mRNA_P-canaliculata_contig100974.185.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100974.185.1
Unique NamemRNA_P-canaliculata_contig100974.185.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: UPI00199F6E26 (GAF domain-containing protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI00199F6E26)

HSP 1 Score: 173 bits (438), Expect = 1.680e-49
Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 1
Query:    4 AGLTSLINYVELWTPRAD--SLVLESAVSLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQ-GPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPD--KDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDILRCETVEADS 681
            A   +L+ Y+E+W    D  ++ L+S   L  +      T DR    G+GIAG AW Q  AVI+Q  PS  L  +    G ++ ALIA P+     +L+V+V G+++G    EIW+RDDRDELS+S SYY GL + EF+SRYVRFPKGAGLPG+ WKTG PK+  APD      F+RSFD D        G+P+    G   SILLLLS    P+A+  +I     V  +S
Sbjct:   10 ANQGTLVQYIEVWHVEEDGQTMRLQSHARLRENVV-DFGTSDRQIRSGEGIAGMAWNQRHAVILQEAPSELLQRIGTQNGLNLTALIAYPIMRGHDVLSVVVFGISDGPGAFEIWSRDDRDELSISASYYSGLKNLEFMSRYVRFPKGAGLPGTVWKTGMPKL--APDLAHSASFMRSFDADETPLSTGFGLPVGSTAGHSESILLLLSSSTMPIARAFEIWTPHVVTEES 237          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A2E0X6Z4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0X6Z4_9PLAN)

HSP 1 Score: 108 bits (270), Expect = 1.670e-24
Identity = 77/230 (33.48%), Postives = 112/230 (48.70%), Query Frame = 1
Query:   10 LTSLINYVELWTP--RADSLVLESAVSLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQGPSA-YLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLA---EGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDILRCETVEADS 681
            L+ L+  VE+W P    D LV       E  + R+    D T   G+G+ G+AW+    V+M   SA       AA  T V A +A+P +    L  ++V       E     E+W+R+ R+EL +S SYY  L  F  IS+YV+FP+G+GLPG  W +  PK+I    +   F+R+           + IPI R      S++L+LS    PLA   +I   E  E+DS
Sbjct:   18 LSGLLRAVEVWRPSDEGDHLVWGGGAYGELDELRAASV-DETFACGEGLPGAAWETRSPVVMHQLSAGNFKRADAARATGVTAGVALPCFRGDELQGIVVFLCGDDPEAQGAFEVWSRNHREELGLSASYYANLERFGLISQYVKFPRGSGLPGETWVSRFPKLISRLGQSKGFMRAAGAAADGLSTALSIPIMRSSLDLDSVVLMLSSARAPLAHAFEIWAREQ-ESDS 245          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A518DG95_9BACT (Uncharacterized protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DG95_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 2.090e-17
Identity = 57/177 (32.20%), Postives = 85/177 (48.02%), Query Frame = 1
Query:  139 GQGIAGSAWQQEGAVIM---QGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGN---AGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651
            G+G+ G AW+    V+M   Q       E+    G S  + IA+P      +  V+      G       E+W R+ RDEL++SGSYY  L  F  IS+YV+FPK AGLPG  W    PK++       +F+R+        +  +G+PI        S++ LLS    P+A  I++
Sbjct:   53 GEGLPGMAWRDRSPVVMHDLQAGEFLRAELAERVGLS--SGIAVPCLHRQQVAGVVTFLCDHGQDAEGAFEVWRRNQRDELALSGSYYANLDRFGLISQYVKFPKRAGLPGKVWSEQSPKLVGNLGSSKEFMRAAGARAEGLNAALGLPIFSSPLEIDSVVCLLSSARSPIASVIEV 227          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A6P1T6H3_9RHOB (GAF domain-containing protein n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1T6H3_9RHOB)

HSP 1 Score: 87.4 bits (215), Expect = 8.450e-17
Identity = 62/219 (28.31%), Postives = 100/219 (45.66%), Query Frame = 1
Query:   16 SLINYVELWTPRADSLVLESAVSLESSQAR-SLPTGDRTTPKGQGIAGSAWQQEGAVIMQG-PSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGN---AGLEIWT--RDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651
            + I   E+W P      L+ A  L          +G      G+G+ G AW ++  ++++G   +Y     AA    + A IA+PV+    L  V+     + +     +E+W    D    L++   Y+     F +ISR+ RFPKG GLPG  W++GRPK+         F+RS     A     +G+P+S   G    I+ LLS +  P+A+  +I
Sbjct:   18 TFIRVTEVWVPDEADGRLKRAGGLYGDLTEFEAVSGKEIFALGEGLPGKAWAEQKPIVLKGFRGSYFKRTDAAEAAGLTAGIAMPVFAGSRLTAVVTFLFGDDSEHVGAVEVWAPGEDPSGPLALQDGYFGTADHFAWISRHTRFPKGMGLPGKTWESGRPKLFHDLGISHRFLRSDSAADAGMTAGLGLPVSAPSGD-THIVTLLSALGTPIARQFEI 235          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A5C5ZQF7_9BACT (GAF domain-containing protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZQF7_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.080e-14
Identity = 66/215 (30.70%), Postives = 99/215 (46.05%), Query Frame = 1
Query:   31 VELWTPRADSLVLESAV-SLESSQARSLPTGDRTTPKGQGIAGSAWQQEGAVIMQG---PSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGLAEGNAG----LEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651
            VE+W P      LE A  S    QA    +   T   G+G+ G AW     V++          D     AG +  + IAIP      L  V+V  L + N+      E+W R+DRDELS+   Y+  L  F  +S+YV+FP+GAGLPG   +   P++I       +F+R+           + +PI R      S++L+LS  + P+A   +I
Sbjct:   30 VEVWRPTESGDRLEWASGSYGPHQALQAESATITFAPGEGLPGMAWADRSPVLLDNLFQAGFVRDHTAREAGLT--SGIAIPCLSGERLHGVVVF-LCDHNSNAQGAFEVWRRNDRDELSLENGYHANLERFGKVSQYVKFPRGAGLPGKTREARFPQLIGNVGASKEFMRAAGAKAEGLASALSLPIMRGTLDIDSVVLMLSAAKTPIAHCFEI 241          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A517TKD0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TKD0_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.600e-13
Identity = 49/174 (28.16%), Postives = 83/174 (47.70%), Query Frame = 1
Query:  139 GQGIAGSAWQQEGAVIMQGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIVLGL--AEGNAG-LEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651
            G+G  G AW +   V   G   +               +AIP   E     VI L    +EG  G  E+W R++R EL +   +Y GL   E +SRY++FP+ AGLPG  W    P+++   +   +F+R       +    +G+P   +     ++LL+L+  E+P+A+ +++
Sbjct:   36 GEGAVGYAWAEGVPVFEHGDEGH-------------TTLAIPSLREQECRGVIALHCRESEGLCGAFEVWRRNERGELGIDKGWYPGLQRLEQVSRYIKFPRRAGLPGRVWDDRFPRVLGGLEDSKNFVRVAAARSERLGSALGVPFMGKPPELDAVLLMLNTRERPIARAMEV 196          
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Match: A0A5C6ADU0_9BACT (Uncharacterized protein n=2 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6ADU0_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 7.220e-11
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  331 EIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLPGSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASILLLLSDVEKPLAKHIDI 651
            E+W R++R EL ++ + Y GL   E I++YV+FP+ AGLPG  W    P+++ A      FIR       +    +GIP         ++LLLL+  + P+AK +++
Sbjct:   97 EVWRRNERGELGLAENLYAGLDRLEQITKYVKFPRRAGLPGRVWDDRFPRVLGALQDSKHFIRVAAARTEQLTSAVGIPFMGRPPELDAVLLLLNTKQTPIAKAMEV 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100974.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00199F6E261.680e-4943.72GAF domain-containing protein n=1 Tax=Fuerstiella ... [more]
A0A2E0X6Z4_9PLAN1.670e-2433.48Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A518DG95_9BACT2.090e-1732.20Uncharacterized protein n=1 Tax=Pirellulimonas nud... [more]
A0A6P1T6H3_9RHOB8.450e-1728.31GAF domain-containing protein n=1 Tax=Rhodobactera... [more]
A0A5C5ZQF7_9BACT1.080e-1430.70GAF domain-containing protein n=1 Tax=Pseudobythop... [more]
A0A517TKD0_9BACT1.600e-1328.16Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C6ADU0_9BACT7.220e-1133.64Uncharacterized protein n=2 Tax=Botrimarina collia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100974contigP-canaliculata_contig100974:12..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.4
Seed ortholog evalue9.1e-18
Seed eggNOG ortholog1116472.MGMO_85c00220
EggNOG free text desc.Gaf domain
EggNOG OGs1QWV5@1224,1THHY@1236,1XE4E@135618,COG2203@1,COG2203@2
COG Functional cat.T
Best tax levelMethylococcales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size699
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.7862-CDS-P-canaliculata_contig100974:11..7101622815583.7862-CDS-P-canaliculata_contig100974:11..710Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100974 12..710 +
1693494150.5610058-CDS-P-canaliculata_contig100974:11..7101693494150.5610058-CDS-P-canaliculata_contig100974:11..710Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100974 12..710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100974.185.1prot_P-canaliculata_contig100974.185.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100974 12..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100974.185.1

>prot_P-canaliculata_contig100974.185.1 ID=prot_P-canaliculata_contig100974.185.1|Name=mRNA_P-canaliculata_contig100974.185.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=233bp
RAGLTSLINYVELWTPRADSLVLESAVSLESSQARSLPTGDRTTPKGQGI
AGSAWQQEGAVIMQGPSAYLDEVVAAAGTSVKALIAIPVYCEFTLLNVIV
LGLAEGNAGLEIWTRDDRDELSVSGSYYDGLSSFEFISRYVRFPKGAGLP
GSCWKTGRPKMIDAPDKDPDFIRSFDRDPAKPDQCIGIPISREYGFPASI
LLLLSDVEKPLAKHIDILRCETVEADSALGPKL
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mRNA from alignment at P-canaliculata_contig100974:12..710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100974.185.1 ID=mRNA_P-canaliculata_contig100974.185.1|Name=mRNA_P-canaliculata_contig100974.185.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at P-canaliculata_contig100974:12..710+ (Pelvetia canaliculata dioecious)
CGAGCCGGTTTAACGTCGCTCATAAATTACGTTGAACTATGGACGCCACG CGCAGATTCGCTCGTACTTGAATCGGCGGTCTCTCTTGAGTCTTCGCAAG CTCGATCGCTCCCGACTGGAGATCGCACGACTCCGAAAGGACAAGGCATC GCCGGAAGTGCGTGGCAACAAGAAGGCGCTGTCATCATGCAGGGCCCCAG CGCCTATCTTGATGAAGTCGTCGCTGCCGCTGGGACTTCCGTCAAAGCCT TGATCGCAATTCCTGTTTACTGCGAGTTCACGCTGCTCAATGTGATTGTG CTTGGATTGGCCGAGGGAAACGCTGGATTAGAAATTTGGACTCGTGACGA CCGGGATGAACTTTCGGTCAGCGGTTCCTATTACGATGGCCTATCTTCGT TTGAATTCATCAGTCGCTATGTTCGGTTCCCCAAAGGCGCCGGGCTTCCC GGTTCCTGCTGGAAAACCGGGCGACCGAAAATGATCGATGCGCCGGATAA GGATCCTGATTTCATTCGATCCTTCGATCGCGATCCTGCCAAACCAGATC AGTGCATCGGCATCCCGATCAGCCGCGAGTACGGTTTTCCCGCTTCGATT TTGCTTTTGCTTTCAGATGTCGAAAAACCGCTTGCCAAGCACATCGACAT CTTAAGATGCGAAACCGTTGAAGCGGATAGCGCTCTCGGACCGAAGCTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100974:12..710+

>mRNA_P-canaliculata_contig100974.185.1 ID=mRNA_P-canaliculata_contig100974.185.1|Name=mRNA_P-canaliculata_contig100974.185.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at P-canaliculata_contig100974:12..710+ (Pelvetia canaliculata dioecious)
CGAGCCGGTTTAACGTCGCTCATAAATTACGTTGAACTATGGACGCCACG
CGCAGATTCGCTCGTACTTGAATCGGCGGTCTCTCTTGAGTCTTCGCAAG
CTCGATCGCTCCCGACTGGAGATCGCACGACTCCGAAAGGACAAGGCATC
GCCGGAAGTGCGTGGCAACAAGAAGGCGCTGTCATCATGCAGGGCCCCAG
CGCCTATCTTGATGAAGTCGTCGCTGCCGCTGGGACTTCCGTCAAAGCCT
TGATCGCAATTCCTGTTTACTGCGAGTTCACGCTGCTCAATGTGATTGTG
CTTGGATTGGCCGAGGGAAACGCTGGATTAGAAATTTGGACTCGTGACGA
CCGGGATGAACTTTCGGTCAGCGGTTCCTATTACGATGGCCTATCTTCGT
TTGAATTCATCAGTCGCTATGTTCGGTTCCCCAAAGGCGCCGGGCTTCCC
GGTTCCTGCTGGAAAACCGGGCGACCGAAAATGATCGATGCGCCGGATAA
GGATCCTGATTTCATTCGATCCTTCGATCGCGATCCTGCCAAACCAGATC
AGTGCATCGGCATCCCGATCAGCCGCGAGTACGGTTTTCCCGCTTCGATT
TTGCTTTTGCTTTCAGATGTCGAAAAACCGCTTGCCAAGCACATCGACAT
CTTAAGATGCGAAACCGTTGAAGCGGATAGCGCTCTCGGACCGAAGCTGC
GAGCCGGTTTAACGTCGCTCATAAATTACGTTGAACTATGGACGCCACGC
GCAGATTCGCTCGTACTTGAATCGGCGGTCTCTCTTGAGTCTTCGCAAGC
TCGATCGCTCCCGACTGGAGATCGCACGACTCCGAAAGGACAAGGCATCG
CCGGAAGTGCGTGGCAACAAGAAGGCGCTGTCATCATGCAGGGCCCCAGC
GCCTATCTTGATGAAGTCGTCGCTGCCGCTGGGACTTCCGTCAAAGCCTT
GATCGCAATTCCTGTTTACTGCGAGTTCACGCTGCTCAATGTGATTGTGC
TTGGATTGGCCGAGGGAAACGCTGGATTAGAAATTTGGACTCGTGACGAC
CGGGATGAACTTTCGGTCAGCGGTTCCTATTACGATGGCCTATCTTCGTT
TGAATTCATCAGTCGCTATGTTCGGTTCCCCAAAGGCGCCGGGCTTCCCG
GTTCCTGCTGGAAAACCGGGCGACCGAAAATGATCGATGCGCCGGATAAG
GATCCTGATTTCATTCGATCCTTCGATCGCGATCCTGCCAAACCAGATCA
GTGCATCGGCATCCCGATCAGCCGCGAGTACGGTTTTCCCGCTTCGATTT
TGCTTTTGCTTTCAGATGTCGAAAAACCGCTTGCCAAGCACATCGACATC
TTAAGATGCGAAACCGTTGAAGCGGATAGCGCTCTCGGACCGAAGCTG
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