTATCGACCTTGACCAG CCGGCTTCAACACAGATCAGCACCGTCATCCGAAGGGCAGGCAGCATGTT GACCGCACATGGCTTCCATCCCACAAGCGACGAGGTTTGGATGCTGGGCA TGTACAGCAAGAACTTGGACGAAAACACCGAGCCCGATTTCAAGGGGGAC TTCGCGCGAAATACCCTAGTCGTGCGGCCGCTTGCGAGCGGGGCGCCGCC CGTCACGATCGACCCGAGCTCTGGAACGATTGACCTTGATCAGCCGGGCT ACTCAGAGAGCAAGTCCCTGCCCTTGCCGTACGCCCTTGAGTTCGGGGGC CCGAATGGGCTAACGGCGATCGCCAGCTCTACCCTCTCTCGGATTTCACT GAGGGACTCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101018:3..962-

>mRNA_P-canaliculata_contig101018.189.1 ID=mRNA_P-canaliculata_contig101018.189.1|Name=mRNA_P-canaliculata_contig101018.189.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at P-canaliculata_contig101018:3..962- (Pelvetia canaliculata dioecious)
CCCAACAAGGTCTGGCCGACTGTCACGGACCCCGTGGCGATCAGCTTCTA
CGGAGGGCACATCTACGTCTTAGGGCAAGGAACGCACGCTCTAGCCAAGC
AAGACGCCGCCGACGGGCGCATTGTGCAGGTCTTTGCACCGGGGGCCACG
AACTACCTCAAAGGTGCCTTTTCTGAGCCCGCTGATCTTGTGATCGATAG
CAGCTCCGGTCAGGCTTTCGTGTCGTGCATGGGCTCTGACTCTGTATTCC
AGATCGACCTCAGCGGCAGCATGACGGAGGTCCGCCGTTGGAGAACGGGG
CTTGGTGCTTTTCCAGGAGAGCACATCACTCACGGCGGAGCCGATGAATA
CTCCCTGGGAGTCAAGCGGCCAAGATTCCTATCGCTCCACGGTGGGAATC
TCTACGTCGCCCCCTTCCTCTCCGGGAACAACACGCTGACGTTCATGGAG
GGAGATAGCCCCTCAGGGTCAGGGCACAAGGGCACTGATATCATCAATGG
TCACGCAAGTCAGGACTCCTTCGGAGGAGCCTTGGCCATAACGGGGTTGA
GGAATGACGGCATGCCAGACGCTGACCTCATCTGTATCGACCTTGACCAG
CCGGCTTCAACACAGATCAGCACCGTCATCCGAAGGGCAGGCAGCATGTT
GACCGCACATGGCTTCCATCCCACAAGCGACGAGGTTTGGATGCTGGGCA
TGTACAGCAAGAACTTGGACGAAAACACCGAGCCCGATTTCAAGGGGGAC
TTCGCGCGAAATACCCTAGTCGTGCGGCCGCTTGCGAGCGGGGCGCCGCC
CGTCACGATCGACCCGAGCTCTGGAACGATTGACCTTGATCAGCCGGGCT
ACTCAGAGAGCAAGTCCCTGCCCTTGCCGTACGCCCTTGAGTTCGGGGGC
CCGAATGGGCTAACGGCGATCGCCAGCTCTACCCTCTCTCGGATTTCACT
GAGGGACTCTCCCAACAAGGTCTGGCCGACTGTCACGGACCCCGTGGCGA
TCAGCTTCTACGGAGGGCACATCTACGTCTTAGGGCAAGGAACGCACGCT
CTAGCCAAGCAAGACGCCGCCGACGGGCGCATTGTGCAGGTCTTTGCACC
GGGGGCCACGAACTACCTCAAAGGTGCCTTTTCTGAGCCCGCTGATCTTG
TGATCGATAGCAGCTCCGGTCAGGCTTTCGTGTCGTGCATGGGCTCTGAC
TCTGTATTCCAGATCGACCTCAGCGGCAGCATGACGGAGGTCCGCCGTTG
GAGAACGGGGCTTGGTGCTTTTCCAGGAGAGCACATCACTCACGGCGGAG
CCGATGAATACTCCCTGGGAGTCAAGCGGCCAAGATTCCTATCGCTCCAC
GGTGGGAATCTCTACGTCGCCCCCTTCCTCTCCGGGAACAACACGCTGAC
GTTCATGGAGGGAGATAGCCCCTCAGGGTCAGGGCACAAGGGCACTGATA
TCATCAATGGTCACGCAAGTCAGGACTCCTTCGGAGGAGCCTTGGCCATA
ACGGGGTTGAGGAATGACGGCATGCCAGACGCTGACCTCATCTGTATCGA
CCTTGACCAGCCGGCTTCAACACAGATCAGCACCGTCATCCGAAGGGCAG
GCAGCATGTTGACCGCACATGGCTTCCATCCCACAAGCGACGAGGTTTGG
ATGCTGGGCATGTACAGCAAGAACTTGGACGAAAACACCGAGCCCGATTT
CAAGGGGGACTTCGCGCGAAATACCCTAGTCGTGCGGCCGCTTGCGAGCG
GGGCGCCGCCCGTCACGATCGACCCGAGCTCTGGAACGATTGACCTTGAT
CAGCCGGGCTACTCAGAGAGCAAGTCCCTGCCCTTGCCGTACGCCCTTGA
GTTCGGGGGCCCGAATGGGCTAACGGCGATCGCCAGCTCTACCCTCTCTC
GGATTTCACTGAGGGACTCT
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