mRNA_P-canaliculata_contig100933.178.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100933.178.1
Unique NamemRNA_P-canaliculata_contig100933.178.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100933.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100933contigP-canaliculata_contig100933:162..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size762
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.3115356-CDS-P-canaliculata_contig100933:161..9231622815583.3115356-CDS-P-canaliculata_contig100933:161..923Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100933 162..923 -
1693494150.3071308-CDS-P-canaliculata_contig100933:161..9231693494150.3071308-CDS-P-canaliculata_contig100933:161..923Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100933 162..923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.324331-UTR-P-canaliculata_contig100933:923..9291622815583.324331-UTR-P-canaliculata_contig100933:923..929Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100933 924..929 -
1693494150.3162565-UTR-P-canaliculata_contig100933:923..9291693494150.3162565-UTR-P-canaliculata_contig100933:923..929Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100933 924..929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100933.178.1prot_P-canaliculata_contig100933.178.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100933 162..923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100933.178.1

>prot_P-canaliculata_contig100933.178.1 ID=prot_P-canaliculata_contig100933.178.1|Name=mRNA_P-canaliculata_contig100933.178.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=254bp
MLELRCTRLKKIDALSNVNLSYLLLDGCKKLTSLNPLKNVASLKELDVRD
CYGFKKIDLSDWKQRNLKKITVSDCDGLVVLNGFSQCSKRCELLIDNCNA
LKEIQIQDDSSLDSITVNRCPNLDSINGLPQALSELRIYFCGALTKVSGG
KIPNLDSVEIGACSKLVSFDRYLENVKYFKLIQCHGIKQLSLRQPMPRLA
SVSVEYCDGLIAIDGLPESVNKLKVTGCEALKRVTPTAGLPNLSEANFID
CPNL
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mRNA from alignment at P-canaliculata_contig100933:162..929-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100933.178.1 ID=mRNA_P-canaliculata_contig100933.178.1|Name=mRNA_P-canaliculata_contig100933.178.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at P-canaliculata_contig100933:162..929- (Pelvetia canaliculata dioecious)
ATCGAGATGCTCGAGTTACGGTGCACTCGATTGAAGAAAATCGATGCGTT
ATCTAACGTGAACCTCTCGTATCTTTTGCTTGATGGGTGCAAAAAACTGA
CTAGCCTAAACCCGCTAAAGAACGTTGCATCCTTAAAAGAATTAGATGTG
CGAGATTGTTATGGATTTAAAAAAATCGATCTAAGCGACTGGAAACAGAG
AAACCTCAAGAAGATTACCGTTAGCGATTGTGACGGACTAGTTGTTTTAA
ATGGCTTTTCACAATGCAGCAAAAGATGCGAGCTGTTGATAGATAATTGC
AACGCTCTGAAAGAAATTCAAATTCAAGATGACTCCAGTCTTGATTCTAT
TACTGTGAACCGGTGTCCGAACCTCGATTCAATTAACGGTTTGCCTCAAG
CTTTGTCTGAGCTACGGATCTATTTTTGCGGAGCGTTGACAAAAGTTAGT
GGCGGAAAAATACCAAACCTTGATTCCGTCGAAATTGGAGCCTGTAGCAA
GCTTGTTTCGTTTGATAGGTACCTCGAAAATGTAAAGTATTTCAAATTAA
TTCAATGTCATGGCATCAAGCAGCTAAGTTTGAGGCAGCCTATGCCACGA
CTTGCAAGCGTTTCAGTCGAGTACTGCGATGGCCTGATTGCAATCGACGG
TCTACCAGAGAGTGTCAACAAACTGAAAGTCACCGGGTGTGAGGCTTTGA
AACGAGTCACACCGACGGCCGGTCTCCCGAATCTTAGCGAAGCAAATTTC
ATAGATTGCCCGAATCTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig100933:162..929-

>mRNA_P-canaliculata_contig100933.178.1 ID=mRNA_P-canaliculata_contig100933.178.1|Name=mRNA_P-canaliculata_contig100933.178.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at P-canaliculata_contig100933:162..929- (Pelvetia canaliculata dioecious)
ATGCTCGAGTTACGGTGCACTCGATTGAAGAAAATCGATGCGTTATCTAA
CGTGAACCTCTCGTATCTTTTGCTTGATGGGTGCAAAAAACTGACTAGCC
TAAACCCGCTAAAGAACGTTGCATCCTTAAAAGAATTAGATGTGCGAGAT
TGTTATGGATTTAAAAAAATCGATCTAAGCGACTGGAAACAGAGAAACCT
CAAGAAGATTACCGTTAGCGATTGTGACGGACTAGTTGTTTTAAATGGCT
TTTCACAATGCAGCAAAAGATGCGAGCTGTTGATAGATAATTGCAACGCT
CTGAAAGAAATTCAAATTCAAGATGACTCCAGTCTTGATTCTATTACTGT
GAACCGGTGTCCGAACCTCGATTCAATTAACGGTTTGCCTCAAGCTTTGT
CTGAGCTACGGATCTATTTTTGCGGAGCGTTGACAAAAGTTAGTGGCGGA
AAAATACCAAACCTTGATTCCGTCGAAATTGGAGCCTGTAGCAAGCTTGT
TTCGTTTGATAGGTACCTCGAAAATGTAAAGTATTTCAAATTAATTCAAT
GTCATGGCATCAAGCAGCTAAGTTTGAGGCAGCCTATGCCACGACTTGCA
AGCGTTTCAGTCGAGTACTGCGATGGCCTGATTGCAATCGACGGTCTACC
AGAGAGTGTCAACAAACTGAAAGTCACCGGGTGTGAGGCTTTGAAACGAG
TCACACCGACGGCCGGTCTCCCGAATCTTAGCGAAGCAAATTTCATAGAT
TGCCCGAATCTCATGCTCGAGTTACGGTGCACTCGATTGAAGAAAATCGA
TGCGTTATCTAACGTGAACCTCTCGTATCTTTTGCTTGATGGGTGCAAAA
AACTGACTAGCCTAAACCCGCTAAAGAACGTTGCATCCTTAAAAGAATTA
GATGTGCGAGATTGTTATGGATTTAAAAAAATCGATCTAAGCGACTGGAA
ACAGAGAAACCTCAAGAAGATTACCGTTAGCGATTGTGACGGACTAGTTG
TTTTAAATGGCTTTTCACAATGCAGCAAAAGATGCGAGCTGTTGATAGAT
AATTGCAACGCTCTGAAAGAAATTCAAATTCAAGATGACTCCAGTCTTGA
TTCTATTACTGTGAACCGGTGTCCGAACCTCGATTCAATTAACGGTTTGC
CTCAAGCTTTGTCTGAGCTACGGATCTATTTTTGCGGAGCGTTGACAAAA
GTTAGTGGCGGAAAAATACCAAACCTTGATTCCGTCGAAATTGGAGCCTG
TAGCAAGCTTGTTTCGTTTGATAGGTACCTCGAAAATGTAAAGTATTTCA
AATTAATTCAATGTCATGGCATCAAGCAGCTAAGTTTGAGGCAGCCTATG
CCACGACTTGCAAGCGTTTCAGTCGAGTACTGCGATGGCCTGATTGCAAT
CGACGGTCTACCAGAGAGTGTCAACAAACTGAAAGTCACCGGGTGTGAGG
CTTTGAAACGAGTCACACCGACGGCCGGTCTCCCGAATCTTAGCGAAGCA
AATTTCATAGATTGCCCGAATCTC
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