mRNA_P-canaliculata_contig100976.186.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100976.186.1
Unique NamemRNA_P-canaliculata_contig100976.186.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A518EW90_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EW90_9BACT)

HSP 1 Score: 311 bits (796), Expect = 7.300e-94
Identity = 171/344 (49.71%), Postives = 226/344 (65.70%), Query Frame = 1
Query:    1 LRVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFENGGISFSFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTS-------FDADMNPLTSERVQIGQDVNNPVDQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTDPLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETFDTTVF-----EDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPIPGMLSEIDVIGN 996
            L+V+D  +GT P+GLRFVDP+NP RVIFRP+++FE G ++FSF  NR+YE+LIPG  Q  +GP+IRSI G PN SRL C+V+T++G++D VPG+P V V  D +T         D + NP+ + R Q+G D    V+ I+  S V+F FNELM LPT+A+N    +PFIAV  D DG+LAT+G D+  + G +   VDQ  LTT LVF P G  P+A  D   P L+ VRIP SV D    PVTTATGGG L  + E I F  + +P + GE+FD +       E  N TG LW  GVL+PG++GG+GR G LRI  G+T+ LNT+SQ FPI   +  ++VIGN
Sbjct:  119 LQVIDVDNGTTPDGLRFVDPLNPNRVIFRPTVSFETG-VNFSFLRNRSYEILIPGVAQGDAGPYIRSIVGRPNQSRLLCTVDTSQGVSDTVPGDPSVEVFVDTLTLDTSGNPILDGNGNPVLT-RKQLGADFATKVENIALNSNVYFEFNELMNLPTVANNQFMTSPFIAVELDGDGNLATAGSDRSRIEGNYTVTVDQELLTTSLVFVPSGGFPAASVDDPMPALITVRIPASVVDIVQRPVTTATGGGTLVGVAERIEFESVFIPSEAGESFDLSAGTLGSQEAENITGALWGGGVLSPGVTGGTGRHGSLRIATGQTVILNTDSQVFPIDDFVG-LNVIGN 459          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A800G0T1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G0T1_9BACT)

HSP 1 Score: 238 bits (608), Expect = 1.760e-67
Identity = 142/351 (40.46%), Postives = 206/351 (58.69%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFENGGISF-SFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQI--GQDVNNPVDQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTDPLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETF-----DTTVFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPIP-----GMLSEIDVIGNGSGPNYP 1017
            RV D ++GT P G  F DP +PRR+IFRPS+ F+  G     F ++ +Y +L+PG  Q   GPFI+S  G  N SR++C+++TTEG+ D VPG+P  ++  D+V  +  D +P+    V +  G ++ N    + R ++V F FN++M + TL +  +G +P IAV  D DG LAT  LD+  + G F + VD   L+T L F     +PSAG+D L+P  +V+ +P +V D   NP+++  GGGV + I E     E+ +P DGGE F     D    ED   +G LW  G L PG+ GGSGRLG+LR+ +G+ LTLNT+SQ FP+      G     D +GN    N+P
Sbjct:   85 RVTDVSNGTTPSGQFFSDPTDPRRLIFRPSLTFDQNGTPIHGFASSTSYRILLPGVAQMDQGPFIQSTLGAENKSRMQCTIKTTEGVIDPVPGSPSASMYVDQVVGYQDDGSPIIVSDVLLNGGTELTN----VYRQTQVRFEFNDIMNVATLLNPSSGDSPNIAVELDEDGDLAT--LDRTPIDGNFTYLVDLEQLSTSLYFLANVPLPSAGSDDLSPRRIVLTLPPAVQDLVANPISS--GGGVHSFITEPPQLGEVLVP-DGGEDFQLSSPDPDSNEDGPRSGALWGGGRLTPGVGGGSGRLGDLRVPSGKALTLNTDSQAFPLGIADGLGFDHNPDFLGNSDAVNFP 426          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A2D5XPF8_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XPF8_9BACT)

HSP 1 Score: 235 bits (599), Expect = 5.470e-66
Identity = 153/355 (43.10%), Postives = 203/355 (57.18%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFE-NGGISFSFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQIGQDVNNPVDQISRFS--RVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLAT-----------SGLDQFDLPG-----TFEFFVDQITLTTELVFTPEGTIPSAGTDPLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETF-----DTTVFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPIPGMLSEIDVIGN 996
            RVVD ++GT P+G    DP +PRR+IFRPS++F+ NG  SF+   +RTY+V I G  Q+   P+IRSI G PN +RL CSV T+EGI D VPG+P   + AD  T  D + +P+        Q VN P D +  +S  R+   FN++M L ++ +  TG APFI V  D+DG  +T           S L   D PG      F+ FVD   L T +VF P+  +PS+G   L P L+ V IP +V D  GN VT   GGG+ +  PEF+ F EL +P  GGE F     D    ED   + G+W  G L+ G  GGSGRLGEL I  GET+ LN++ Q FP+ G    +D+IGN
Sbjct:   90 RVVDASTGTTPQGTFTTDPTDPRRLIFRPSLSFDINGNPSFALLPDRTYQVTISGVLQNDPPPYIRSISGRPNQNRLLCSVITSEGIVDPVPGSPSAAIYADVKTGVDPNGDPILLRN----QLVNGPEDLVDVWSGSRIRVRFNDIMNLASVVNPQTGSAPFIRVEVDQDGDTSTADRTIIGGSYGSPLPTLD-PGFTSDPLFQAFVDIANLETYVVFQPDLDLPSSGIGAL-PRLVTVSIPAAVVDLVGNGVTLENGGGLHSFTPEFVEFGELVIPQVGGEDFLIAGPDEDSNEDYRRSSGVWGGGQLSRGSGGGSGRLGELLIEQGETIELNSDYQVFPLVGR--PMDLIGN 436          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A2D6QAI5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6QAI5_9ARCH)

HSP 1 Score: 220 bits (561), Expect = 5.770e-63
Identity = 134/352 (38.07%), Postives = 196/352 (55.68%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFENGGISF-SFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQI--GQDVNNPVDQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTDP-LNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETF-----DTTVFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPIP-----GMLSEIDVIGNGSGPNYP 1017
            R+ D A+GT P G  + DP +P R+IFRPS+ F+  G       ++ +Y + +PG  Q+  GPFI+S  G  N SR++C+++TTEG+ D VPG P V +  D+V  +  D  P+    V +  G ++ N    + R +RV F+FN++M + TL +  TG +P I +  D DG L T   D+  + G+  + VD   L+T L F  +  +PSAG D  LNP  +V+ +P +V D   NP+++  GGG  + I E     E+ +P DGGE F     D    ED   +G  W  G L PGI GGSGRLG+LR+ +G  + LNT+SQ FP+      G     D +GN    N+P
Sbjct:   85 RITDVANGTTPSGQFYSDPTDPHRLIFRPSLTFDQNGTPIHGLASSTSYRIFLPGLAQNDQGPFIQSTQGVDNKSRMQCTIKTTEGVIDPVPGPPSVLMFVDQVVDYQPDGTPIIVSDVLVNGGSELTN----VYRQTRVSFAFNDIMNVATLLNPSTGDSPNILIELDDDGDLLTE--DRTPIEGSLTYAVDLEQLSTSLYFVSDVPLPSAGPDAALNPRRIVLTLPPAVQDLVANPISS--GGGSHSFITELPQLGEVFVP-DGGEDFLLSWPDPDSHEDGPRSGAFWGGGRLAPGIGGGSGRLGDLRVPSGMKVVLNTDSQTFPLGTADGLGFDLNPDYLGNADAVNFP 427          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A2E6D6Y3_9BACT (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A2E6D6Y3_9BACT)

HSP 1 Score: 222 bits (565), Expect = 1.530e-61
Identity = 145/354 (40.96%), Postives = 206/354 (58.19%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFE-NGGISFSFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQIGQDV---NNPV-DQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTD-PLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETFDTT-----VFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPIPG----MLSEI-DVIGNGSGPNYP 1017
            +VV+ A+GT+P G  F DP N RR+IFRP+++F+ NG   F  + N +Y + IPG  QD  GPFI+S  G  N +R+ C+V T+ G+ D VPG+P V  + D VT +D++ N       Q   DV   N PV + + R +R+ F F+++M + TL D  + +AP+I +  D DG LAT  LD++D+ G F F VD   L T L F     +PSAG + P +P  +V+ IP++V D   N V  A GGG  + IPE     E  LP  GGE F  +       ED N  G  W  G L PGI GGSGRLG+L + AG +LTL+T++Q FP+      +L+++ D++GN     +P
Sbjct:  101 QVVNVANGTSPPGQFFGDPTNLRRLIFRPALSFDQNGNPIFGLEANTSYSIRIPGEVQDGFGPFIQSTTGQVNQARMECTVRTSLGVIDPVPGSPDVVTTVDVVTGYDSEGNAN-----QFDYDVVVTNTPVIEDVWRQTRITFFFDDVMNIATLLDPASKKAPYITIEVDDDGDLAT--LDRYDVDGAFSFGVDFDRLETYLYFDATLPMPSAGPNAPASPRRVVIIIPSTVQDLVSNSV--AAGGGQRSFIPEPSTLQESLLP-PGGEDFTVSWPAADSNEDGNRGGAFWGGGQLIPGIGGGSGRLGDLFVPAGLSLTLSTDNQTFPLTTDDGFLLNQVADILGNPDPSGFP 444          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A800G0H1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G0H1_9BACT)

HSP 1 Score: 220 bits (561), Expect = 5.390e-61
Identity = 147/354 (41.53%), Postives = 204/354 (57.63%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFE-NGGISFSFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQIGQDV---NNPV-DQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTD-PLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETFDTT-----VFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPIPG----MLSEI-DVIGNGSGPNYP 1017
            +VV+ A+GT+P G  F DP N  R+IFRP+++F+ NG   F  + N +Y + IPG  QD  GPFI+S  G  N +R+ C++ T+ GI D VPGNP V  + D VT +D++ N       Q   DV   + PV D + R +R+ F F+++M + TL D  + +AP+I +  D DG LAT  LD++D+ G F F VD   L T L F     +PSAG + P++   +V+ IP++V D   N V  A GGG  + IPE     E  LP  GGE F          ED N  G  W  G L PGI GGSGRLG+L + AG +LTLNT+SQ FP+      +L+++ DV+GN     +P
Sbjct:  101 QVVNVANGTSPPGQFFGDPTNLHRLIFRPALSFDQNGNPIFGLEANTSYAIRIPGQVQDNFGPFIQSTTGQVNQARMECTIRTSLGIIDPVPGNPDVVTTVDVVTGYDSNGNAN-----QFDYDVVVTSTPVIDDVWRQTRITFFFDDVMNVATLLDPSSKKAPYITIEVDDDGDLAT--LDRYDVAGDFSFGVDFDRLETFLYFDALLPLPSAGPNAPISSRRVVIIIPSTVQDLVSNSV--AAGGGQRSFIPEPSTLQESLLP-PGGEDFTVAWPAAGSNEDGNRGGAFWGGGKLIPGIGGGSGRLGDLFVPAGLSLTLNTDSQTFPLTTGDGFLLNQVADVLGNPDPSGFP 444          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A2E6D6F0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6D6F0_9BACT)

HSP 1 Score: 219 bits (558), Expect = 1.350e-60
Identity = 133/352 (37.78%), Postives = 201/352 (57.10%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFENGGISF-SFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQI--GQDVNNPVDQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTDPL-NPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETF-----DTTVFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPI---PGMLSEI--DVIGNGSGPNYP 1017
            R+ + A+GT P G  + DP +  R+IFRPS+ F+  G       ++ +Y + +PG +Q+  GPFI+S  G  N SR++C+++TTEG+ D VPG P V +  D+V  + +D  P+    V +  G ++ N    + R +RV F+FN++M + TL +  TG +P I +  D DG L T   D+  + G+F + VD   L+T L F  +  +PSAG D   NP  +V+ +P +V D   NP+++  GGG  + I E     E+ +P DGGE F     D+   ED   +G  W  G L PGI GGSGRLG+LR+ +G  L LNT+SQ FP+    G+  ++  D +GN    N+P
Sbjct:   85 RITEVANGTTPSGQFYSDPTDSHRLIFRPSLTFDQNGTPIHGLASSTSYRIFLPGVSQNDQGPFIQSTQGVDNKSRMQCTIKTTEGVIDPVPGPPSVLMFVDQVVDYQSDGTPIIVSDVLVNGGSELTN----VYRQTRVNFAFNDIMNVATLLNPSTGDSPNILIELDDDGDLLTE--DKTPIEGSFTYAVDLEQLSTSLYFVSDVPLPSAGPDAASNPRRIVLTLPPAVQDLVANPISS--GGGSHSFITELPQLGEVLVP-DGGEDFLLSWPDSNSNEDGPRSGAFWGGGRLAPGIGGGSGRLGDLRVPSGMKLVLNTDSQTFPLGTSDGLGFDLIPDYLGNADAVNFP 427          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A7Y5UU82_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5UU82_9PLAN)

HSP 1 Score: 211 bits (538), Expect = 6.590e-59
Identity = 134/317 (42.27%), Postives = 187/317 (58.99%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFENGGI-SFSFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQIGQDVNNPVDQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTDPLNPNL-LVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETFDTTVFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQ 948
            +V+D  +G  P G R VDP N RR IFRP ++F++ G  S+ F +N+TY++ IPG+ Q  +GPFI S +G  N+SR+ C++ T++G+ D VPG P V++   R   F    NP+  + V   +DV          S V F FN+LM + TL    TG +PFI+++ D DG+L+T G DQ  + GT++F ++Q TLTT LVFTP G  PSAGT   NP   +VV +P++V D +GN V  A   G    +PE ++F  ++LP  GGE F      D   TG  W  G L  GI GGSGRLG+L I   +  T  T +Q
Sbjct:   84 QVIDIVTGGVPPGTRLVDPSNSRRAIFRPKLSFDSAGNPSYGFGSNQTYQIRIPGTKQSDTGPFIESQEGQFNTSRMLCTITTSQGLIDPVPGAPSVSIFV-RALGFP---NPVNLDSVANLEDVLTN-------STVTFVFNDLMNVGTLVQPSTGLSPFISIKVDPDGNLSTPG-DQVPVGGTYQFSINQSTLTTSLVFTPFGGFPSAGTG--NPKRKIVVDVPSNVKDLSGNSVLNA---GRRTFVPEVVVFNPVSLPT-GGEQFTNQNNTDTLRTGADWGGGRLVAGIGGGSGRLGDLVISDNQIRTFYTSTQ 382          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A521JV09_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521JV09_9BACT)

HSP 1 Score: 201 bits (511), Expect = 3.040e-54
Identity = 125/316 (39.56%), Postives = 183/316 (57.91%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFENGGIS-FSFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQIGQDVNNPVDQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTDPLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETFDTTVFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQ 948
            +VV+ A+G  P G   +DP NP+R+IFRP + F++ G   F      +Y++ IPGS Q+     I+S  G  NSSR+ C+V  ++GI D VPG P VT + D+VTS+D   NP   +  +     +  VD + R + +  +F+++M   TL +  TG +P I+V  D DG + T   DQ +L G ++  +DQ +L T + FTP G +PSAGT  L P  +VV+ P ++ D   N +      G ++ +PE IIF E  +P   GE F     ED   +G LW +G L PG  GGSGRLG+L + +G+TLTL+T SQ
Sbjct:   92 KVVNLATGKTPIGSYSLDPGNPKRLIFRPQVTFDSSGNPIFGLDQGASYQIDIPGSVQNPGVAHIKSTVGLDNSSRMFCTVVASKGINDAVPGKPSVTTTVDKVTSYDLSGNP---DGFEFDVLADGAVD-VFRDTLITLTFDDVMNPATLVNPVTGLSPTISVLVDPDGDV-TDSTDQTELSGVYQINIDQGSLQTIVKFTPSGGLPSAGTGVL-PRRIVVKTPATILDLGSNSLENF---GSISFVPELIIFGETLIPDGTGEQFTQNNNEDTARSGALWGSGGLRPGTGGGSGRLGDLVVTSGDTLTLSTTSQ 398          
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Match: A0A2D6HDD9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HDD9_9BACT)

HSP 1 Score: 194 bits (493), Expect = 8.900e-52
Identity = 119/332 (35.84%), Postives = 181/332 (54.52%), Query Frame = 1
Query:    4 RVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFEN-GGISFSFQTNRTYEVLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVSADRVTSFDADMNPLTSERVQIGQDVNNPVDQISRFSRVFFSFNELMFLPTLADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELVFTPEGTIPSAGTDPLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPEFIIFPELTLPIDGGETFDTTVFEDPNATGGLWENGVLNPGISGGSGRLGELRILAGETLTLNTESQEFPIPGMLSEIDVIGN 996
            R+++T +G+ P G   +DP + RR+IFRP++ F+  G   F+   + TYEVL+PG NQ  +GP+++S  G  N+SRL+C++ TTEG+ D VPG+P  T   +   +  A +         +   V +P     +   V   F+++M   TL +  TGQ+  I V+ D DG+      DQ D  G+F   VD  +L T LVF P G  PSAG DPL P  +++ +PT + D  GN +      G +    + I F  + +P   GE F      D   +G  W +G L  G  GGSGR GEL I +G ++T+ T +++FPIPG++   D++ N
Sbjct:   87 RIINTTNGSVPVGTYSLDPDDARRLIFRPALTFDEVGNPLFALDEDETYEVLLPGENQGDTGPYVQSAGGRRNTSRLQCTIRTTEGLLDPVPGSPTHTARIEVRDASGAAIEVFDPADGAVDVPVFDPALDPEQTVMVV-EFDDIMNPATLTNLSTGQSSTITVKIDPDGNTVDPS-DQVDQAGSFTVEVDFESLRTTLVFVPLGGFPSAGDDPLTPRRIIMNLPTGLLDLVGNELANP---GEIVFSTQVIAFDPMIMPDADGENFTDDSNHDVPRSGADWGSGRLTYGAGGGSGRHGELVIPSGLSVTIRTGNEDFPIPGLMVR-DLLDN 412          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100976.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A518EW90_9BACT7.300e-9449.71Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A800G0T1_9BACT1.760e-6740.46Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5XPF8_9BACT5.470e-6643.10Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A2D6QAI5_9ARCH5.770e-6338.07Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A2E6D6Y3_9BACT1.530e-6140.96Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A800G0H1_9BACT5.390e-6141.53Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E6D6F0_9BACT1.350e-6037.78Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5UU82_9PLAN6.590e-5942.27Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A521JV09_9BACT3.040e-5439.56Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D6HDD9_9BACT8.900e-5235.84Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100976contigP-canaliculata_contig100976:2..1018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1017
Cds size1017
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.8255641-CDS-P-canaliculata_contig100976:1..10181622815583.8255641-CDS-P-canaliculata_contig100976:1..1018Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100976 2..1018 +
1693494150.5849895-CDS-P-canaliculata_contig100976:1..10181693494150.5849895-CDS-P-canaliculata_contig100976:1..1018Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100976 2..1018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100976.186.1prot_P-canaliculata_contig100976.186.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100976 2..1018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100976.186.1

>prot_P-canaliculata_contig100976.186.1 ID=prot_P-canaliculata_contig100976.186.1|Name=mRNA_P-canaliculata_contig100976.186.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=339bp
LRVVDTASGTAPEGLRFVDPVNPRRVIFRPSIAFENGGISFSFQTNRTYE
VLIPGSNQDVSGPFIRSIDGNPNSSRLRCSVETTEGIADIVPGNPVVTVS
ADRVTSFDADMNPLTSERVQIGQDVNNPVDQISRFSRVFFSFNELMFLPT
LADNGTGQAPFIAVRFDRDGSLATSGLDQFDLPGTFEFFVDQITLTTELV
FTPEGTIPSAGTDPLNPNLLVVRIPTSVTDAAGNPVTTATGGGVLAAIPE
FIIFPELTLPIDGGETFDTTVFEDPNATGGLWENGVLNPGISGGSGRLGE
LRILAGETLTLNTESQEFPIPGMLSEIDVIGNGSGPNYP
back to top

mRNA from alignment at P-canaliculata_contig100976:2..1018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100976.186.1 ID=mRNA_P-canaliculata_contig100976.186.1|Name=mRNA_P-canaliculata_contig100976.186.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1017bp|location=Sequence derived from alignment at P-canaliculata_contig100976:2..1018+ (Pelvetia canaliculata dioecious)
CTTCGGGTCGTCGATACAGCGAGCGGAACCGCGCCAGAGGGCCTGCGTTT CGTCGATCCGGTCAATCCACGGCGGGTCATTTTCCGCCCTTCGATCGCCT TCGAGAACGGCGGCATCTCGTTCTCGTTCCAGACGAACCGGACCTACGAG GTCCTGATCCCGGGCTCTAACCAAGATGTTTCGGGGCCGTTCATACGTAG CATCGACGGCAATCCGAACAGCAGCCGGCTGCGCTGCTCGGTCGAGACCA CCGAGGGCATCGCCGACATCGTTCCGGGCAATCCGGTCGTGACCGTCAGC GCGGACCGCGTCACGAGCTTCGACGCGGACATGAACCCGCTCACTAGCGA GCGTGTGCAGATCGGCCAGGACGTGAACAATCCTGTCGATCAGATCTCGC GCTTCTCGCGGGTCTTCTTCTCGTTCAACGAGCTGATGTTCCTCCCAACC TTGGCGGACAACGGCACGGGACAGGCGCCCTTCATCGCGGTGCGCTTCGA CCGAGACGGGAGCCTGGCCACCTCTGGCTTGGACCAGTTCGATCTCCCGG GCACCTTCGAGTTCTTCGTGGATCAGATCACGCTGACCACTGAGCTCGTG TTTACGCCGGAGGGCACAATCCCATCAGCTGGCACCGACCCGTTGAATCC GAACCTGCTGGTCGTCCGTATCCCCACCTCAGTGACCGACGCGGCGGGCA ACCCCGTGACGACTGCCACCGGAGGCGGCGTGCTTGCCGCGATCCCCGAG TTCATTATTTTCCCAGAGCTGACGCTTCCGATCGACGGCGGCGAAACCTT CGATACCACGGTATTCGAGGACCCGAACGCCACCGGTGGCCTCTGGGAGA ACGGTGTCTTGAACCCGGGCATCTCCGGCGGTTCGGGCCGCTTGGGCGAG CTCCGCATCCTCGCTGGCGAGACCCTCACGCTCAACACGGAGAGCCAGGA ATTCCCGATTCCCGGGATGCTCAGTGAGATCGACGTGATCGGCAATGGCT CGGGTCCGAATTACCCA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig100976:2..1018+

>mRNA_P-canaliculata_contig100976.186.1 ID=mRNA_P-canaliculata_contig100976.186.1|Name=mRNA_P-canaliculata_contig100976.186.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2034bp|location=Sequence derived from alignment at P-canaliculata_contig100976:2..1018+ (Pelvetia canaliculata dioecious)
CTTCGGGTCGTCGATACAGCGAGCGGAACCGCGCCAGAGGGCCTGCGTTT
CGTCGATCCGGTCAATCCACGGCGGGTCATTTTCCGCCCTTCGATCGCCT
TCGAGAACGGCGGCATCTCGTTCTCGTTCCAGACGAACCGGACCTACGAG
GTCCTGATCCCGGGCTCTAACCAAGATGTTTCGGGGCCGTTCATACGTAG
CATCGACGGCAATCCGAACAGCAGCCGGCTGCGCTGCTCGGTCGAGACCA
CCGAGGGCATCGCCGACATCGTTCCGGGCAATCCGGTCGTGACCGTCAGC
GCGGACCGCGTCACGAGCTTCGACGCGGACATGAACCCGCTCACTAGCGA
GCGTGTGCAGATCGGCCAGGACGTGAACAATCCTGTCGATCAGATCTCGC
GCTTCTCGCGGGTCTTCTTCTCGTTCAACGAGCTGATGTTCCTCCCAACC
TTGGCGGACAACGGCACGGGACAGGCGCCCTTCATCGCGGTGCGCTTCGA
CCGAGACGGGAGCCTGGCCACCTCTGGCTTGGACCAGTTCGATCTCCCGG
GCACCTTCGAGTTCTTCGTGGATCAGATCACGCTGACCACTGAGCTCGTG
TTTACGCCGGAGGGCACAATCCCATCAGCTGGCACCGACCCGTTGAATCC
GAACCTGCTGGTCGTCCGTATCCCCACCTCAGTGACCGACGCGGCGGGCA
ACCCCGTGACGACTGCCACCGGAGGCGGCGTGCTTGCCGCGATCCCCGAG
TTCATTATTTTCCCAGAGCTGACGCTTCCGATCGACGGCGGCGAAACCTT
CGATACCACGGTATTCGAGGACCCGAACGCCACCGGTGGCCTCTGGGAGA
ACGGTGTCTTGAACCCGGGCATCTCCGGCGGTTCGGGCCGCTTGGGCGAG
CTCCGCATCCTCGCTGGCGAGACCCTCACGCTCAACACGGAGAGCCAGGA
ATTCCCGATTCCCGGGATGCTCAGTGAGATCGACGTGATCGGCAATGGCT
CGGGTCCGAATTACCCACTTCGGGTCGTCGATACAGCGAGCGGAACCGCG
CCAGAGGGCCTGCGTTTCGTCGATCCGGTCAATCCACGGCGGGTCATTTT
CCGCCCTTCGATCGCCTTCGAGAACGGCGGCATCTCGTTCTCGTTCCAGA
CGAACCGGACCTACGAGGTCCTGATCCCGGGCTCTAACCAAGATGTTTCG
GGGCCGTTCATACGTAGCATCGACGGCAATCCGAACAGCAGCCGGCTGCG
CTGCTCGGTCGAGACCACCGAGGGCATCGCCGACATCGTTCCGGGCAATC
CGGTCGTGACCGTCAGCGCGGACCGCGTCACGAGCTTCGACGCGGACATG
AACCCGCTCACTAGCGAGCGTGTGCAGATCGGCCAGGACGTGAACAATCC
TGTCGATCAGATCTCGCGCTTCTCGCGGGTCTTCTTCTCGTTCAACGAGC
TGATGTTCCTCCCAACCTTGGCGGACAACGGCACGGGACAGGCGCCCTTC
ATCGCGGTGCGCTTCGACCGAGACGGGAGCCTGGCCACCTCTGGCTTGGA
CCAGTTCGATCTCCCGGGCACCTTCGAGTTCTTCGTGGATCAGATCACGC
TGACCACTGAGCTCGTGTTTACGCCGGAGGGCACAATCCCATCAGCTGGC
ACCGACCCGTTGAATCCGAACCTGCTGGTCGTCCGTATCCCCACCTCAGT
GACCGACGCGGCGGGCAACCCCGTGACGACTGCCACCGGAGGCGGCGTGC
TTGCCGCGATCCCCGAGTTCATTATTTTCCCAGAGCTGACGCTTCCGATC
GACGGCGGCGAAACCTTCGATACCACGGTATTCGAGGACCCGAACGCCAC
CGGTGGCCTCTGGGAGAACGGTGTCTTGAACCCGGGCATCTCCGGCGGTT
CGGGCCGCTTGGGCGAGCTCCGCATCCTCGCTGGCGAGACCCTCACGCTC
AACACGGAGAGCCAGGAATTCCCGATTCCCGGGATGCTCAGTGAGATCGA
CGTGATCGGCAATGGCTCGGGTCCGAATTACCCA
back to top